ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61f12 |
|---|---|
| Clone Library Name | barley_pub |
>Q31PU5:AROK_SYNP7 Shikimate kinase - Synechococcus sp. (strain PCC 7942) (Anacystis| nidulans R2) Length = 190 Score = 65.1 bits (157), Expect = 6e-10 Identities = 37/106 (34%), Positives = 55/106 (51%) Frame = +2 Query: 590 LTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAE 769 L G+ + +VG + K +AE +GY V T L+E+ T +S+ A++G + Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66 Query: 770 AECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 E VLE ++S+ R VVAT G G R + W YL G +WL V Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWLDV 109
>Q5N4D3:AROK_SYNP6 Shikimate kinase - Synechococcus sp. (strain ATCC 27144 / PCC 6301| / SAUG 1402/1) (Anacystis nidulans) Length = 190 Score = 65.1 bits (157), Expect = 6e-10 Identities = 37/106 (34%), Positives = 55/106 (51%) Frame = +2 Query: 590 LTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAE 769 L G+ + +VG + K +AE +GY V T L+E+ T +S+ A++G + Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66 Query: 770 AECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 E VLE ++S+ R VVAT G G R + W YL G +WL V Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWLDV 109
>P72796:AROK_SYNY3 Shikimate kinase - Synechocystis sp. (strain PCC 6803)| Length = 189 Score = 58.2 bits (139), Expect = 8e-08 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 14/153 (9%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 I + L G+++ ++G V +AE +GY L+E K++ A +G D Sbjct: 6 IKEQLQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGED 65 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS-------EA 916 + + E VL L++ R+V+AT GG R W YLH G +WL S Sbjct: 66 TFRDLETEVLGHLAAQTRSVIATGGG---VVLRRQNWSYLHHGLVIWLDGSLELLLARLQ 122 Query: 917 GDEA-------SAKEEARRSVSTGSVAYAKADV 994 GDEA + +E ++ YA+AD+ Sbjct: 123 GDEARPLLQVENLEERLGNLLAQRQPLYAQADL 155
>Q3MFQ9:AROK_ANAVT Shikimate kinase - Anabaena variabilis (strain ATCC 29413 / PCC| 7937) Length = 181 Score = 58.2 bits (139), Expect = 8e-08 Identities = 34/111 (30%), Positives = 56/111 (50%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 ++ LL G++++++G V +A+ +GY + T ++ A +KS++ A G Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEA 60 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS 910 + E VL + S+ + VAT G G R + W YLH G VWL VS Sbjct: 61 GFRQIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLIVWLDVS 108
>Q7NH27:AROK_GLOVI Shikimate kinase - Gloeobacter violaceus| Length = 177 Score = 57.8 bits (138), Expect = 1e-07 Identities = 54/173 (31%), Positives = 71/173 (41%), Gaps = 15/173 (8%) Frame = +2 Query: 587 LLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVA 766 +L G+S+++VG V + +AE +GY V L+E + K V EG Sbjct: 1 MLKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALIEQVSGKRVGEIFEREGEAVFR 60 Query: 767 EAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS----------EA 916 + E VL +S++ R VVAT GG A W YLH G VWL E Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGVVLARR---NWGYLHHGVVVWLDADIETLLGRVEHEP 117 Query: 917 GDE---ASAKEEARRSVSTGSVA--YAKADVVVKLGGWDPEYTQAVAQGCLVA 1060 G A R G A YA+ADV V G P + + CL A Sbjct: 118 GTRPLLAGGDRHLRLVELLGERARLYAQADVRVSAAGLPPAVAEETLR-CLAA 169
