| Clone Name | FLbaf61f12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001072025.1| Oryza sativa (japonica cultivar-group) Os10g0577700 (Os10g0577700) mRNA, complete cds Length = 1549 Score = 672 bits (339), Expect = 0.0 Identities = 738/871 (84%) Strand = Plus / Plus Query: 301 cggagaggtggagctgaggctggacataggaaagcttggcatcgagagttcaagagatgt 360 |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 313 cggagaggtggagctgaggctggacataggaaagctcggcattgagaattcaagagatgt 372 Query: 361 ttttgttgacgtcgatgacacgtccctgctcatcagagccaagtctgacggaacactgag 420 ||||||||||||||||| ||||| ||| | ||||||||||||| || || |||||| | Sbjct: 373 atttgttgacgtcgatgatacgtctctgttggtcagagccaagtcggatgggacactgcg 432 Query: 421 gactttgatgaatgtcgggacgctattcgacagggttaagtcttctgagacgatatggtt 480 ||||||||| ||||| || || || ||| |||||||||||||||| |||||||| Sbjct: 433 gactttgatcaatgttaaacaactctttgataggattaagtcttctgagactatatggtt 492 Query: 481 cattgatgaggatcagctggtggtgaacctgaagaaagtcgagcaggaattgaaatggcc 540 ||||||||||||||| |||| ||||| || |||||||| ||||| || |||||||||| Sbjct: 493 cattgatgaggatcaattggtagtgaatctaaagaaagttgagcaagagctgaaatggcc 552 Query: 541 cgacattgatgaatcatggaaatccctcactgctgggatcacacagttattgacagggat 600 ||||||||||||||| ||| ||||||| ||| |||| ||||| ||| | ||||||||||| Sbjct: 553 cgacattgatgaatcttgggaatcccttacttctggaatcactcagcttttgacagggat 612 Query: 601 cagcattcacatagttggagattccacggatatcaacgaggcggtcgctaaagagattgc 660 || |||| || ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 613 tagtgttcatattgttggtgattccacagatataaacgaggcagttgctaaagaaatagc 672 Query: 661 tgagggcatcgggtatcttccagtttgcaccagtgagctgctagagagtgccactcaaaa 720 |||||| || || || |||||||| ||||| |||||||||||||| |||||||| |||| Sbjct: 673 tgagggaattggttaccttccagtctgcacaagtgagctgctagaaagtgccaccgaaaa 732 Query: 721 gtccgttgatacatgggtggctgcggaaggggtggactcagtagctgaagcggaatgtgt 780 ||| |||| | |||| ||||| ||||||| ||||| || ||||| ||||| |||||||| Sbjct: 733 gtctattgacaaatggttggcttcggaaggagtggattcggtagcagaagctgaatgtgt 792 Query: 781 tgtcctagaaagccttagcagccatgtccgtaccgtggtagcgactctgggtggcaagca 840 ||| || |||||||||||||||||||| ||||| || ||||| |||||||| || ||||| Sbjct: 793 tgtgctggaaagccttagcagccatgttcgtacagtcgtagcaactctggggggaaagca 852 Query: 841 aggagcggcgagcaggttcgacaaatggcagtaccttcattctggattcacggtgtggtt 900 |||||| || ||||| || || ||||||||||| |||||| ||||||| ||||| ||||| Sbjct: 853 aggagcagctagcagatttgataaatggcagtatcttcatgctggatttacggtttggtt 912 Query: 901 gtcggtgtccgaggccggtgatgaagcctctgccaaagaggaggccaggagaagcgttag 960 |||||| ||||| ||| | |||||||| ||||||||||| |||||| | ||||| || || Sbjct: 913 gtcggtctccgatgccagcgatgaagcttctgccaaagaagaggcccgtagaagtgtgag 972 Query: 961 cactgggagcgtggcctatgcgaaggcggatgtggtggtgaagctgggtggatgggaccc 1020 | | || | || || || ||||| || ||||| || |||||||| ||||||||||| || Sbjct: 973 ctcgggaaatgttgcgtacgcgaaagctgatgtagtagtgaagcttggtggatgggatcc 1032 Query: 1021 ggagtacacgcaagctgtggcacagggctgccttgttgccttgaagcagctcaccttggc 