ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63k10 |
|---|---|
| Clone Library Name | barley_pub |
>Q12894:IFRD2_HUMAN Interferon-related developmental regulator 2 - Homo sapiens (Human)| Length = 442 Score = 118 bits (295), Expect = 1e-25 Identities = 107/345 (31%), Positives = 158/345 (45%), Gaps = 7/345 (2%) Frame = +2 Query: 551 LDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKGSIKEAC 730 L +Y+D L +K TR+ AL SL A S +L + + TL +KKG +E Sbjct: 77 LKEYVDCLTDKSAKTRQGALESLRLALASRLLPDFLLERRLTLADALEKCLKKGKGEEQA 136 Query: 731 LASRAIGLLSITLGAGSSSHETMVDSHPQLSKVL--QTWSDASKMISALECLAIITFVGA 904 LA+ +GLL + LG G E P L VL T S A+++ A L + +V A Sbjct: 137 LAAAVLGLLCVQLGPGPKGEELFHSLQPLLVSVLSDSTASPAARLHCA-SALGLGCYVAA 195 Query: 905 TDLAETELSLKAMWDVIHPKSGSNVGTVRKPKPP-----VLAAALSAWTFLLTTIGS*RI 1069 D+ + L + V G G+ P P +L+AAL AW LLT S +I Sbjct: 196 ADIQDLVSCLACLESVFSRFYGLG-GSSTSPVVPASLHGLLSAALQAWALLLTICPSTQI 254 Query: 1070 NTDSWKEPIAFLSTLLGAEDRAVRMAAGEALALCFELNLLXXXXXXXXXXXXXXXXXXKG 1249 + + L LL +E +R+AAGE +AL FEL + Sbjct: 255 -SHILDRQLPRLPQLLSSESVNLRIAAGETIALLFEL----------------ARDLEEE 297 Query: 1250 KLFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEESLKI 1429 ++ DM+AL + + LA++ K K + QR F+ +L V+ GEC EE ++ Sbjct: 298 FVYEDMEALCSVLRTLATD-----SNKYRAKADRRRQRSTFRAVLHSVEGGECEEEIVRF 352 Query: 1430 AGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNI 1564 +VL + SW+ FK LG G H+Q+N LL+DIF + Sbjct: 353 G--FEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGL 395
>P19182:IFRD1_MOUSE Interferon-related developmental regulator 1 - Mus musculus (Mouse)| Length = 449 Score = 107 bits (266), Expect = 2e-22 Identities = 104/390 (26%), Positives = 165/390 (42%), Gaps = 17/390 (4%) Frame = +2 Query: 542 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKGSIK 721 E+ L ID +K TR+AAL + +A S +L V + TL +KKG Sbjct: 79 EYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKVLYEFVLERRMTLTDSIERCLKKGKSD 138 Query: 722 EACLASRAIGLLSITLGAGSSSHETMVDSHPQLSKVLQTWSDASKMISALE----CLAII 889 E A+ +L I LG G S E + P L K++ D + I A + C + Sbjct: 139 EQRAAAAVASVLCIQLGPGFESEEILKTLGPILKKII---CDGAASIQARQTCATCFGVC 195 Query: 890 TFVGATDLAETELSLKAMWDVI---HPKSGSNVGTVRKPKPPVLAAALSAWTFLLTTIGS 1060 F+ D+ E +L+ ++ + K T P + ++L AWT LLT Sbjct: 196 CFIATDDITELYSTLECFENIFTKSYLKEKDTNVTCSTPNTVLHISSLLAWTLLLTIC-- 253 Query: 1061 *RINTDSWKEPIAF--LSTLLGAEDRAVRMAAGEALALCFELNLLXXXXXXXXXXXXXXX 1234 IN K + F L +LL +D +R+AAGE+LAL FEL Sbjct: 254 -PINEVKKKLELHFHKLPSLLSCDDVNMRIAAGESLALLFEL----------------AR 296 Query: 1235 XXXKGKLFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPE 1414 + DM +L + LA++ G K K + QR +F+ +L V+ + P Sbjct: 297 GMESDFFYEDMDSLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDVLRAVEERDFPT 351 Query: 1415 ESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNIKAD------- 1573 E++K +R + + SW + + FK LG G H+Q N L+++F + Sbjct: 352 ETVKFGPER--MYIDSWVKKHTYDTFKEVLGSGMQYHLQTNEFLRNVFELGPPVMLDAAT 409 Query: 1574 -KAETLSSNDKKIFRSGEEKGRALKLNKDR 1660 K +S ++ ++ S K R +K R Sbjct: 410 LKTMKISRFERHLYNSAAFKARTKARSKCR 439