>Q8YXG9:AROK_ANASP Shikimate kinase - Anabaena sp. (strain PCC 7120)| Length = 181 Score = 57.4 bits (137), Expect = 1e-07 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 4/114 (3%) Frame = +2 Query: 578 ITQLLTGISIHIVG----DSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAA 745 ++ LL G++++++G T + +AKE+ G G+L T ++ AT+KS++ A Sbjct: 1 MSSLLQGVNLYLIGMMGAGKTTVGHLLAKEL--GYGFLD--TDNVIAQATKKSINEIFAE 56 Query: 746 EGVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 G + E VL + S+ + VAT G G R + W YLH G +WL V Sbjct: 57 AGEAGFRQIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWLDV 107
>Q2JKT7:AROK_SYNJB Shikimate kinase - Synechococcus sp. (strain JA-2-3B'a(2-13))| (Cyanobacteria bacterium Yellowstone B-Prime) Length = 187 Score = 55.8 bits (133), Expect = 4e-07 Identities = 35/107 (32%), Positives = 50/107 (46%) Frame = +2 Query: 590 LTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAE 769 L G++++++G V E+A + + T L+E S+ A G + Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQVGGSSIAQIFAEHGEAYFRD 69 Query: 770 AECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS 910 E VL LSS+ R V+AT G G R W YLH G TVWL V+ Sbjct: 70 LETQVLAQLSSYTRLVIATGG---GIVLRPKNWSYLHHGLTVWLDVA 113
>Q3AH55:AROK_SYNSC Shikimate kinase - Synechococcus sp. (strain CC9605)| Length = 199 Score = 52.4 bits (124), Expect = 4e-06 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 15/183 (8%) Frame = +2 Query: 569 TAGITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAE 748 T + + L+G S+++VG + + +AE +GY V ++E A S+ + Sbjct: 13 TPTLKKRLSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADAVIEQAAGCSIPEIFERD 72 Query: 749 GVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV--SEAGD 922 G E VL ++S VVAT G G ++ + W LHSG +WL V + Sbjct: 73 GDAGFRSLESQVLSAISQRHSLVVATGG---GVVTQPENWGLLHSGIVIWLDVVPDQLLQ 129 Query: 923 EASAKEEARRSVSTGS-------------VAYAKADVVVKLGGWDPEYTQAVAQGCLVAL 1063 +A R + T Y++AD+ V + PE AVA G L L Sbjct: 130 RLNADSTVRPLLQTTDPEASLNALLNERRPLYSEADLTVVINDETPE---AVADGILQLL 186 Query: 1064 KQL 1072 L Sbjct: 187 PSL 189
>Q2JRJ6:AROK_SYNJA Shikimate kinase - Synechococcus sp. (strain JA-3-3Ab)| (Cyanobacteria bacterium Yellowstone A-Prime) Length = 189 Score = 52.4 bits (124), Expect = 4e-06 Identities = 34/107 (31%), Positives = 48/107 (44%) Frame = +2 Query: 590 LTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAE 769 L G++++++G + E+A + T L+E S+ A +G E Sbjct: 10 LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGCSIAQIFAEQGEAHFRE 69 Query: 770 AECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVS 910 E VL LS + R VVAT GG R W YLH G TVWL + Sbjct: 70 LETQVLAQLSGYTRLVVATGGG---IVLRPKNWSYLHHGLTVWLDAA 113
>Q8DKH7:AROK_SYNEL Shikimate kinase - Synechococcus elongatus (Thermosynechococcus| elongatus) Length = 183 Score = 51.2 bits (121), Expect = 1e-05 Identities = 35/110 (31%), Positives = 52/110 (47%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 + + L G +I++VG + +A+ +GY V T ++ + Q+ + A EG Sbjct: 3 LQERLGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVITAFRQRPIREIFAQEGEP 62 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 + E E VL +SS+ VVAT G G W YLH G VWL V Sbjct: 63 AFRELEQQVLAQVSSYHHLVVATGG---GIVLNPMNWSYLHHGIVVWLHV 109