1080 ||||||||| | |||||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1033 ggagtacacacgagctgttgcccagggttgccttgtggccttgaagcagctaacattggc 1092 Query: 1081 agataagaagctagcagggaagaagagcctttacatcaggctaggctgtcgaggggactg 1140 ||| |||||||||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct: 1093 agacaagaagctagcaggtaagaagagcctatacatgaggctgggatgccgaggggattg 1152 Query: 1141 gcccaacatcgagccacccggctgggatcct 1171 ||||||||||||||| ||||||||||||||| Sbjct: 1153 gcccaacatcgagcctcccggctgggatcct 1183
>dbj|AK100237.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052F21, full insert sequence Length = 1551 Score = 672 bits (339), Expect = 0.0 Identities = 738/871 (84%) Strand = Plus / Plus Query: 301 cggagaggtggagctgaggctggacataggaaagcttggcatcgagagttcaagagatgt 360 |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 314 cggagaggtggagctgaggctggacataggaaagctcggcattgagaattcaagagatgt 373 Query: 361 ttttgttgacgtcgatgacacgtccctgctcatcagagccaagtctgacggaacactgag 420 ||||||||||||||||| ||||| ||| | ||||||||||||| || || |||||| | Sbjct: 374 atttgttgacgtcgatgatacgtctctgttggtcagagccaagtcggatgggacactgcg 433 Query: 421 gactttgatgaatgtcgggacgctattcgacagggttaagtcttctgagacgatatggtt 480 ||||||||| ||||| || || || ||| |||||||||||||||| |||||||| Sbjct: 434 gactttgatcaatgttaaacaactctttgataggattaagtcttctgagactatatggtt 493 Query: 481 cattgatgaggatcagctggtggtgaacctgaagaaagtcgagcaggaattgaaatggcc 540 ||||||||||||||| |||| ||||| || |||||||| ||||| || |||||||||| Sbjct: 494 cattgatgaggatcaattggtagtgaatctaaagaaagttgagcaagagctgaaatggcc 553 Query: 541 cgacattgatgaatcatggaaatccctcactgctgggatcacacagttattgacagggat 600 ||||||||||||||| ||| ||||||| ||| |||| ||||| ||| | ||||||||||| Sbjct: 554 cgacattgatgaatcttgggaatcccttacttctggaatcactcagcttttgacagggat 613 Query: 601 cagcattcacatagttggagattccacggatatcaacgaggcggtcgctaaagagattgc 660 || |||| || ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 614 tagtgttcatattgttggtgattccacagatataaacgaggcagttgctaaagaaatagc 673 Query: 661 tgagggcatcgggtatcttccagtttgcaccagtgagctgctagagagtgccactcaaaa 720 |||||| || || || |||||||| ||||| |||||||||||||| |||||||| |||| Sbjct: 674 tgagggaattggttaccttccagtctgcacaagtgagctgctagaaagtgccaccgaaaa 733 Query: 721 gtccgttgatacatgggtggctgcggaaggggtggactcagtagctgaagcggaatgtgt 780 ||| |||| | |||| ||||| ||||||| ||||| || ||||| ||||| |||||||| Sbjct: 734 gtctattgacaaatggttggcttcggaaggagtggattcggtagcagaagctgaatgtgt 793 Query: 781 tgtcctagaaagccttagcagccatgtccgtaccgtggtagcgactctgggtggcaagca 840 ||| || |||||||||||||||||||| ||||| || ||||| |||||||| || ||||| Sbjct: 794 tgtgctggaaagccttagcagccatgttcgtacagtcgtagcaactctggggggaaagca 853 Query: 841 aggagcggcgagcaggttcgacaaatggcagtaccttcattctggattcacggtgtggtt 900 |||||| || ||||| || || ||||||||||| |||||| ||||||| ||||| ||||| Sbjct: 854 aggagcagctagcagatttgataaatggcagtatcttcatgctggatttacggtttggtt 913 Query: 901 gtcggtgtccgaggccggtgatgaagcctctgccaaagaggaggccaggagaagcgttag 960 |||||| ||||| ||| | |||||||| ||||||||||| |||||| | ||||| || || Sbjct: 914 gtcggtctccgatgccagcgatgaagcttctgccaaagaagaggcccgtagaagtgtgag 973 Query: 961 cactgggagcgtggcctatgcgaaggcggatgtggtggtgaagctgggtggatgggaccc 1020 | | || | || || || ||||| || ||||| || |||||||| ||||||||||| || Sbjct: 974 ctcgggaaatgttgcgtacgcgaaagctgatgtagtagtgaagcttggtggatgggatcc 1033 Query: 1021 ggagtacacgcaagctgtggcacagggctgccttgttgccttgaagcagctcaccttggc 1080 ||||||||| | |||||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1034 ggagtacacacgagctgttgcccagggttgccttgtggccttgaagcagctaacattggc 1093 Query: 1081 agataagaagctagcagggaagaagagcctttacatcaggctaggctgtcgaggggactg 1140 ||| |||||||||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct: 1094 agacaagaagctagcaggtaagaagagcctatacatgaggctgggatgccgaggggattg 1153 Query: 1141 gcccaacatcgagccacccggctgggatcct 1171 ||||||||||||||| ||||||||||||||| Sbjct: 1154 gcccaacatcgagcctcccggctgggatcct 1184
>dbj|AK061718.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H11, full insert sequence Length = 1457 Score = 672 bits (339), Expect = 0.0 Identities = 738/871 (84%) Strand = Plus / Plus Query: 301 cggagaggtggagctgaggctggacataggaaagcttggcatcgagagttcaagagatgt 360 |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 331 cggagaggtggagctgaggctggacataggaaagctcggcattgagaattcaagagatgt 390 Query: 361 ttttgttgacgtcgatgacacgtccctgctcatcagagccaagtctgacggaacactgag 420 ||||||||||||||||| ||||| ||| | ||||||||||||| || || |||||| | Sbjct: 391 atttgttgacgtcgatgatacgtctctgttggtcagagccaagtcggatgggacactgcg 450 Query: 421 gactttgatgaatgtcgggacgctattcgacagggttaagtcttctgagacgatatggtt 480 ||||||||| ||||| || || || ||| |||||||||||||||| |||||||| Sbjct: 451 gactttgatcaatgttaaacaactctttgataggattaagtcttctgagactatatggtt 510 Query: 481 cattgatgaggatcagctggtggtgaacctgaagaaagtcgagcaggaattgaaatggcc 540 ||||||||||||||| |||| ||||| || |||||||| ||||| || |||||||||| Sbjct: 511 cattgatgaggatcaattggtagtgaatctaaagaaagttgagcaagagctgaaatggcc 570 Query: 541 cgacattgatgaatcatggaaatccctcactgctgggatcacacagttattgacagggat 600 ||||||||||||||| ||| ||||||| ||| |||| ||||| ||| | ||||||||||| Sbjct: 571 cgacattgatgaatcttgggaatcccttacttctggaatcactcagcttttgacagggat 630 Query: 601 cagcattcacatagttggagattccacggatatcaacgaggcggtcgctaaagagattgc 660 || |||| || ||||| |||||||| ||||| |||||||| || |||||||| || || Sbjct: 631 tagtgttcatattgttggtgattccacagatataaacgaggcagttgctaaagaaatagc 690 Query: 661 tgagggcatcgggtatcttccagtttgcaccagtgagctgctagagagtgccactcaaaa 720 |||||| || || || |||||||| ||||| |||||||||||||| |||||||| |||| Sbjct: 691 tgagggaattggttaccttccagtctgcacaagtgagctgctagaaagtgccaccgaaaa 750 Query: 721 gtccgttgatacatgggtggctgcggaaggggtggactcagtagctgaagcggaatgtgt 780 ||| |||| | |||| ||||| ||||||| ||||| || ||||| ||||| |||||||| Sbjct: 751 gtctattgacaaatggttggcttcggaaggagtggattcggtagcagaagctgaatgtgt 810 Query: 781 tgtcctagaaagccttagcagccatgtccgtaccgtggtagcgactctgggtggcaagca 840 ||| || |||||||||||||||||||| ||||| || ||||| |||||||| || ||||| Sbjct: 811 tgtgctggaaagccttagcagccatgttcgtacagtcgtagcaactctggggggaaagca 870 Query: 841 aggagcggcgagcaggttcgacaaatggcagtaccttcattctggattcacggtgtggtt 900 |||||| || ||||| || || ||||||||||| |||||| ||||||| ||||| ||||| Sbjct: 871 aggagcagctagcagatttgataaatggcagtatcttcatgctggatttacggtttggtt 930 Query: 901 gtcggtgtccgaggccggtgatgaagcctctgccaaagaggaggccaggagaagcgttag 960 |||||| ||||| ||| | |||||||| ||||||||||| |||||| | ||||| || || Sbjct: 931 gtcggtctccgatgccagcgatgaagcttctgccaaagaagaggcccgtagaagtgtgag 990 Query: 961 cactgggagcgtggcctatgcgaaggcggatgtggtggtgaagctgggtggatgggaccc 1020 | | || | || || || ||||| || ||||| || |||||||| ||||||||||| || Sbjct: 991 ctcgggaaatgttgcgtacgcgaaagctgatgtagtagtgaagcttggtggatgggatcc 1050 Query: 1021 ggagtacacgcaagctgtggcacagggctgccttgttgccttgaagcagctcaccttggc 1080 ||||||||| | |||||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct: 1051 ggagtacacacgagctgttgcccagggttgccttgtggccttgaagcagctaacattggc 1110 Query: 1081 agataagaagctagcagggaagaagagcctttacatcaggctaggctgtcgaggggactg 1140 ||| |||||||||||||| ||||||||||| ||||| ||||| || || |||||||| || Sbjct: 1111 agacaagaagctagcaggtaagaagagcctatacatgaggctgggatgccgaggggattg 1170 Query: 1141 gcccaacatcgagccacccggctgggatcct 1171 ||||||||||||||| ||||||||||||||| Sbjct: 1171 gcccaacatcgagcctcccggctgggatcct 1201
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 301 cggagaggtggagctgaggctggacataggaaagcttggcatcgagagttcaagagatgt 360 |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 28335 cggagaggtggagctgaggctggacataggaaagctcggcattgagaattcaagagatgt 28394 Query: 361 ttttgttgacgtcgatgacacgtccctgctcatcagagccaagtctgacggaacactgag 420 ||||||||||||||||| ||||| ||| | ||||||||||||| || || |||||| | Sbjct: 28395 atttgttgacgtcgatgatacgtctctgttggtcagagccaagtcggatgggacactgcg 28454 Query: 421 gactttgatgaatgt 435 ||||||||| ||||| Sbjct: 28455 gactttgatcaatgt 28469 Score = 151 bits (76), Expect = 8e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 477 ggttcattgatgaggatcagctggtggtgaacctgaagaaagtcgagcaggaattgaaat 536 ||||||||||||||||||| |||| ||||| || |||||||| ||||| || |||||| Sbjct: 28587 ggttcattgatgaggatcaattggtagtgaatctaaagaaagttgagcaagagctgaaat 28646 Query: 537 ggcccgacattgatgaatcatggaaatccctcactgctgggatcacacagttattgacag 596 ||||||||||||||||||| ||| ||||||| ||| |||| ||||| ||| | ||||||| Sbjct: 28647 ggcccgacattgatgaatcttgggaatcccttacttctggaatcactcagcttttgacag 28706 Query: 597 ggatcagcattcacatagttggagattccacggatatcaacgaggcggtcgctaaagaga 656 |||| || |||| || ||||| |||||||| ||||| |||||||| || |||||||| | Sbjct: 28707 ggattagtgttcatattgttggtgattccacagatataaacgaggcagttgctaaagaaa 28766 Query: 657 ttgctgagggcatcgggtat 676 | |||||||| || |||||| Sbjct: 28767 tagctgagggaattgggtat 28786 Score = 125 bits (63), Expect = 4e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 920 gatgaagcctctgccaaagaggaggccaggagaagcgttagcactgggagcgtggcctat 979 |||||||| ||||||||||| |||||| | ||||| || ||| | || | || || || Sbjct: 