ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61g15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054941.1| Oryza sativa (japonica cultivar-group) Os02g0798900 (Os02g0798900) mRNA, complete cds Length = 1157 Score = 153 bits (77), Expect = 2e-33 Identities = 311/389 (79%) Strand = Plus / Plus Query: 95 cagagccactgcttgcagagattgtcaagaggattaccaagacaagtgatcttaattctc 154 ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||| Sbjct: 305 cagagccactgctcgcagagatcatcaagaggattgccaagacaagtgatcgtaactctc 364 Query: 155 tttccctcgtgtcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcg 214 ||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||| | Sbjct: 365 tttcccttgtgtcgaagcagctctacactatcgacgcggagcaaagggatgctatccatg 424 Query: 215 ttggctacgaactcaacccttcaacagaagccttggcatcgttgttttcccggttcccca 274 |||||| | || |||| |||| ||||| |||||||| | | ||||||||||| | Sbjct: 425 ttggctgtggtcttcacccggcaactgaagctttggcatcactatgctcccggttcccta 484 Query: 275 atttggtgaaagtagagatcaattactctgggtgggaatctagtaatggggagcagttga 334 ||||| |||||||| ||| |||||||||| ||| ||||| | ||| |||||||| Sbjct: 485 atttgtggaaagtagtgattgattactctggttggatatctatccacgggaagcagttgg 544 Query: 335 acaaccaaggcctacttgttttatcatctcactgccccttgctatccgaccttgctttaa 394 |||||||||| || ||||| | || ||||||||| | | || |||| || | |||| Sbjct: 545 acaaccaagggctccttgtgctttcgtctcactgctcttcactgaccgatctcacattaa 604 Query: 395 gcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaattga 454 ||||||||| || |||||||| ||||| |||| ||||| ||| | ||||| ||| | | Sbjct: 605 acttctgctcctatatcgatgattctggtattggctatctggcttattgcaagaaactaa 664 Query: 455 ggtccctcaggctgaaccatgcaccagca 483 |||| ||||||||||| |||||||||| Sbjct: 665 ggtctttcaggctgaactttgcaccagca 693 Score = 71.9 bits (36), Expect = 7e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgt 633 |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| Sbjct: 784 gagtggctggagtaccttggcagggccggatcattggaagaacttgtggtaaaggattgt 843
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 153 bits (77), Expect = 2e-33 Identities = 311/389 (79%) Strand = Plus / Minus Query: 95 cagagccactgcttgcagagattgtcaagaggattaccaagacaagtgatcttaattctc 154 ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||| Sbjct: 34034844 cagagccactgctcgcagagatcatcaagaggattgccaagacaagtgatcgtaactctc 34034785 Query: 155 tttccctcgtgtcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcg 214 ||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||| | Sbjct: 34034784 tttcccttgtgtcgaagcagctctacactatcgacgcggagcaaagggatgctatccatg 34034725 Query: 215 ttggctacgaactcaacccttcaacagaagccttggcatcgttgttttcccggttcccca 274 |||||| | || |||| |||| ||||| |||||||| | | ||||||||||| | Sbjct: 34034724 ttggctgtggtcttcacccggcaactgaagctttggcatcactatgctcccggttcccta 34034665 Query: 275 atttggtgaaagtagagatcaattactctgggtgggaatctagtaatggggagcagttga 334 ||||| |||||||| ||| |||||||||| ||| ||||| | ||| |||||||| Sbjct: 34034664 atttgtggaaagtagtgattgattactctggttggatatctatccacgggaagcagttgg 34034605 Query: 335 acaaccaaggcctacttgttttatcatctcactgccccttgctatccgaccttgctttaa 394 |||||||||| || ||||| | || ||||||||| | | || |||| || | |||| Sbjct: 34034604 acaaccaagggctccttgtgctttcgtctcactgctcttcactgaccgatctcacattaa 34034545 Query: 395 gcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaattga 454 ||||||||| || |||||||| ||||| |||| ||||| ||| | ||||| ||| | | Sbjct: 34034544 acttctgctcctatatcgatgattctggtattggctatctggcttattgcaagaaactaa 34034485 Query: 455 ggtccctcaggctgaaccatgcaccagca 483 |||| ||||||||||| |||||||||| Sbjct: 34034484 ggtctttcaggctgaactttgcaccagca 34034456 Score = 87.7 bits (44), Expect = 1e-13 Identities = 98/116 (84%) Strand = Plus / Minus Query: 1112 taggcttcacacaagagggtattgtaacactcatccaatcatgtccgattcgtgttcttg 1171 ||||||| |||| ||||||||||||| ||| | || || ||||| ||||||||||| Sbjct: 34028149 taggcttttcacaggagggtattgtaaacctcgttcagtcctgtccaattcgtgttctca 34028090 Query: 1172 tgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctca 1227 |||| ||||||||||||| |||| | |||||||| ||||||||||| ||||||||| Sbjct: 34028089 tgcttaatggtgccagcaattttgacgacgagggaatgaagggcctgtcatcctca 34028034 Score = 81.8 bits (41), Expect = 8e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 778 atctgctgtgatagcttgaaggatcttaggttggcttacattataaccaagccagaaact 837 ||||||||||| | ||||||| || |||||||| | ||| |||| |||||||| | Sbjct: 34028483 atctgctgtgaaaatatgaaggaactgaggttggcgcatattgtaactaagccagagata 34028424 Query: 838 ggacttcgttttctccttgggaagtgcaaagcattggagacactttacctggagtatgtt 897 ||||| ||||||||| | ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 34028423 ggactccgttttctcttggggaaatgcagagcattggagaaactttggctggagtatgtc 34028364 Query: 898 attggtctaaaagagaatgagatgattgcattattccagaggtgcagcaacct 950 |||||||||| || || || |||||||| ||||||||| ||| ||||||| Sbjct: 34028363 attggtctaactgacaacgatgtgattgcactattccagaactgcggcaacct 34028311 Score = 71.9 bits (36), Expect = 7e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgt 633 |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| Sbjct: 34034365 gagtggctggagtaccttggcagggccggatcattggaagaacttgtggtaaaggattgt 34034306 Score = 67.9 bits (34), Expect = 1e-07 Identities = 58/66 (87%) Strand = Plus / Minus Query: 1024 agccttaaggctctagctctcagctgctctatgcttcaggttgttgagctcaccttcgca 1083 ||||||||||| || |||||| |||| |||||||||||||| ||||||||||||| || Sbjct: 34028237 agccttaaggccctggctctctactgccctatgcttcaggttcttgagctcacctttaca 34028178 Query: 1084 ttttgt 1089 |||||| Sbjct: 34028177 ttttgt 34028172
>dbj|AP005295.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1695_D07 Length = 110585 Score = 153 bits (77), Expect = 2e-33 Identities = 311/389 (79%) Strand = Plus / Minus Query: 95 cagagccactgcttgcagagattgtcaagaggattaccaagacaagtgatcttaattctc 154 ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||| Sbjct: 62119 cagagccactgctcgcagagatcatcaagaggattgccaagacaagtgatcgtaactctc 62060 Query: 155 tttccctcgtgtcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcg 214 ||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||| | Sbjct: 62059 tttcccttgtgtcgaagcagctctacactatcgacgcggagcaaagggatgctatccatg 62000 Query: 215 ttggctacgaactcaacccttcaacagaagccttggcatcgttgttttcccggttcccca 274 |||||| | || |||| |||| ||||| |||||||| | | ||||||||||| | Sbjct: 61999 ttggctgtggtcttcacccggcaactgaagctttggcatcactatgctcccggttcccta 61940 Query: 275 atttggtgaaagtagagatcaattactctgggtgggaatctagtaatggggagcagttga 334 ||||| |||||||| ||| |||||||||| ||| ||||| | ||| |||||||| Sbjct: 61939 atttgtggaaagtagtgattgattactctggttggatatctatccacgggaagcagttgg 61880 Query: 335 acaaccaaggcctacttgttttatcatctcactgccccttgctatccgaccttgctttaa 394 |||||||||| || ||||| | || ||||||||| | | || |||| || | |||| Sbjct: 61879 acaaccaagggctccttgtgctttcgtctcactgctcttcactgaccgatctcacattaa 61820 Query: 395 gcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaattga 454 ||||||||| || |||||||| ||||| |||| ||||| ||| | ||||| ||| | | Sbjct: 61819 acttctgctcctatatcgatgattctggtattggctatctggcttattgcaagaaactaa 61760 Query: 455 ggtccctcaggctgaaccatgcaccagca 483 |||| ||||||||||| |||||||||| Sbjct: 61759 ggtctttcaggctgaactttgcaccagca 61731 Score = 87.7 bits (44), Expect = 1e-13 Identities = 98/116 (84%) Strand = Plus / Minus Query: 1112 taggcttcacacaagagggtattgtaacactcatccaatcatgtccgattcgtgttcttg 1171 ||||||| |||| ||||||||||||| ||| | || || ||||| ||||||||||| Sbjct: 55424 taggcttttcacaggagggtattgtaaacctcgttcagtcctgtccaattcgtgttctca 55365 Query: 1172 tgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctca 1227 |||| ||||||||||||| |||| | |||||||| ||||||||||| ||||||||| Sbjct: 55364 tgcttaatggtgccagcaattttgacgacgagggaatgaagggcctgtcatcctca 55309 Score = 81.8 bits (41), Expect = 8e-12 Identities = 140/173 (80%) Strand = Plus / Minus Query: 778 atctgctgtgatagcttgaaggatcttaggttggcttacattataaccaagccagaaact 837 ||||||||||| | ||||||| || |||||||| | ||| |||| |||||||| | Sbjct: 55758 atctgctgtgaaaatatgaaggaactgaggttggcgcatattgtaactaagccagagata 55699 Query: 838 ggacttcgttttctccttgggaagtgcaaagcattggagacactttacctggagtatgtt 897 ||||| ||||||||| | ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 55698 ggactccgttttctcttggggaaatgcagagcattggagaaactttggctggagtatgtc 55639 Query: 898 attggtctaaaagagaatgagatgattgcattattccagaggtgcagcaacct 950 |||||||||| || || || |||||||| ||||||||| ||| ||||||| Sbjct: 55638 attggtctaactgacaacgatgtgattgcactattccagaactgcggcaacct 55586 Score = 71.9 bits (36), Expect = 7e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgt 633 |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| Sbjct: 61640 gagtggctggagtaccttggcagggccggatcattggaagaacttgtggtaaaggattgt 61581 Score = 67.9 bits (34), Expect = 1e-07 Identities = 58/66 (87%) Strand = Plus / Minus Query: 1024 agccttaaggctctagctctcagctgctctatgcttcaggttgttgagctcaccttcgca 1083 ||||||||||| || |||||| |||| |||||||||||||| ||||||||||||| || Sbjct: 55512 agccttaaggccctggctctctactgccctatgcttcaggttcttgagctcacctttaca 55453 Query: 1084 ttttgt 1089 |||||| Sbjct: 55452 ttttgt 55447
>dbj|AK068929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169B16, full insert sequence Length = 1158 Score = 153 bits (77), Expect = 2e-33 Identities = 311/389 (79%) Strand = Plus / Plus Query: 95 cagagccactgcttgcagagattgtcaagaggattaccaagacaagtgatcttaattctc 154 ||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||| Sbjct: 306 cagagccactgctcgcagagatcatcaagaggattgccaagacaagtgatcgtaactctc 365 Query: 155 tttccctcgtgtcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcg 214 ||||||| |||||||||||||||| ||| || | |||||||| ||||||||||||| | Sbjct: 366 tttcccttgtgtcgaagcagctctacactatcgacgcggagcaaagggatgctatccatg 425 Query: 215 ttggctacgaactcaacccttcaacagaagccttggcatcgttgttttcccggttcccca 274 |||||| | || |||| |||| ||||| |||||||| | | ||||||||||| | Sbjct: 426 ttggctgtggtcttcacccggcaactgaagctttggcatcactatgctcccggttcccta 485 Query: 275 atttggtgaaagtagagatcaattactctgggtgggaatctagtaatggggagcagttga 334 ||||| |||||||| ||| |||||||||| ||| ||||| | ||| |||||||| Sbjct: 486 atttgtggaaagtagtgattgattactctggttggatatctatccacgggaagcagttgg 545 Query: 335 acaaccaaggcctacttgttttatcatctcactgccccttgctatccgaccttgctttaa 394 |||||||||| || ||||| | || ||||||||| | | || |||| || | |||| Sbjct: 546 acaaccaagggctccttgtgctttcgtctcactgctcttcactgaccgatctcacattaa 605 Query: 395 gcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaattga 454 ||||||||| || |||||||| ||||| |||| ||||| ||| | ||||| ||| | | Sbjct: 606 acttctgctcctatatcgatgattctggtattggctatctggcttattgcaagaaactaa 665 Query: 455 ggtccctcaggctgaaccatgcaccagca 483 |||| ||||||||||| |||||||||| Sbjct: 666 ggtctttcaggctgaactttgcaccagca 694 Score = 71.9 bits (36), Expect = 7e-09 Identities = 54/60 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgt 633 |||||||||||||||||||| ||| |||||||||| ||||||||| |||||||||||| Sbjct: 785 gagtggctggagtaccttggcagggccggatcattggaagaacttgtggtaaaggattgt 844
>ref|NM_001073425.1| Oryza sativa (japonica cultivar-group) Os12g0517000 (Os12g0517000) mRNA, complete cds Length = 1449 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 577 tggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgtgat 636 |||||| |||||||||| || |||||||||||| |||||||||||||||| |||||| Sbjct: 499 tggctgaagtaccttggcagtgatggatcattggaagaacttgttgtaaagaattgtgga 558 Query: 637 ggaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||| || ||| || ||||||| ||||||||| Sbjct: 559 ggaatcagccagtacgacctcctattgtttggtccaggatgg 600 Score = 73.8 bits (37), Expect = 2e-09 Identities = 94/113 (83%) Strand = Plus / Plus Query: 106 cttgcagagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtg 165 ||||||||||| | ||||||||||| | |||||||||||| | ||||||||| || ||| Sbjct: 25 cttgcagagatcatgaagaggattacaaggacaagtgatctaagttctctttctcttgtg 84 Query: 166 tcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcgttgg 218 ||||||| ||||| |||| | | |||||||||||| | ||||||| ||||| Sbjct: 85 tcgaagcggctctacaccattgatgcggagcacaggagtactatccgtgttgg 137 Score = 71.9 bits (36), Expect = 7e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 |||| ||||||||||||||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 934 aggatgccattgactgatgtaagcctcaaggctctagccctcgggtgccgtatgcttcag 993 Query: 1063 gttgttgagctc 1074 ||||||||||| Sbjct: 994 attgttgagctc 1005 Score = 52.0 bits (26), Expect = 0.007 Identities = 68/82 (82%) Strand = Plus / Plus Query: 390 tttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaa 449 |||||||||||||| |||||||||||| ||||||| | ||| ||| |||| ||||| || Sbjct: 309 tttaagcttctgctattacatcgatgactctggtctagcttacctaactgattgcaagaa 368 Query: 450 attgaggtccctcaggctgaac 471 || ||||||||||||||| Sbjct: 369 gttagtttccctcaggctgaac 390
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Plus Query: 577 tggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgtgat 636 |||||| |||||||||| || |||||||||||| |||||||||||||||| |||||| Sbjct: 20135092 tggctgaagtaccttggcagtgatggatcattggaagaacttgttgtaaagaattgtgga 20135151 Query: 637 ggaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||| || ||| || ||||||| ||||||||| Sbjct: 20135152 ggaatcagccagtacgacctcctattgtttggtccaggatgg 20135193 Score = 85.7 bits (43), Expect = 5e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagc 437 |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 20126485 ttaagcttctgctcatacattgatgacactggtcttggttatctagc 20126531 Score = 81.8 bits (41), Expect = 8e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaa 450 |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct: 20786340 ttaagcttttgctcatacattgatgacactggtctcggttatctagcattttgcaagaaa 20786281 Query: 451 ttgaggtccctcaggctgaac 471 |||| | |||||||||||||| Sbjct: 20786280 ttgatgaccctcaggctgaac 20786260 Score = 73.8 bits (37), Expect = 2e-09 Identities = 94/113 (83%) Strand = Plus / Plus Query: 106 cttgcagagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtg 165 ||||||||||| | ||||||||||| | |||||||||||| | ||||||||| || ||| Sbjct: 20134618 cttgcagagatcatgaagaggattacaaggacaagtgatctaagttctctttctcttgtg 20134677 Query: 166 tcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcgttgg 218 ||||||| ||||| |||| | | |||||||||||| | ||||||| ||||| Sbjct: 20134678 tcgaagcggctctacaccattgatgcggagcacaggagtactatccgtgttgg 20134730 Score = 71.9 bits (36), Expect = 7e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 |||| ||||||||||||||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 20135527 aggatgccattgactgatgtaagcctcaaggctctagccctcgggtgccgtatgcttcag 20135586 Query: 1063 gttgttgagctc 1074 ||||||||||| Sbjct: 20135587 attgttgagctc 20135598 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Minus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 ||||| |||||||| |||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 20785716 aggacaccattgaccgatgaaagcctcaaggctctagccctcgggtgccgtatgcttcag 20785657 Query: 1063 gttgttgagctcac 1076 |||||||||||||| Sbjct: 20785656 gttgttgagctcac 20785643 Score = 60.0 bits (30), Expect = 3e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 83 tggacgatctcccagagccactgcttgcagagattgtcaagaggattaccaagacaagtg 142 |||| |||||||| || || |||| ||||||||||| |||||||||||||| ||||||| Sbjct: 20142014 tggaggatctcccggatgcattgctcgcagagattgtaaagaggattaccaacacaagtg 20142073 Query: 143 atcttaattctctttccctcgtgtcgaagc 172 | || || || ||||||| ||||| |||| Sbjct: 20142074 acctgaagtccatttcccttgtgtcaaagc 20142103 Score = 60.0 bits (30), Expect = 3e-05 Identities = 93/114 (81%) Strand = Plus / Minus Query: 1167 tcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctc 1226 |||||||||| ||| |||| || ||| |||||||||||||||||| ||||||||| | Sbjct: 20785555 tcttgtgctatgtggcgccaatatctttgatgacgaggggatgaaggccctctcatctgc 20785496 Query: 1227 acagtttctggagaatcttgagctcgtggattgcaactctataactgatgctgg 1280 ||| || ||| ||| |||||||| ||||||||| ||||||||||||||| Sbjct: 20785495 acaattcctgcagacgcttgagcttatggattgcatacatataactgatgctgg 20785442 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Minus Query: 577 tggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgtgat 636 |||||| |||||||||| || |||||||| ||| ||||||||| |||||| | ||||| Sbjct: 20786151 tggctgaagtaccttggcagtgatggatcactggaagaacttgtagtaaagaactgtgaa 20786092 Query: 637 ggaatcagccagt 649 |||||||||||| Sbjct: 20786091 cgaatcagccagt 20786079 Score = 52.0 bits (26), Expect = 0.007 Identities = 68/82 (82%) Strand = Plus / Plus Query: 390 tttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaa 449 |||||||||||||| |||||||||||| ||||||| | ||| ||| |||| ||||| || Sbjct: 20134902 tttaagcttctgctattacatcgatgactctggtctagcttacctaactgattgcaagaa 20134961 Query: 450 attgaggtccctcaggctgaac 471 || ||||||||||||||| Sbjct: 20134962 gttagtttccctcaggctgaac 20134983 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 638 gaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||||||||| ||| |||||||| |||||| Sbjct: 20142548 gaatcagccagtatgatctcctaaaatttggccctggatgg 20142588 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 |||||| ||||||||| ||| || ||||||||||| | ||||||||||| ||||| || Sbjct: 20126205 agagatcgtcaagagggttagcagtacaagtgatctgagctctctttcccttgtgtcaaa 20126264 Query: 171 gc 172 || Sbjct: 20126265 gc 20126266 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1162 cgtgttcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctca 1221 |||| |||||||||| ||| |||| || ||| |||| ||||||||||||| ||||||| Sbjct: 20127262 cgtgatcttgtgctatgtggcgccaatatctttgatgatgaggggatgaaggccctctca 20127321 Query: 1222 tc 1223 || Sbjct: 20127322 tc 20127323 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 tgaaagtagagatcaattactctgg 305 |||||||||| |||||||||||||| Sbjct: 20126375 tgaaagtagatatcaattactctgg 20126399 Score = 42.1 bits (21), Expect = 6.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagat 293 |||||| |||||||||||| || |||||||||| Sbjct: 20142192 ttcccgattccccaatttgttggaagtagagat 20142224
>emb|AL731737.4|CNS08C7M Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0054A12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 20149 Score = 99.6 bits (50), Expect = 3e-17 Identities = 89/102 (87%) Strand = Plus / Minus Query: 577 tggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgtgat 636 |||||| |||||||||| || |||||||||||| |||||||||||||||| |||||| Sbjct: 2681 tggctgaagtaccttggcagtgatggatcattggaagaacttgttgtaaagaattgtgga 2622 Query: 637 ggaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||| || ||| || ||||||| ||||||||| Sbjct: 2621 ggaatcagccagtacgacctcctattgtttggtccaggatgg 2580 Score = 85.7 bits (43), Expect = 5e-13 Identities = 46/47 (97%) Strand = Plus / Minus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagc 437 |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 11288 ttaagcttctgctcatacattgatgacactggtcttggttatctagc 11242 Score = 73.8 bits (37), Expect = 2e-09 Identities = 94/113 (83%) Strand = Plus / Minus Query: 106 cttgcagagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtg 165 ||||||||||| | ||||||||||| | |||||||||||| | ||||||||| || ||| Sbjct: 3155 cttgcagagatcatgaagaggattacaaggacaagtgatctaagttctctttctcttgtg 3096 Query: 166 tcgaagcagctcttcaccgtccaggcggagcacagggatgctatccgcgttgg 218 ||||||| ||||| |||| | | |||||||||||| | ||||||| ||||| Sbjct: 3095 tcgaagcggctctacaccattgatgcggagcacaggagtactatccgtgttgg 3043 Score = 71.9 bits (36), Expect = 7e-09 Identities = 63/72 (87%) Strand = Plus / Minus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 |||| ||||||||||||||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 2246 aggatgccattgactgatgtaagcctcaaggctctagccctcgggtgccgtatgcttcag 2187 Query: 1063 gttgttgagctc 1074 ||||||||||| Sbjct: 2186 attgttgagctc 2175 Score = 52.0 bits (26), Expect = 0.007 Identities = 68/82 (82%) Strand = Plus / Minus Query: 390 tttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaa 449 |||||||||||||| |||||||||||| ||||||| | ||| ||| |||| ||||| || Sbjct: 2871 tttaagcttctgctattacatcgatgactctggtctagcttacctaactgattgcaagaa 2812 Query: 450 attgaggtccctcaggctgaac 471 || ||||||||||||||| Sbjct: 2811 gttagtttccctcaggctgaac 2790 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Minus Query: 1162 cgtgttcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctca 1221 |||| |||||||||| ||| |||| || ||| |||| ||||||||||||| ||||||| Sbjct: 10511 cgtgatcttgtgctatgtggcgccaatatctttgatgatgaggggatgaaggccctctca 10452 Query: 1222 tc 1223 || Sbjct: 10451 tc 10450 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Minus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 |||||| ||||||||| ||| || ||||||||||| | ||||||||||| ||||| || Sbjct: 11568 agagatcgtcaagagggttagcagtacaagtgatctgagctctctttcccttgtgtcaaa 11509 Query: 171 gc 172 || Sbjct: 11508 gc 11507 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 281 tgaaagtagagatcaattactctgg 305 |||||||||| |||||||||||||| Sbjct: 11398 tgaaagtagatatcaattactctgg 11374