>Q7U469:AROK_SYNPX Shikimate kinase - Synechococcus sp. (strain WH8102)| Length = 191 Score = 50.8 bits (120), Expect = 1e-05 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 15/183 (8%) Frame = +2 Query: 569 TAGITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAE 748 T + Q L G S+++VG + + +AE +GY V ++E A S+ + Sbjct: 5 TLSLKQRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADAVIEQAAGCSIPEIFERD 64 Query: 749 GVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV--SEAGD 922 G E VL ++ VVAT G G ++ + W LHSG VWL V + Sbjct: 65 GEAGFRALESQVLNAIGQRHSLVVATGG---GVVTQQENWGLLHSGIVVWLDVVPEQLMQ 121 Query: 923 EASAKEEARRSVSTGS-------------VAYAKADVVVKLGGWDPEYTQAVAQGCLVAL 1063 A R + T YA+AD+ V + + E AVA G L L Sbjct: 122 RLRADSTVRPLLQTEDPDAALNALLNQRRPLYAEADLTVVI---NQETPLAVADGILQLL 178 Query: 1064 KQL 1072 L Sbjct: 179 PSL 181
>Q3B009:AROK_SYNS9 Shikimate kinase - Synechococcus sp. (strain CC9902)| Length = 191 Score = 48.9 bits (115), Expect = 5e-05 Identities = 31/113 (27%), Positives = 53/113 (46%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 + + L+G SI+++G + + +A+ +GY V ++E ++ +G Sbjct: 8 LKERLSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADAVIEQVAGCTIPEIFERDGEA 67 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSEA 916 E VL ++S VVAT GG ++ + W LHSG VWL V+ A Sbjct: 68 GFRSIESQVLNAISQRHSLVVATGGG---VVTKPENWGQLHSGIVVWLDVNRA 117
>Q46HR4:AROK_PROMT Shikimate kinase - Prochlorococcus marinus (strain NATL2A)| Length = 198 Score = 48.5 bits (114), Expect = 6e-05 Identities = 29/110 (26%), Positives = 53/110 (48%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 + + L G +I ++G +A+ I Y V T +++E A+++S+ + +G Sbjct: 10 LKEKLGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDDVIEKASKQSISSIFEKDGEK 69 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 + E VL+ +S H V+AT G G + + W LH G +WL + Sbjct: 70 VFRDVEKKVLKEISQHHSLVIATGG---GLVTLPENWGILHQGIVIWLDL 116
>Q7VE85:AROK_PROMA Shikimate kinase - Prochlorococcus marinus| Length = 190 Score = 47.4 bits (111), Expect = 1e-04 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 16/165 (9%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 + + L G I++VG +A+ + Y + EL+E + SV EG + Sbjct: 10 VIKKLGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELIEKVAKSSVSQIFREEGEN 69 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLS----------- 904 + E VL+ + VVAT GG +R + W LH G +WL Sbjct: 70 GFRDIETQVLKQIGQRHSLVVATGGG---LVTRSENWGVLHQGIVIWLDPNRELLFARLK 126 Query: 905 -----VSEAGDEASAKEEARRSVSTGSVAYAKADVVVKLGGWDPE 1024 V D K+ + ++YA+AD+ + + PE Sbjct: 127 SDKTVVRPLLDNKDPKDVLDSLIKQRYLSYAEADLHISIERETPE 171
>Q9SJ05:AROK_ARATH Probable shikimate kinase, chloroplast precursor - Arabidopsis| thaliana (Mouse-ear cress) Length = 292 Score = 46.6 bits (109), Expect = 2e-04 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 1/125 (0%) Frame = +2 Query: 536 WPDIDESWKSLTAGITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESAT 715 +P ++ K + L G S+++VG V K +++ +GY L+E A Sbjct: 82 YPFDEDILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAM 141 Query: 716 Q-KSVDTWVAAEGVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFT 892 SV G + E L+ LSS + VV+T GG A R W+Y+H G + Sbjct: 142 NGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGG---AVIRPINWKYMHKGIS 198 Query: 893 VWLSV 907 +WL V Sbjct: 199 IWLDV 203