29640 gatgaagcttctgccaaagaagaggcccgtagaagtgtgagctcgggaaatgttgcgtac 29699 Query: 980 gcgaaggcggatgtggtggtgaagctgggtggatgggacccggagtacacgcaagctgtg 1039 ||||| || ||||| || |||||||| ||||||||||| ||||||||||| | |||||| Sbjct: 29700 gcgaaagctgatgtagtagtgaagcttggtggatgggatccggagtacacacgagctgtt 29759 Query: 1040 gcacagggctgccttgttgccttgaagcagctcaccttggcagataagaagctagcagg 1098 || ||||| |||||||| |||||||||||||| || |||||||| |||||||||||||| Sbjct: 29760 gcccagggttgccttgtggccttgaagcagctaacattggcagacaagaagctagcagg 29818 Score = 101 bits (51), Expect = 6e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 798 gcagccatgtccgtaccgtggtagcgactctgggtggcaagcaaggagcggcgagcaggt 857 |||||||||| ||||| || ||||| |||||||| || ||||||||||| || ||||| | Sbjct: 29375 gcagccatgttcgtacagtcgtagcaactctggggggaaagcaaggagcagctagcagat 29434 Query: 858 tcgacaaatggcagtaccttcattctggattcacggtgtggttgtcggtgtccga 912 | || ||||||||||| |||||| ||||||| ||||| ||||||||||| ||||| Sbjct: 29435 ttgataaatggcagtatcttcatgctggatttacggtttggttgtcggtctccga 29489 Score = 89.7 bits (45), Expect = 2e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 1095 cagggaagaagagcctttacatcaggctaggctgtcgaggggactggcccaacatcgagc 1154 |||| ||||||||||| ||||| ||||| || || |||||||| |||||||||||||||| Sbjct: 29972 caggtaagaagagcctatacatgaggctgggatgccgaggggattggcccaacatcgagc 30031 Query: 1155 cacccggctgggatcct 1171 | ||||||||||||||| Sbjct: 30032 ctcccggctgggatcct 30048 Score = 63.9 bits (32), Expect = 1e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 738 tggctgcggaaggggtggactcagtagctgaagcggaatgtgttgtcctagaaagcctta 797 ||||| ||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||| Sbjct: 29231 tggcttcggaaggagtggattcggtagcagaagctgaatgtgttgtgctggaaagcctta 29290 Query: 798 gcag 801 |||| Sbjct: 29291 gcag 29294 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 677 cttccagtttgcaccagtgagctgctagagagtgccactcaaaagtc 723 |||||||| ||||| |||||||||||||| |||||||| ||||||| Sbjct: 29041 cttccagtctgcacaagtgagctgctagaaagtgccaccgaaaagtc 29087
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 157 bits (79), Expect = 1e-34 Identities = 121/135 (89%) Strand = Plus / Plus Query: 301 cggagaggtggagctgaggctggacataggaaagcttggcatcgagagttcaagagatgt 360 |||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| Sbjct: 22512617 cggagaggtggagctgaggctggacataggaaagctcggcattgagaattcaagagatgt 22512676 Query: 361 ttttgttgacgtcgatgacacgtccctgctcatcagagccaagtctgacggaacactgag 420 ||||||||||||||||| ||||| ||| | ||||||||||||| || || |||||| | Sbjct: 22512677 atttgttgacgtcgatgatacgtctctgttggtcagagccaagtcggatgggacactgcg 22512736 Query: 421 gactttgatgaatgt 435 ||||||||| ||||| Sbjct: 22512737 gactttgatcaatgt 22512751 Score = 151 bits (76), Expect = 8e-33 Identities = 169/200 (84%) Strand = Plus / Plus Query: 477 ggttcattgatgaggatcagctggtggtgaacctgaagaaagtcgagcaggaattgaaat 536 ||||||||||||||||||| |||| ||||| || |||||||| ||||| || |||||| Sbjct: 