>O00458:IFRD1_HUMAN Interferon-related developmental regulator 1 - Homo sapiens (Human)| Length = 451 Score = 106 bits (265), Expect = 3e-22 Identities = 102/390 (26%), Positives = 165/390 (42%), Gaps = 17/390 (4%) Frame = +2 Query: 542 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKGSIK 721 E+ L ID +K TR+AAL + +A S ML + + TL +KKG Sbjct: 81 EYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSD 140 Query: 722 EACLASRAIGLLSITLGAGSSSHETMVDSHPQLSKVLQTWSDASKMISALE----CLAII 889 E A+ +L I LG G S E + P L K++ D S + A + C + Sbjct: 141 EQRAAAALASVLCIQLGPGIESEEILKTLGPILKKII---CDGSASMQARQTCATCFGVC 197 Query: 890 TFVGATDLAETELSLKAMWDVI---HPKSGSNVGTVRKPKPPVLAAALSAWTFLLTTIGS 1060 F+ D+ E +L+ + ++ + K P + ++L AWT LLT Sbjct: 198 CFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLLTIC-- 255 Query: 1061 *RINTDSWKEPIAF--LSTLLGAEDRAVRMAAGEALALCFELNLLXXXXXXXXXXXXXXX 1234 IN K + F L +LL +D +R+AAGE+LAL FEL Sbjct: 256 -PINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFEL----------------AR 298 Query: 1235 XXXKGKLFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPE 1414 + DM++L + LA++ G K K + QR +F+ +L V+ + P Sbjct: 299 GIESDFFYEDMESLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDVLRAVEERDFPT 353 Query: 1415 ESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNIKAD------- 1573 E++K +R + + W + + FK LG G H+Q N L+++F + Sbjct: 354 ETIKFGPER--MYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAAT 411 Query: 1574 -KAETLSSNDKKIFRSGEEKGRALKLNKDR 1660 K +S ++ ++ S K R +K R Sbjct: 412 LKTMKISRFERHLYNSAAFKARTKARSKCR 441
>Q5S1U6:IFRD1_PIG Interferon-related developmental regulator 1 - Sus scrofa (Pig)| Length = 450 Score = 106 bits (264), Expect = 4e-22 Identities = 101/389 (25%), Positives = 166/389 (42%), Gaps = 16/389 (4%) Frame = +2 Query: 542 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKGSIK 721 E+ L ID +K TR+AAL + +A S ML + + TL +KKG Sbjct: 80 EYKLKGLIDLTLDKSAKTRQAALEGIKNALASRMLYEFILERRMTLTDSIERCLKKGKSD 139 Query: 722 EACLASRAIGLLSITLGAGSSSHETMVDSHPQLSKVLQTWSDASKMISALE----CLAII 889 E A+ +L I LG G S E + P L K++ D + I A + C + Sbjct: 140 EQRAAAALASVLCIQLGPGIESEEVLKTLGPVLKKII---CDGTASIQARQTCATCFGVC 196 Query: 890 TFVGATDLAETELSLKAMWDVIH----PKSGSNVGTVRKPKPPVLAAALSAWTFLLTTIG 1057 F+ D+ E +L+ + ++ + SNV P + ++L AWT LLT Sbjct: 197 CFIATDDITELYSTLQCLENIFTKSYLKEKDSNV-ICSTPNTALHISSLLAWTLLLTICP 255 Query: 1058 S*RINTDSWKEPIAFLSTLLGAEDRAVRMAAGEALALCFELNLLXXXXXXXXXXXXXXXX 1237 + + + L +LL ++D +R+AAGE+LAL FEL Sbjct: 256 LSEVK-KKLEMHVHKLPSLLSSDDVNMRIAAGESLALLFEL----------------ARG 298 Query: 1238 XXKGKLFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPEE 1417 + DM++L + LA++ G K K + QR +F+ IL V+ + P E Sbjct: 299 MESDFFYEDMESLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDILRAVEERDFPTE 353 Query: 1418 SLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNIKAD-------- 1573 ++K +R + + W + + FK LG G H+Q N L+++F + Sbjct: 354 TVKFGPER--MYIDCWVKKRTYDTFKEILGSGMQYHLQSNEFLRNVFELGPPVMLDAATL 411 Query: 1574 KAETLSSNDKKIFRSGEEKGRALKLNKDR 1660 K +S ++ ++ S K R +K R Sbjct: 412 KTMKISRFERHLYNSAAFKARTKARSKCR 440
>P20695:IFRD1_RAT Interferon-related developmental regulator 1 - Rattus norvegicus| (Rat) Length = 449 Score = 98.6 bits (244), Expect = 8e-20 Identities = 94/350 (26%), Positives = 150/350 (42%), Gaps = 9/350 (2%) Frame = +2 Query: 542 EFVLDKYIDALYEKRGSTREAALASLVDAFESFMLDGLVENKYATLLSLFNTSIKKGSIK 721 E+ L ID +K TR+AAL + +A S +L V + TL +KKG Sbjct: 79 EYKLKGLIDLTLDKSAKTRQAALEGVKNALSSKVLYEFVLERRMTLTDSIERCLKKGKSD 138 Query: 722 EACLASRAIGLLSITLGAGSSSHETMVDSHPQLSKVLQTWSDASKMISALE----CLAII 889 A+ +L I LG G S E + P L K++ D + I A + C + Sbjct: 139 GQRAAAALASVLCIQLGPGLESEEILKTLGPILKKII---CDGTASIQARQTCATCFGVC 195 Query: 890 TFVGATDLAETELSLKAMWDVI---HPKSGSNVGTVRKPKPPVLAAALSAWTFLLTTIGS 1060 F+ D+ E +L+ + + + K P + ++L AWT LLT Sbjct: 196 CFIATDDITELYSTLECLEGIFTKSYLKEKDTNVPCSTPNTVLHISSLLAWTLLLTIC-- 253 Query: 1061 *RINTDSWKEPIAF--LSTLLGAEDRAVRMAAGEALALCFELNLLXXXXXXXXXXXXXXX 1234 I+ K + F L +LL +D +R+AAGE+LAL FEL Sbjct: 254 -PISEVKKKLELHFHKLPSLLSCDDVNMRIAAGESLALLFEL----------------AR 296 Query: 1235 XXXKGKLFLDMQALKAKIAGLASNLSAEAGGKGADKKNLSDQRDLFQRILDFVKYGECPE 1414 + DM +L + LA++ G K K + QR +F+ +L V+ + P Sbjct: 297 GMESDFFYEDMDSLTQMLRALATD-----GNKHRAKVDKRKQRSVFRDVLRAVEERDFPT 351 Query: 1415 ESLKIAGKRDVLRVASWSELIQLNFFKRFLGRGFLKHVQDNGLLQDIFNI 1564 E++K +R + + SW + + FK LG G H+Q N L+++F + Sbjct: 352 ETVKFGPER--MYIDSWVKKHTYDTFKEALGSGMQYHLQTNEFLRNVFEL 399
>P53755:BSC5_YEAST Bypass of stop codon protein 5 - Saccharomyces cerevisiae (Baker's| yeast) Length = 489 Score = 34.7 bits (78), Expect = 1.5 Identities = 21/63 (33%), Positives = 32/63 (50%) Frame = -1 Query: 771 PSVIDSNPMARDARQASLIDPFLIEVLNRLSRVAYLFSTRPSSIKLSKASTNEANAASLV 592 P +NP++R+ L D F IE+ NRL + +FS +I + K EAN + + Sbjct: 406 PFGFQNNPISREKCLKDLED-FDIEIANRLGMIEKVFSKIERAIPIHKEDIQEANRSDQL 464 Query: 591 DPL 583 PL Sbjct: 465 SPL 467
>P33479:IE18_PRVKA Immediate-early protein IE180 - Pseudorabies virus (strain Kaplan)| (PRV) Length = 1446 Score = 33.9 bits (76), Expect = 2.5 Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = +2 Query: 47 QAQRENRRPRPGQPL-PIPDPAPSLLHGSSASPRPIRLRNP 166 + R RR R L P PDPAP+LL SS+S RLR P Sbjct: 921 EEDRGPRRKRRSLGLGPAPDPAPALLSSSSSSSEDDRLRRP 961