>Q7V904:AROK_PROMM Shikimate kinase - Prochlorococcus marinus (strain MIT 9313)| Length = 192 Score = 46.2 bits (108), Expect = 3e-04 Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 15/164 (9%) Frame = +2 Query: 578 ITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVD 757 + Q L G ++++VG + + +AE + Y V T ++E + + + EG Sbjct: 10 LKQRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQLAGQPIPKIFSEEGEA 69 Query: 758 SVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV---------- 907 E VL ++ VVAT GG S+ + W LH G +WL+ Sbjct: 70 GFRTMESQVLNAIGQRHSLVVATGGG---IVSKPENWGVLHQGIVIWLNPGREELLRRLN 126 Query: 908 SEAGDEASAKEEARRSVSTGSVA-----YAKADVVVKLGGWDPE 1024 +++G+ + E + A Y +AD+ V++G +P+ Sbjct: 127 ADSGNRPLLQTEDPEAAFDCLFAERLPLYCEADLHVEVGAEEPD 170
>Q00497:AROK_SOLLC Shikimate kinase, chloroplast precursor - Solanum lycopersicum| (Tomato) (Lycopersicon esculentum) Length = 300 Score = 44.7 bits (104), Expect = 0.001 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 1/120 (0%) Frame = +2 Query: 551 ESWKSLTAGITQLLTGISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQK-SV 727 E+ K+ + + L G +++VG V + +AE +GY L+E A +V Sbjct: 89 ETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIEQAVGGITV 148 Query: 728 DTWVAAEGVDSVAEAECVVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSV 907 G + E VL LS R VV+T GG A R W+++H G +VWL V Sbjct: 149 AEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGG---AVVRPINWRHMHKGISVWLDV 205
>Q67N09:AROK_SYMTH Shikimate kinase - Symbiobacterium thermophilum| Length = 174 Score = 37.7 bits (86), Expect = 0.11 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Frame = +2 Query: 599 ISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAEC 778 ++I +VG AV + +AE +G V T L+E+ ++V AAEG + E Sbjct: 1 MNIVLVGLMGSGKTAVGRLLAERLGRPFVDTDRLVEADAGRTVADIFAAEGEEGFRRREA 60 Query: 779 VVLESLSSHVRTVVATLGGKQGAASRFDKWQYL-HSGFTVWLSVSEAG--DEASAKEEAR 949 V+ ++ V+AT G GA R + + L +GF +WL D A + R Sbjct: 61 EVVARAAAGDNQVIATGG---GAVLRTENREALRRTGFVIWLDAEPETLYDRARGQGLHR 117 Query: 950 RSVSTG 967 R + +G Sbjct: 118 RPLLSG 123
>Q8ZC15:AROL_YERPE Shikimate kinase 2 - Yersinia pestis| Length = 174 Score = 37.4 bits (85), Expect = 0.15 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Frame = +2 Query: 602 SIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECV 781 +I +VG + K +A+ +GY V T ++ +Q +V V +EG D E + Sbjct: 4 TIFMVGARGAGKTTIGKALAQALGYRFVDTDLFMQQTSQMTVAEVVESEGWDGFRLRESM 63 Query: 782 VLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSE---AGDEASAKEEARR 952 L+++++ +TVVAT GG S ++ G ++L S A A EEA+R Sbjct: 64 ALQAVTA-PKTVVATGGG--AVLSSENRAFMRDHGRVIYLRASAAVLAKRLAEDPEEAQR 120 Query: 953 SVSTG 967 TG Sbjct: 121 PSLTG 125
>Q66DY2:AROL_YERPS Shikimate kinase 2 - Yersinia pseudotuberculosis| Length = 174 Score = 37.0 bits (84), Expect = 0.19 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%) Frame = +2 Query: 602 SIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECV 781 +I +VG + K +A+ +GY V T ++ +Q +V V +EG D E + Sbjct: 4 TIFMVGARGAGKTTIGKALAQALGYRFVDTDLFMQQTSQMTVAEVVESEGWDGFRLRESM 63 Query: 782 VLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSE---AGDEASAKEEARR 952 L+++++ +TV+AT GG S ++ G ++L S A A EEA+R Sbjct: 64 ALQAVTA-PKTVIATGGG--AVLSSENRAFMRDHGRVIYLRASAAVLAKRLAEDPEEAQR 120 Query: 953 SVSTG 967 TG Sbjct: 121 PSLTG 125