22512869 ggttcattgatgaggatcaattggtagtgaatctaaagaaagttgagcaagagctgaaat 22512928 Query: 537 ggcccgacattgatgaatcatggaaatccctcactgctgggatcacacagttattgacag 596 ||||||||||||||||||| ||| ||||||| ||| |||| ||||| ||| | ||||||| Sbjct: 22512929 ggcccgacattgatgaatcttgggaatcccttacttctggaatcactcagcttttgacag 22512988 Query: 597 ggatcagcattcacatagttggagattccacggatatcaacgaggcggtcgctaaagaga 656 |||| || |||| || ||||| |||||||| ||||| |||||||| || |||||||| | Sbjct: 22512989 ggattagtgttcatattgttggtgattccacagatataaacgaggcagttgctaaagaaa 22513048 Query: 657 ttgctgagggcatcgggtat 676 | |||||||| || |||||| Sbjct: 22513049 tagctgagggaattgggtat 22513068 Score = 125 bits (63), Expect = 4e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 920 gatgaagcctctgccaaagaggaggccaggagaagcgttagcactgggagcgtggcctat 979 |||||||| ||||||||||| |||||| | ||||| || ||| | || | || || || Sbjct: 22513922 gatgaagcttctgccaaagaagaggcccgtagaagtgtgagctcgggaaatgttgcgtac 22513981 Query: 980 gcgaaggcggatgtggtggtgaagctgggtggatgggacccggagtacacgcaagctgtg 1039 ||||| || ||||| || |||||||| ||||||||||| ||||||||||| | |||||| Sbjct: 22513982 gcgaaagctgatgtagtagtgaagcttggtggatgggatccggagtacacacgagctgtt 22514041 Query: 1040 gcacagggctgccttgttgccttgaagcagctcaccttggcagataagaagctagcagg 1098 || ||||| |||||||| |||||||||||||| || |||||||| |||||||||||||| Sbjct: 22514042 gcccagggttgccttgtggccttgaagcagctaacattggcagacaagaagctagcagg 22514100 Score = 101 bits (51), Expect = 6e-18 Identities = 99/115 (86%) Strand = Plus / Plus Query: 798 gcagccatgtccgtaccgtggtagcgactctgggtggcaagcaaggagcggcgagcaggt 857 |||||||||| ||||| || ||||| |||||||| || ||||||||||| || ||||| | Sbjct: 22513657 gcagccatgttcgtacagtcgtagcaactctggggggaaagcaaggagcagctagcagat 22513716 Query: 858 tcgacaaatggcagtaccttcattctggattcacggtgtggttgtcggtgtccga 912 | || ||||||||||| |||||| ||||||| ||||| ||||||||||| ||||| Sbjct: 22513717 ttgataaatggcagtatcttcatgctggatttacggtttggttgtcggtctccga 22513771 Score = 89.7 bits (45), Expect = 2e-14 Identities = 69/77 (89%) Strand = Plus / Plus Query: 1095 cagggaagaagagcctttacatcaggctaggctgtcgaggggactggcccaacatcgagc 1154 |||| ||||||||||| ||||| ||||| || || |||||||| |||||||||||||||| Sbjct: 22514254 caggtaagaagagcctatacatgaggctgggatgccgaggggattggcccaacatcgagc 22514313 Query: 1155 cacccggctgggatcct 1171 | ||||||||||||||| Sbjct: 22514314 ctcccggctgggatcct 22514330 Score = 63.9 bits (32), Expect = 1e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 738 tggctgcggaaggggtggactcagtagctgaagcggaatgtgttgtcctagaaagcctta 797 ||||| ||||||| ||||| || ||||| ||||| ||||||||||| || |||||||||| Sbjct: 22513513 tggcttcggaaggagtggattcggtagcagaagctgaatgtgttgtgctggaaagcctta 22513572 Query: 798 gcag 801 |||| Sbjct: 22513573 gcag 22513576 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 677 cttccagtttgcaccagtgagctgctagagagtgccactcaaaagtc 723 |||||||| ||||| |||||||||||||| |||||||| ||||||| Sbjct: 22513323 cttccagtctgcacaagtgagctgctagaaagtgccaccgaaaagtc 22513369