>ref|NM_001054940.1| Oryza sativa (japonica cultivar-group) Os02g0798800 (Os02g0798800) mRNA, complete cds Length = 846 Score = 87.7 bits (44), Expect = 1e-13 Identities = 98/116 (84%) Strand = Plus / Plus Query: 1112 taggcttcacacaagagggtattgtaacactcatccaatcatgtccgattcgtgttcttg 1171 ||||||| |||| ||||||||||||| ||| | || || ||||| ||||||||||| Sbjct: 434 taggcttttcacaggagggtattgtaaacctcgttcagtcctgtccaattcgtgttctca 493 Query: 1172 tgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctca 1227 |||| ||||||||||||| |||| | |||||||| ||||||||||| ||||||||| Sbjct: 494 tgcttaatggtgccagcaattttgacgacgagggaatgaagggcctgtcatcctca 549 Score = 81.8 bits (41), Expect = 8e-12 Identities = 140/173 (80%) Strand = Plus / Plus Query: 778 atctgctgtgatagcttgaaggatcttaggttggcttacattataaccaagccagaaact 837 ||||||||||| | ||||||| || |||||||| | ||| |||| |||||||| | Sbjct: 100 atctgctgtgaaaatatgaaggaactgaggttggcgcatattgtaactaagccagagata 159 Query: 838 ggacttcgttttctccttgggaagtgcaaagcattggagacactttacctggagtatgtt 897 ||||| ||||||||| | ||||| |||| ||||||||||| ||||| ||||||||||| Sbjct: 160 ggactccgttttctcttggggaaatgcagagcattggagaaactttggctggagtatgtc 219 Query: 898 attggtctaaaagagaatgagatgattgcattattccagaggtgcagcaacct 950 |||||||||| || || || |||||||| ||||||||| ||| ||||||| Sbjct: 220 attggtctaactgacaacgatgtgattgcactattccagaactgcggcaacct 272 Score = 67.9 bits (34), Expect = 1e-07 Identities = 58/66 (87%) Strand = Plus / Plus Query: 1024 agccttaaggctctagctctcagctgctctatgcttcaggttgttgagctcaccttcgca 1083 ||||||||||| || |||||| |||| |||||||||||||| ||||||||||||| || Sbjct: 346 agccttaaggccctggctctctactgccctatgcttcaggttcttgagctcacctttaca 405 Query: 1084 ttttgt 1089 |||||| Sbjct: 406 ttttgt 411
>ref|NM_001073424.1| Oryza sativa (japonica cultivar-group) Os12g0516900 (Os12g0516900) mRNA, complete cds Length = 2769 Score = 85.7 bits (43), Expect = 5e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagc 437 |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 574 ttaagcttctgctcatacattgatgacactggtcttggttatctagc 620 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 |||||| ||||||||| ||| || ||||||||||| | ||||||||||| ||||| || Sbjct: 294 agagatcgtcaagagggttagcagtacaagtgatctgagctctctttcccttgtgtcaaa 353 Query: 171 gc 172 || Sbjct: 354 gc 355 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1162 cgtgttcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctca 1221 |||| |||||||||| ||| |||| || ||| |||| ||||||||||||| ||||||| Sbjct: 1351 cgtgatcttgtgctatgtggcgccaatatctttgatgatgaggggatgaaggccctctca 1410 Query: 1222 tc 1223 || Sbjct: 1411 tc 1412 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 tgaaagtagagatcaattactctgg 305 |||||||||| |||||||||||||| Sbjct: 464 tgaaagtagatatcaattactctgg 488
>dbj|AK121521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028J24, full insert sequence Length = 1933 Score = 85.7 bits (43), Expect = 5e-13 Identities = 46/47 (97%) Strand = Plus / Plus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagc 437 |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 572 ttaagcttctgctcatacattgatgacactggtcttggttatctagc 618 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 |||||| ||||||||| ||| || ||||||||||| | ||||||||||| ||||| || Sbjct: 292 agagatcgtcaagagggttagcagtacaagtgatctgagctctctttcccttgtgtcaaa 351 Query: 171 gc 172 || Sbjct: 352 gc 353 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1162 cgtgttcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctca 1221 |||| |||||||||| ||| |||| || ||| |||| ||||||||||||| ||||||| Sbjct: 1349 cgtgatcttgtgctatgtggcgccaatatctttgatgatgaggggatgaaggccctctca 1408 Query: 1222 tc 1223 || Sbjct: 1409 tc 1410 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 tgaaagtagagatcaattactctgg 305 |||||||||| |||||||||||||| Sbjct: 462 tgaaagtagatatcaattactctgg 486
>dbj|AK101082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024E24, full insert sequence Length = 2771 Score = 83.8 bits (42), Expect = 2e-12 Identities = 45/46 (97%) Strand = Plus / Plus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctag 436 |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 576 ttaagcttctgctcatacattgatgacactggtcttggttatctag 621 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 |||||| ||||||||| ||| || ||||||||||| | ||||||||||| ||||| || Sbjct: 296 agagatcgtcaagagggttagcagtacaagtgatctgagctctctttcccttgtgtcaaa 355 Query: 171 gc 172 || Sbjct: 356 gc 357 Score = 44.1 bits (22), Expect = 1.6 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1162 cgtgttcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctca 1221 |||| |||||||||| ||| |||| || ||| |||| ||||||||||||| ||||||| Sbjct: 1353 cgtgatcttgtgctatgtggcgccaatatctttgatgatgaggggatgaaggccctctca 1412 Query: 1222 tc 1223 || Sbjct: 1413 tc 1414 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 tgaaagtagagatcaattactctgg 305 |||||||||| |||||||||||||| Sbjct: 466 tgaaagtagatatcaattactctgg 490
>ref|NM_001073438.1| Oryza sativa (japonica cultivar-group) Os12g0526600 (Os12g0526600) mRNA, complete cds Length = 1308 Score = 81.8 bits (41), Expect = 8e-12 Identities = 71/81 (87%) Strand = Plus / Plus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaa 450 |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct: 310 ttaagcttttgctcatacattgatgacactggtctcggttatctagcattttgcaagaaa 369 Query: 451 ttgaggtccctcaggctgaac 471 |||| | |||||||||||||| Sbjct: 370 ttgatgaccctcaggctgaac 390 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Plus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 ||||| |||||||| |||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 790 aggacaccattgaccgatgaaagcctcaaggctctagccctcgggtgccgtatgcttcag 849 Query: 1063 gttgttgagctcac 1076 |||||||||||||| Sbjct: 850 gttgttgagctcac 863 Score = 60.0 bits (30), Expect = 3e-05 Identities = 93/114 (81%) Strand = Plus / Plus Query: 1167 tcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctc 1226 |||||||||| ||| |||| || ||| |||||||||||||||||| ||||||||| | Sbjct: 951 tcttgtgctatgtggcgccaatatctttgatgacgaggggatgaaggccctctcatctgc 1010 Query: 1227 acagtttctggagaatcttgagctcgtggattgcaactctataactgatgctgg 1280 ||| || ||| ||| |||||||| ||||||||| ||||||||||||||| Sbjct: 1011 acaattcctgcagacgcttgagcttatggattgcatacatataactgatgctgg 1064