>Q7UKZ2:HEM1_RHOBA Glutamyl-tRNA reductase - Rhodopirellula baltica| Length = 426 Score = 36.6 bits (83), Expect = 0.25 Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%) Frame = +2 Query: 278 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTL--FD 451 D E D+ + ++ D+ +G S+ + VD T + AK G + ++++ FD Sbjct: 231 DAESMDSLHDQIVQADL-LIGTTSAEEPIVDAS-TFAALNAKRGGRIMLVLDLAVPRDFD 288 Query: 452 RVKSSET---IWFIDEDQLVVNLKKVEQELKWPD----IDESWKSLTAGITQLLTGISIH 610 V E ++ ID+ Q N + E+E +WP IDE + Q TG I Sbjct: 289 PVIGDEPGVYLYQIDDLQAACNRNRREREKQWPKAKKIIDEEVDGFFQSLQQRATGPVIR 348 Query: 611 IVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVD 730 + + D + A+E+ G L T ++ +KS D Sbjct: 349 RLRERAD--KVKAEELQRLFGKLNGSTDTAMQKEIEKSFD 386
>Q63525:NUDC_RAT Nuclear migration protein nudC - Rattus norvegicus (Rat)| Length = 332 Score = 35.4 bits (80), Expect = 0.55 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2 Query: 278 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTLFDRV 457 +Y +T T E++L + +DV VD+ L + K + G L++ V Sbjct: 172 NYRWTQTLSELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQAPVID----GELYNEV 227 Query: 458 KSSETIWFIDEDQLV-VNLKKVEQELKW 538 K E+ W I++ ++V V+L+K+ + W Sbjct: 228 KVEESSWLIEDGKVVTVHLEKINKMEWW 255
>Q5ZIN1:NUDC_CHICK Nuclear migration protein nudC - Gallus gallus (Chicken)| Length = 341 Score = 35.4 bits (80), Expect = 0.55 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = +2 Query: 278 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTLFDRV 457 +Y +T T E++L + +DV VD+ L + K + G LF+ V Sbjct: 181 NYRWTQTLSELDLAIPFKVTFRLKGKDVVVDIQRRRLRVGLKGHPPVID----GELFNEV 236 Query: 458 KSSETIWFIDEDQLV-VNLKKVEQELKW 538 K E+ W I++ + V V+L+K+ + W Sbjct: 237 KVEESSWLIEDGKTVTVHLEKINKMEWW 264
>O35685:NUDC_MOUSE Nuclear migration protein nudC - Mus musculus (Mouse)| Length = 332 Score = 34.7 bits (78), Expect = 0.94 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2 Query: 278 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTLFDRV 457 +Y +T T E++L + +DV VD+ L + K + G L++ V Sbjct: 172 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVD----GELYNEV 227 Query: 458 KSSETIWFIDEDQLV-VNLKKVEQELKW 538 K E+ W I++ ++V V+L+K+ + W Sbjct: 228 KVEESSWLIEDGKVVTVHLEKINKMEWW 255
>Q9Y266:NUDC_HUMAN Nuclear migration protein nudC - Homo sapiens (Human)| Length = 331 Score = 33.5 bits (75), Expect = 2.1 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2 Query: 278 DYEFTDTTGEVELRLDIGKLGIESSRDVFVDVDDTSLLIRAKSDGTLRTLMNVGTLFDRV 457 +Y +T T E++L + +D+ VD+ L + K + G L++ V Sbjct: 171 NYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIID----GELYNEV 226 Query: 458 KSSETIWFIDEDQLV-VNLKKVEQELKW 538 K E+ W I++ ++V V+L+K+ + W Sbjct: 227 KVEESSWLIEDGKVVTVHLEKINKMEWW 254