>Q47F82:LPXD_DECAR UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase -| Dechloromonas aromatica (strain RCB) Length = 347 Score = 33.5 bits (75), Expect = 3.2 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Frame = -1 Query: 930 DNSVSARSVAPTNVMMAKHSRAEIIFEASDQV*RTLESCGCESTIVS---CELLPAPSVI 760 D+ VAP +A +I F A+ + L +C + I+ E P P ++ Sbjct: 25 DSQTPISRVAP----LATAGEGDITFLANPKFRSQLSACKASAVILRPDVAEEFPGPRIV 80 Query: 759 DSNPMARDARQASLIDPF 706 NP A AR A+L++P+ Sbjct: 81 TGNPYAYYARVATLLNPY 98
>Q6BDS1:SPI1_RAT Transcription factor PU.1 - Rattus norvegicus (Rat)| Length = 271 Score = 32.3 bits (72), Expect = 7.2 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +2 Query: 41 HRQAQRENRRPRPGQPLPIPD-------PAPSLLHGSSASPRPIRL 157 H+Q+ E R PL + D P P LLHG + S + IRL Sbjct: 128 HQQSSDEEEGERQSPPLEVSDGEADGLEPGPGLLHGETGSKKKIRL 173
>P17433:SPI1_MOUSE Transcription factor PU.1 - Mus musculus (Mouse)| Length = 272 Score = 32.3 bits (72), Expect = 7.2 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Frame = +2 Query: 41 HRQAQRENRRPRPGQPLPIPD-------PAPSLLHGSSASPRPIRL 157 H+Q+ E R PL + D P P LLHG + S + IRL Sbjct: 129 HQQSSDEEEGERQSPPLEVSDGEADGLEPGPGLLHGETGSKKKIRL 174
>P58392:KCNN3_PIG Small conductance calcium-activated potassium channel protein 3 -| Sus scrofa (Pig) Length = 724 Score = 32.3 bits (72), Expect = 7.2 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +2 Query: 53 QRENRRPRPGQPLPIPDPAPSLLHGSSASPRPIRLRNPQEQ 175 +++ ++P P P P P AP G P+P++L+ Q+Q Sbjct: 29 EQQQQQPPPPPPPPAPPAAPQQPPGPPLQPQPLQLQQQQQQ 69
>Q9H091:ZMY15_HUMAN Zinc finger MYND domain-containing protein 15 - Homo sapiens| (Human) Length = 703 Score = 32.0 bits (71), Expect = 9.4 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = +2 Query: 41 HRQAQRENRRPRPGQPLPIPDPAPSLLHGSSASPRPIRLRNPQEQP 178 ++ AQ RP PG P P P P SA P P R R +++P Sbjct: 658 YKPAQGSGARPAPGPPPPSPTP--------SAPPAPTRRRRGEKKP 695
>Q9ULV5:HSF4_HUMAN Heat shock factor protein 4 - Homo sapiens (Human)| Length = 493 Score = 32.0 bits (71), Expect = 9.4 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = +2 Query: 47 QAQRENRRPRPGQPLPIPDPAPSLLHGSSASPR----PIRLRNPQE 172 + R ++P PG P IPD P L SP P+ L+ PQE Sbjct: 343 EGPRNAQQPEPGDPREIPDRGPLGLESGDRSPESLLPPMLLQPPQE 388
>P18090:ADRB1_RAT Beta-1 adrenergic receptor - Rattus norvegicus (Rat)| Length = 466 Score = 32.0 bits (71), Expect = 9.4 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%) Frame = +2 Query: 71 PRPGQPLPIPDPAP-----SLLHGSSASPRPIRLRNPQEQ 175 PRP P P P P P SL +G S+ RP RL +EQ Sbjct: 270 PRPPSPAPSPSPGPPRPADSLANGRSSKRRPSRLVALREQ 309 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 278,023,017 Number of extensions: 5576503 Number of successful extensions: 19402 Number of sequences better than 10.0: 14 Number of HSP's gapped: 19177 Number of HSP's successfully gapped: 14 Length of query: 643 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 523 Effective length of database: 67,771,039 Effective search space: 35444253397 Effective search space used: 35444253397 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