>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 149022 Score = 81.8 bits (41), Expect = 8e-12 Identities = 71/81 (87%) Strand = Plus / Minus Query: 391 ttaagcttctgctcatacatcgatgacactggtcttggttatctagctgactgcaaaaaa 450 |||||||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||| Sbjct: 84181 ttaagcttttgctcatacattgatgacactggtctcggttatctagcattttgcaagaaa 84122 Query: 451 ttgaggtccctcaggctgaac 471 |||| | |||||||||||||| Sbjct: 84121 ttgatgaccctcaggctgaac 84101 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Minus Query: 1003 aggacgccattgactgatgttagccttaaggctctagctctcagctgctctatgcttcag 1062 ||||| |||||||| |||| ||||| ||||||||||| ||| | ||| |||||||||| Sbjct: 83557 aggacaccattgaccgatgaaagcctcaaggctctagccctcgggtgccgtatgcttcag 83498 Query: 1063 gttgttgagctcac 1076 |||||||||||||| Sbjct: 83497 gttgttgagctcac 83484 Score = 60.0 bits (30), Expect = 3e-05 Identities = 93/114 (81%) Strand = Plus / Minus Query: 1167 tcttgtgctaaatggtgccagcattttttatgacgaggggatgaagggcctctcatcctc 1226 |||||||||| ||| |||| || ||| |||||||||||||||||| ||||||||| | Sbjct: 83396 tcttgtgctatgtggcgccaatatctttgatgacgaggggatgaaggccctctcatctgc 83337 Query: 1227 acagtttctggagaatcttgagctcgtggattgcaactctataactgatgctgg 1280 ||| || ||| ||| |||||||| ||||||||| ||||||||||||||| Sbjct: 83336 acaattcctgcagacgcttgagcttatggattgcatacatataactgatgctgg 83283 Score = 58.0 bits (29), Expect = 1e-04 Identities = 62/73 (84%) Strand = Plus / Minus Query: 577 tggctggagtaccttgggaggcatggatcattgggagaacttgttgtaaaggattgtgat 636 |||||| |||||||||| || |||||||| ||| ||||||||| |||||| | ||||| Sbjct: 83992 tggctgaagtaccttggcagtgatggatcactggaagaacttgtagtaaagaactgtgaa 83933 Query: 637 ggaatcagccagt 649 |||||||||||| Sbjct: 83932 cgaatcagccagt 83920
>emb|CR855132.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0107E14, complete sequence Length = 92334 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||| ||||| ||||||||||| || |||||||| Sbjct: 87933 agagattctcaagaggattacaaggacaagcgatctgaattctctttctcttgtgtcgaa 87992 Query: 171 gcagctct 178 |||||||| Sbjct: 87993 gcagctct 88000 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 112 gagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaag 171 |||||| |||||| |||||| | |||||| || ||||||||||||||||| ||||||||| Sbjct: 76562 gagattctcaagaagattacaaggacaagcgaccttaattctctttccctggtgtcgaag 76621 Query: 172 cagctct 178 ||||||| Sbjct: 76622 cagctct 76628 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 92053 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 92112 Query: 171 gcagctct 178 |||||||| Sbjct: 92113 gcagctct 92120 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 77291 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 77350 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 77351 gagtatgtta 77360 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || |||||||||||| |||||| Sbjct: 88393 gagtggctggagtaccttggcagtgatggatcattggaagaact 88436 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 76705 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 76749 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 92197 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 92241 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 77021 gagtggctggagtaccttggcactgatggatcattggaagaact 77064
>emb|CR855093.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0134J07, complete sequence Length = 82650 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||| ||||| ||||||||||| || |||||||| Sbjct: 11027 agagattctcaagaggattacaaggacaagcgatctgaattctctttctcttgtgtcgaa 11086 Query: 171 gcagctct 178 |||||||| Sbjct: 11087 gcagctct 11094 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 15147 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 15206 Query: 171 gcagctct 178 |||||||| Sbjct: 15207 gcagctct 15214 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 135 gacaagtgatcttaattctctttccctcgtgtcgaagcagctcttcacc 183 |||||| ||||| |||||||||||||| |||||||||||||||| |||| Sbjct: 25111 gacaagcgatctgaattctctttccctggtgtcgaagcagctctacacc 25159 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 385 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 444 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 445 gagtatgtta 454 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1148 aatcatgtccgattcgtgttcttgtgctaaatggtgcc 1185 |||| ||||| ||||||||||||||||||||||||||| Sbjct: 16199 aatcttgtccaattcgtgttcttgtgctaaatggtgcc 16236 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || |||||||||||| |||||| Sbjct: 11487 gagtggctggagtaccttggcagtgatggatcattggaagaact 11530 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 15291 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 15335 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| ||||||||| | ||||||||||| |||||||||| Sbjct: 25231 ttcccggtttcccaatttgctcaaagtagagattgattactctgg 25275 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 115 gagtggctggagtaccttggcactgatggatcattggaagaact 158 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || | |||||||||| |||||| Sbjct: 15607 gagtggctggagtaccttggtagtgacggatcattggaagaact 15650 Score = 46.1 bits (23), Expect = 0.41 Identities = 62/75 (82%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 ||||||| |||||||||||| | | ||||||||||| || || |||| ||| | |||| Sbjct: 15871 ccagaaataggacttcgttttttgttggggaagtgcaaggcgttagagaaactgtgcctg 15930 Query: 889 gagtatgttattggt 903 |||||||||| |||| Sbjct: 15931 gagtatgttactggt 15945
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||| ||||| ||||||||||| || |||||||| Sbjct: 18034756 agagattctcaagaggattacaaggacaagcgatctgaattctctttctcttgtgtcgaa 18034815 Query: 171 gcagctct 178 |||||||| Sbjct: 18034816 gcagctct 18034823 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 112 gagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaag 171 |||||| |||||| |||||| | |||||| || ||||||||||||||||| ||||||||| Sbjct: 18023384 gagattctcaagaagattacaaggacaagcgaccttaattctctttccctggtgtcgaag 18023443 Query: 172 cagctct 178 ||||||| Sbjct: 18023444 cagctct 18023450 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 18038877 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 18038936 Query: 171 gcagctct 178 |||||||| Sbjct: 18038937 gcagctct 18038944 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 135 gacaagtgatcttaattctctttccctcgtgtcgaagcagctcttcacc 183 |||||| ||||| |||||||||||||| |||||||||||||||| |||| Sbjct: 18048838 gacaagcgatctgaattctctttccctggtgtcgaagcagctctacacc 18048886 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 18024113 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 18024172 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 18024173 gagtatgtta 18024182 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1148 aatcatgtccgattcgtgttcttgtgctaaatggtgcc 1185 |||| ||||| ||||||||||||||||||||||||||| Sbjct: 18039929 aatcttgtccaattcgtgttcttgtgctaaatggtgcc 18039966 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || |||||||||||| |||||| Sbjct: 18035216 gagtggctggagtaccttggcagtgatggatcattggaagaact 18035259 Score = 56.0 bits (28), Expect = 4e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 119 tcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaagcagctct 178 ||||||||||| | | ||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 18107310 tcaagaggattgcaaggacaaacaatctgaattctctttcccttgtgtcgaagcagctct 18107369 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 18023527 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 18023571 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 18039021 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 18039065 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| ||||||||| | ||||||||||| |||||||||| Sbjct: 18048958 ttcccggtttcccaatttgctcaaagtagagattgattactctgg 18049002 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 18023843 gagtggctggagtaccttggcactgatggatcattggaagaact 18023886 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || | |||||||||| |||||| Sbjct: 18039337 gagtggctggagtaccttggtagtgacggatcattggaagaact 18039380 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 aaagtagagatcaattactctgggtggg 310 ||||||||||||||||||||||| |||| Sbjct: 18107469 aaagtagagatcaattactctggttggg 18107496 Score = 46.1 bits (23), Expect = 0.41 Identities = 62/75 (82%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 ||||||| |||||||||||| | | ||||||||||| || || |||| ||| | |||| Sbjct: 18039601 ccagaaataggacttcgttttttgttggggaagtgcaaggcgttagagaaactgtgcctg 18039660 Query: 889 gagtatgttattggt 903 |||||||||| |||| Sbjct: 18039661 gagtatgttactggt 18039675 Score = 44.1 bits (22), Expect = 1.6 Identities = 64/78 (82%) Strand = Plus / Plus Query: 601 ggatcattgggagaacttgttgtaaaggattgtgatggaatcagccagtatgatctctta 660 |||||||||| |||||| || || ||| |||| | ||||| | |||||| || | ||| Sbjct: 18107790 ggatcattggaagaactagtagtgaagaattgcaaaggaatagggcagtatcatttttta 18107849 Query: 661 atgtttggcccaggatgg 678 |||||||||||||||||| Sbjct: 18107850 atgtttggcccaggatgg 18107867
>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07, complete sequence Length = 129198 Score = 79.8 bits (40), Expect = 3e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||| ||||| ||||||||||| || |||||||| Sbjct: 125036 agagattctcaagaggattacaaggacaagcgatctgaattctctttctcttgtgtcgaa 125095 Query: 171 gcagctct 178 |||||||| Sbjct: 125096 gcagctct 125103 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 112 gagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaag 171 |||||| |||||| |||||| | |||||| || ||||||||||||||||| ||||||||| Sbjct: 113664 gagattctcaagaagattacaaggacaagcgaccttaattctctttccctggtgtcgaag 113723 Query: 172 cagctct 178 ||||||| Sbjct: 113724 cagctct 113730 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 114393 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 114452 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 114453 gagtatgtta 114462 Score = 56.0 bits (28), Expect = 4e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || |||||||||||| |||||| Sbjct: 125496 gagtggctggagtaccttggcagtgatggatcattggaagaact 125539 Score = 52.0 bits (26), Expect = 0.007 Identities = 38/42 (90%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattc 152 ||||||| ||||||||||||| | |||||||||||| ||||| Sbjct: 129157 agagattctcaagaggattacaaggacaagtgatctgaattc 129198 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 113807 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 113851 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 114123 gagtggctggagtaccttggcactgatggatcattggaagaact 114166
>ref|NM_001059097.1| Oryza sativa (japonica cultivar-group) Os04g0370300 (Os04g0370300) mRNA, partial cds Length = 2191 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 112 gagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaag 171 |||||| |||||| |||||| | |||||| || ||||||||||||||||| ||||||||| Sbjct: 310 gagattctcaagaagattacaaggacaagcgaccttaattctctttccctggtgtcgaag 369 Query: 172 cagctct 178 ||||||| Sbjct: 370 cagctct 376 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 1039 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 1098 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 1099 gagtatgtta 1108 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 453 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 497 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 769 gagtggctggagtaccttggcactgatggatcattggaagaact 812
>dbj|AK065364.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013007K15, full insert sequence Length = 2195 Score = 77.8 bits (39), Expect = 1e-10 Identities = 60/67 (89%) Strand = Plus / Plus Query: 112 gagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaag 171 |||||| |||||| |||||| | |||||| || ||||||||||||||||| ||||||||| Sbjct: 314 gagattctcaagaagattacaaggacaagcgaccttaattctctttccctggtgtcgaag 373 Query: 172 cagctct 178 ||||||| Sbjct: 374 cagctct 380 Score = 60.0 bits (30), Expect = 3e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 |||||||||||||| |||||||| || |||||||||| || || |||| ||| | |||| Sbjct: 1043 ccagaaactggactacgttttctgctgaggaagtgcaaggcgttagagagactatgcctg 1102 Query: 889 gagtatgtta 898 |||||||||| Sbjct: 1103 gagtatgtta 1112 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 457 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 501 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| | |||||||||||| |||||| Sbjct: 773 gagtggctggagtaccttggcactgatggatcattggaagaact 816
>ref|NM_001059098.1| Oryza sativa (japonica cultivar-group) Os04g0370600 (Os04g0370600) mRNA, complete cds Length = 2097 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 318 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 377 Query: 171 gcagctct 178 |||||||| Sbjct: 378 gcagctct 385 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1148 aatcatgtccgattcgtgttcttgtgctaaatggtgcc 1185 |||| ||||| ||||||||||||||||||||||||||| Sbjct: 1370 aatcttgtccaattcgtgttcttgtgctaaatggtgcc 1407 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 462 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 506 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || | |||||||||| |||||| Sbjct: 778 gagtggctggagtaccttggtagtgacggatcattggaagaact 821 Score = 46.1 bits (23), Expect = 0.41 Identities = 62/75 (82%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 ||||||| |||||||||||| | | ||||||||||| || || |||| ||| | |||| Sbjct: 1042 ccagaaataggacttcgttttttgttggggaagtgcaaggcgttagagaaactgtgcctg 1101 Query: 889 gagtatgttattggt 903 |||||||||| |||| Sbjct: 1102 gagtatgttactggt 1116