>Q7RYV5:TCTP_NEUCR Translationally-controlled tumor protein homolog - Neurospora crassa| Length = 170 Score = 32.7 bits (73), Expect = 3.6 Identities = 33/136 (24%), Positives = 53/136 (38%) Frame = +2 Query: 611 IVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECVVLE 790 I+ DS D+ E +GI Y C + E A Q + +AE D + V + Sbjct: 13 IISDSYDLKEV------DGIAYEVDCAM-IEEGAVQVDIGANASAEEADEALDDGVVKVN 65 Query: 791 SLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSEAGDEASAKEEARRSVSTGS 970 ++ R +++FDK YL SV A E +E + T + Sbjct: 66 NVVHSFRL----------QSTQFDKKGYLVYLKGYMKSVKNALKEQGKSDEEIKDFETKA 115 Query: 971 VAYAKADVVVKLGGWD 1018 A+AK ++ K W+ Sbjct: 116 SAFAKNVILAKFKDWE 131
>P42768:WASP_HUMAN Wiskott-Aldrich syndrome protein - Homo sapiens (Human)| Length = 502 Score = 32.0 bits (71), Expect = 6.1 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +2 Query: 1079 ADKKLAGKKSLY-IRLGCRGDWPNIEPPGWDPQSDAPPTNI*SSFRNLY 1222 ADKK +GKK + +G + ++ GWDPQ+ N+ R+L+ Sbjct: 223 ADKKRSGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLF 271
>Q6C9M6:SWC4_YARLI SWR1-complex protein 4 - Yarrowia lipolytica (Candida lipolytica)| Length = 504 Score = 32.0 bits (71), Expect = 6.1 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Frame = +2 Query: 446 FDRVKSSETIWFIDEDQLVVNLKKVEQELKWPDIDESWK-------SLTAGITQLLTGIS 604 +D +K + W ++E + +++L E +L+WP I + W+ ++ G T+ G Sbjct: 132 YDGLKLATPGWTLEETRYLMHLCS-EFDLRWPVIHDRWEWQTDQDVTMATGETKGAEGTE 190 Query: 605 IHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECVV 784 + + D+ A KE E SE ESA A V+ + E V Sbjct: 191 SKVKEEDKDVEMADVKEEKENKDESNKEKSEKKESAPPDG-----TARTVEDLKERFYNV 245 Query: 785 LESLSSH 805 + ++S H Sbjct: 246 VSAMSKH 252
>P98077:SHC2_HUMAN SHC-transforming protein 2 - Homo sapiens (Human)| Length = 551 Score = 32.0 bits (71), Expect = 6.1 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Frame = +2 Query: 599 ISIHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAEC 778 ISIHI D ++ +++ ++P S S + +VA D + + C Sbjct: 191 ISIHISTDGLSLSVPATRQVIAN-HHMP---SISFASGGDTDMTDYVAYVAKDPINQRAC 246 Query: 779 VVLESLSSHVRTVVATLGGKQGAASRFDKWQYLHSGFTVWLSVSE-AGDEASA 934 +LE +++++T+G Q RF QYLHS V L AG E SA Sbjct: 247 HILECCEGLAQSIISTVG--QAFELRFK--QYLHSPPKVALPPERLAGPEESA 295
>P10880:AROL_ERWCH Shikimate kinase 2 - Erwinia chrysanthemi| Length = 173 Score = 31.6 bits (70), Expect = 8.0 Identities = 25/77 (32%), Positives = 38/77 (49%) Frame = +2 Query: 605 IHIVGDSTDINEAVAKEIAEGIGYLPVCTSELLESATQKSVDTWVAAEGVDSVAEAECVV 784 I +VG V +E+A +GY V T ++ + +V VAAEG E Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEA 64 Query: 785 LESLSSHVRTVVATLGG 835 L+++++ R VVAT GG Sbjct: 65 LQAVATPNR-VVATGGG 80
>Q9Y2J4:AMOL2_HUMAN Angiomotin-like protein 2 - Homo sapiens (Human)| Length = 779 Score = 31.6 bits (70), Expect = 8.0 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = -2 Query: 979 IGHAPSANASPGLLFGRGFITGLGHRQPHRESRMKVL 869 I H+P SP F G +TG GHR ESR+KVL Sbjct: 599 IRHSPQP--SPSSSFNEGLLTG-GHRHQEMESRLKVL 632 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 202,360,908 Number of extensions: 3865639 Number of successful extensions: 10459 Number of sequences better than 10.0: 31 Number of HSP's gapped: 10442 Number of HSP's successfully gapped: 31 Length of query: 448 Length of database: 100,686,439 Length adjustment: 116 Effective length of query: 332 Effective length of database: 68,868,219 Effective search space: 22864248708 Effective search space used: 22864248708 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