>emb|AL663016.5|OSJN00216 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A22, complete sequence Length = 131489 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 1761 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 1820 Query: 171 gcagctct 178 |||||||| Sbjct: 1821 gcagctct 1828 Score = 65.9 bits (33), Expect = 4e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 135 gacaagtgatcttaattctctttccctcgtgtcgaagcagctcttcacc 183 |||||| ||||| |||||||||||||| |||||||||||||||| |||| Sbjct: 11722 gacaagcgatctgaattctctttccctggtgtcgaagcagctctacacc 11770 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1148 aatcatgtccgattcgtgttcttgtgctaaatggtgcc 1185 |||| ||||| ||||||||||||||||||||||||||| Sbjct: 2813 aatcttgtccaattcgtgttcttgtgctaaatggtgcc 2850 Score = 56.0 bits (28), Expect = 4e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 119 tcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaagcagctct 178 ||||||||||| | | ||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 70194 tcaagaggattgcaaggacaaacaatctgaattctctttcccttgtgtcgaagcagctct 70253 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 1905 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 1949 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| ||||||||| | ||||||||||| |||||||||| Sbjct: 11842 ttcccggtttcccaatttgctcaaagtagagattgattactctgg 11886 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || | |||||||||| |||||| Sbjct: 2221 gagtggctggagtaccttggtagtgacggatcattggaagaact 2264 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 aaagtagagatcaattactctgggtggg 310 ||||||||||||||||||||||| |||| Sbjct: 70353 aaagtagagatcaattactctggttggg 70380 Score = 46.1 bits (23), Expect = 0.41 Identities = 62/75 (82%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 ||||||| |||||||||||| | | ||||||||||| || || |||| ||| | |||| Sbjct: 2485 ccagaaataggacttcgttttttgttggggaagtgcaaggcgttagagaaactgtgcctg 2544 Query: 889 gagtatgttattggt 903 |||||||||| |||| Sbjct: 2545 gagtatgttactggt 2559 Score = 44.1 bits (22), Expect = 1.6 Identities = 64/78 (82%) Strand = Plus / Plus Query: 601 ggatcattgggagaacttgttgtaaaggattgtgatggaatcagccagtatgatctctta 660 |||||||||| |||||| || || ||| |||| | ||||| | |||||| || | ||| Sbjct: 70674 ggatcattggaagaactagtagtgaagaattgcaaaggaatagggcagtatcatttttta 70733 Query: 661 atgtttggcccaggatgg 678 |||||||||||||||||| Sbjct: 70734 atgtttggcccaggatgg 70751
>dbj|AK103855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148N10, full insert sequence Length = 2098 Score = 71.9 bits (36), Expect = 7e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 111 agagattgtcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaa 170 ||||||| ||||||||||||| | |||||||||||| |||||| | || || |||||||| Sbjct: 319 agagattctcaagaggattacaaggacaagtgatctgaattctgtctctcttgtgtcgaa 378 Query: 171 gcagctct 178 |||||||| Sbjct: 379 gcagctct 386 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1148 aatcatgtccgattcgtgttcttgtgctaaatggtgcc 1185 |||| ||||| ||||||||||||||||||||||||||| Sbjct: 1371 aatcttgtccaattcgtgttcttgtgctaaatggtgcc 1408 Score = 50.1 bits (25), Expect = 0.027 Identities = 40/45 (88%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagatcaattactctgg 305 ||||||||| || |||||| | |||||||||||| |||||||||| Sbjct: 463 ttcccggtttcctaatttgctcaaagtagagatcgattactctgg 507 Score = 48.1 bits (24), Expect = 0.10 Identities = 39/44 (88%) Strand = Plus / Plus Query: 574 gagtggctggagtaccttgggaggcatggatcattgggagaact 617 |||||||||||||||||||| || | |||||||||| |||||| Sbjct: 779 gagtggctggagtaccttggtagtgacggatcattggaagaact 822 Score = 46.1 bits (23), Expect = 0.41 Identities = 62/75 (82%) Strand = Plus / Plus Query: 829 ccagaaactggacttcgttttctccttgggaagtgcaaagcattggagacactttacctg 888 ||||||| |||||||||||| | | ||||||||||| || || |||| ||| | |||| Sbjct: 1043 ccagaaataggacttcgttttttgttggggaagtgcaaggcgttagagaaactgtgcctg 1102 Query: 889 gagtatgttattggt 903 |||||||||| |||| Sbjct: 1103 gagtatgttactggt 1117
>ref|NM_001073426.1| Oryza sativa (japonica cultivar-group) Os12g0517100 (Os12g0517100) mRNA, complete cds Length = 2151 Score = 60.0 bits (30), Expect = 3e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 83 tggacgatctcccagagccactgcttgcagagattgtcaagaggattaccaagacaagtg 142 |||| |||||||| || || |||| ||||||||||| |||||||||||||| ||||||| Sbjct: 278 tggaggatctcccggatgcattgctcgcagagattgtaaagaggattaccaacacaagtg 337 Query: 143 atcttaattctctttccctcgtgtcgaagc 172 | || || || ||||||| ||||| |||| Sbjct: 338 acctgaagtccatttcccttgtgtcaaagc 367 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 638 gaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||||||||| ||| |||||||| |||||| Sbjct: 812 gaatcagccagtatgatctcctaaaatttggccctggatgg 852 Score = 42.1 bits (21), Expect = 6.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagat 293 |||||| |||||||||||| || |||||||||| Sbjct: 456 ttcccgattccccaatttgttggaagtagagat 488
>dbj|AK073020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149K21, full insert sequence Length = 2152 Score = 60.0 bits (30), Expect = 3e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 83 tggacgatctcccagagccactgcttgcagagattgtcaagaggattaccaagacaagtg 142 |||| |||||||| || || |||| ||||||||||| |||||||||||||| ||||||| Sbjct: 279 tggaggatctcccggatgcattgctcgcagagattgtaaagaggattaccaacacaagtg 338 Query: 143 atcttaattctctttccctcgtgtcgaagc 172 | || || || ||||||| ||||| |||| Sbjct: 339 acctgaagtccatttcccttgtgtcaaagc 368 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 638 gaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||||||||| ||| |||||||| |||||| Sbjct: 813 gaatcagccagtatgatctcctaaaatttggccctggatgg 853 Score = 42.1 bits (21), Expect = 6.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagat 293 |||||| |||||||||||| || |||||||||| Sbjct: 457 ttcccgattccccaatttgttggaagtagagat 489
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152862 Score = 60.0 bits (30), Expect = 3e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 83 tggacgatctcccagagccactgcttgcagagattgtcaagaggattaccaagacaagtg 142 |||| |||||||| || || |||| ||||||||||| |||||||||||||| ||||||| Sbjct: 6248 tggaggatctcccggatgcattgctcgcagagattgtaaagaggattaccaacacaagtg 6307 Query: 143 atcttaattctctttccctcgtgtcgaagc 172 | || || || ||||||| ||||| |||| Sbjct: 6308 acctgaagtccatttcccttgtgtcaaagc 6337 Score = 50.1 bits (25), Expect = 0.027 Identities = 37/41 (90%) Strand = Plus / Plus Query: 638 gaatcagccagtatgatctcttaatgtttggcccaggatgg 678 |||||||||||||||||||| ||| |||||||| |||||| Sbjct: 6782 gaatcagccagtatgatctcctaaaatttggccctggatgg 6822 Score = 42.1 bits (21), Expect = 6.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 261 ttcccggttccccaatttggtgaaagtagagat 293 |||||| |||||||||||| || |||||||||| Sbjct: 6426 ttcccgattccccaatttgttggaagtagagat 6458
>dbj|AK240922.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065038H08, full insert sequence Length = 1850 Score = 56.0 bits (28), Expect = 4e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 119 tcaagaggattaccaagacaagtgatcttaattctctttccctcgtgtcgaagcagctct 178 ||||||||||| | | ||||| |||| |||||||||||||| |||||||||||||||| Sbjct: 263 tcaagaggattgcaaggacaaacaatctgaattctctttcccttgtgtcgaagcagctct 322 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 aaagtagagatcaattactctgggtggg 310 ||||||||||||||||||||||| |||| Sbjct: 422 aaagtagagatcaattactctggttggg 449 Score = 44.1 bits (22), Expect = 1.6 Identities = 64/78 (82%) Strand = Plus / Plus Query: 601 ggatcattgggagaacttgttgtaaaggattgtgatggaatcagccagtatgatctctta 660 |||||||||| |||||| || || ||| |||| | ||||| | |||||| || | ||| Sbjct: 743 ggatcattggaagaactagtagtgaagaattgcaaaggaatagggcagtatcatttttta 802 Query: 661 atgtttggcccaggatgg 678 |||||||||||||||||| Sbjct: 803 atgtttggcccaggatgg 820
>ref|NM_001059101.1| Oryza sativa (japonica cultivar-group) Os04g0371600 (Os04g0371600) mRNA, complete cds Length = 912 Score = 48.1 bits (24), Expect = 0.10 Identities = 27/28 (96%) Strand = Plus / Plus Query: 283 aaagtagagatcaattactctgggtggg 310 ||||||||||||||||||||||| |||| Sbjct: 100 aaagtagagatcaattactctggttggg 127 Score = 44.1 bits (22), Expect = 1.6 Identities = 64/78 (82%) Strand = Plus / Plus Query: 601 ggatcattgggagaacttgttgtaaaggattgtgatggaatcagccagtatgatctctta 660 |||||||||| |||||| || || ||| |||| | ||||| | |||||| || | ||| Sbjct: 421 ggatcattggaagaactagtagtgaagaattgcaaaggaatagggcagtatcatttttta 480 Query: 661 atgtttggcccaggatgg 678 |||||||||||||||||| Sbjct: 481 atgtttggcccaggatgg 498
>emb|AL691462.12| Mouse DNA sequence from clone RP23-267F7 on chromosome 2, complete sequence Length = 61310 Score = 44.1 bits (22), Expect = 1.6 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1039 gctctcagctgctctatgcttc 1060 |||||||||||||||||||||| Sbjct: 38374 gctctcagctgctctatgcttc 38395
>gb|EF039828.1| Synthetic construct Bacillus anthracis clone FLH246829.01L BA4597 gene, complete sequence Length = 948 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 93 aacaaaaacagaaaaaggaaaagag 117
>gb|CP000485.1| Bacillus thuringiensis str. Al Hakam, complete genome Length = 5257091 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4164093 aacaaaaacagaaaaaggaaaagag 4164069
>gb|CP000473.1| Solibacter usitatus Ellin6076, complete genome Length = 9965640 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 244 gccttggcatcgttgttttcc 264 ||||||||||||||||||||| Sbjct: 4515255 gccttggcatcgttgttttcc 4515235
>gb|AC130561.11| Rattus norvegicus BAC CH230-161F3 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 161423 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1501 aacaaaaacagaaacaggaaa 1521 ||||||||||||||||||||| Sbjct: 117464 aacaaaaacagaaacaggaaa 117484
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4165007 aacaaaaacagaaaaaggaaaagag 4164983
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4175859 aacaaaaacagaaaaaggaaaagag 4175835
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4176231 aacaaaaacagaaaaaggaaaagag 4176207
>gb|AY218563.1| Uncultured bacterium clone KD1-59 16S ribosomal RNA gene, partial sequence Length = 1452 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 984 ttgtgaagattatgagtttag 1004 ||||||||||||||||||||| Sbjct: 98 ttgtgaagattatgagtttag 118
>dbj|AK046735.1| Mus musculus adult male cortex cDNA, RIKEN full-length enriched library, clone:B530005J22 product:unclassifiable, full insert sequence Length = 1496 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 ttactctgggtgggaatctagtaat 321 ||||||||||||||| ||||||||| Sbjct: 601 ttactctgggtgggactctagtaat 625
>emb|AL365214.16| Human DNA sequence from clone RP11-506B6 on chromosome 6 Contains a fem-1 homolog a (C. elegans) (FEM1A) pseudogene, a keratin 18 (KRT18) pseudogene, a laminin receptor 1 (67kD, ribosomal protein SA) (LAMR1)(RPSA) pseudogene, a hepatocellular carcinoma-related putative tumor suppressor (LPTS) pseudogene and the 3' end of a novel gene, complete sequence Length = 210107 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 485 tcacttctactgggatttttc 505 ||||||||||||||||||||| Sbjct: 187599 tcacttctactgggatttttc 187619
>emb|AJ243674.3|SGR243674 Streptomyces griseus subsp. griseus (partial) ppk, mutT, pstS, pstC, pstA, pstB, pitH genes and ORF Length = 9302 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1425 ggaaggtgtgcagggagccgc 1445 ||||||||||||||||||||| Sbjct: 2452 ggaaggtgtgcagggagccgc 2432
>gb|AC154717.2| Mus musculus BAC clone RP24-369E16 from chromosome 17, complete sequence Length = 159625 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 297 ttactctgggtgggaatctagtaat 321 ||||||||||||||| ||||||||| Sbjct: 145926 ttactctgggtgggactctagtaat 145950
>gb|AC154187.2| Mus musculus BAC clone RP24-444N2 from chromosome 17, complete sequence Length = 224908 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 ttactctgggtgggaatctagtaat 321 ||||||||||||||| ||||||||| Sbjct: 133647 ttactctgggtgggactctagtaat 133623
>emb|AL772186.11| Mouse DNA sequence from clone RP23-281K3 on chromosome 4, complete sequence Length = 205714 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaa 1521 ||||||||||||||||||||| Sbjct: 133851 aacaaaaacagaaacaggaaa 133831
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4175732 aacaaaaacagaaaaaggaaaagag 4175708
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 6.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1501 aacaaaaacagaaacaggaaaagag 1525 |||||||||||||| |||||||||| Sbjct: 4122645 aacaaaaacagaaaaaggaaaagag 4122621
>emb|AL808011.11| Mouse DNA sequence from clone RP23-32O21 on chromosome 4, complete sequence Length = 147327 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 225 actcaacccttcaacagaagc 245 ||||||||||||||||||||| Sbjct: 20951 actcaacccttcaacagaagc 20931
>emb|CT025622.9| Mouse DNA sequence from clone RP23-443N15 on chromosome 17, complete sequence Length = 161938 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 286 gtagagatcaattactctggg 306 ||||||||||||||||||||| Sbjct: 28132 gtagagatcaattactctggg 28152
>emb|CT025670.8| Mouse DNA sequence from clone RP24-384G18 on chromosome 17, complete sequence Length = 199300 Score = 42.1 bits (21), Expect = 6.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 828 gccagaaactggacttcgttttctccttg 856 ||||||||||||||| |||||||| |||| Sbjct: 121857 gccagaaactggactgcgttttctacttg 121885
>emb|AL772170.14| Mouse DNA sequence from clone RP23-322G9 on chromosome 4, complete sequence Length = 195589 Score = 42.1 bits (21), Expect = 6.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1501 aacaaaaacagaaacaggaaa 1521 ||||||||||||||||||||| Sbjct: 134762 aacaaaaacagaaacaggaaa 134782 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 307,996,833 Number of extensions: 16067966 Number of successful extensions: 304917 Number of sequences better than 10.0: 48 Number of HSP's gapped: 304906 Number of HSP's successfully gapped: 176 Length of query: 1695 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1672 Effective length of database: 18,503,978,556 Effective search space: 30938652145632 Effective search space used: 30938652145632 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