>ref|NM_001067373.1| Oryza sativa (japonica cultivar-group) Os08g0113200 (Os08g0113200) mRNA, complete cds Length = 3204 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccgg 244 ||||||||||||||||||||||| Sbjct: 104 gccgcctccgcctccgcccccgg 82
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccgg 244 ||||||||||||||||||||||| Sbjct: 707414 gccgcctccgcctccgcccccgg 707436 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 24496970 ccgcctccgcctccgcccccg 24496950
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccgg 244 ||||||||||||||||||||||| Sbjct: 6634 gccgcctccgcctccgcccccgg 6656
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccgg 244 ||||||||||||||||||||||| Sbjct: 134792 gccgcctccgcctccgcccccgg 134814
>dbj|AK102710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104J20, full insert sequence Length = 3209 Score = 46.1 bits (23), Expect = 0.33 Identities = 23/23 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccgg 244 ||||||||||||||||||||||| Sbjct: 105 gccgcctccgcctccgcccccgg 83
>emb|CR855196.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence Length = 73831 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 44314 gccgcctccgcctccgcccccg 44293
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 86 gcagccaccacctgctgctcct 107 |||||||||||||||||||||| Sbjct: 3149640 gcagccaccacctgctgctcct 3149619
>ref|NM_001063546.1| Oryza sativa (japonica cultivar-group) Os06g0186600 (Os06g0186600) mRNA, complete cds Length = 3734 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 340 gccgcctccgcctccgcccccg 361
>gb|AY722410.1| Mus musculus Hepcarcin RNA, complete sequence Length = 7003 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 987 cggatgtggtggtgaagctggg 1008 |||||||||||||||||||||| Sbjct: 1475 cggatgtggtggtgaagctggg 1496
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gcagccaccacctgctgctcct 107 |||||||||||||||||||||| Sbjct: 2483200 gcagccaccacctgctgctcct 2483221
>ref|XM_001086268.1| PREDICTED: Macaca mulatta similar to brain adenylate cyclase 1 (LOC697230), mRNA Length = 5037 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Minus Query: 214 gccggcgagccgcctccgcctccgcc 239 |||||||||||||||||||| ||||| Sbjct: 50 gccggcgagccgcctccgccgccgcc 25
>gb|AC142098.2| Mus musculus BAC clone RP24-458F14 from chromosome 19, complete sequence Length = 193811 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 987 cggatgtggtggtgaagctggg 1008 |||||||||||||||||||||| Sbjct: 86486 cggatgtggtggtgaagctggg 86465
>ref|XM_848418.1| PREDICTED: Canis familiaris similar to Transmembrane 7 superfamily member 1 (LOC612969), mRNA Length = 1671 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccgg 244 |||||||||||||||||||||| Sbjct: 470 ccgcctccgcctccgcccccgg 449
>gb|AC091776.19| Chlamydomonas reinhardtii clone cr-4i21, complete sequence Length = 48498 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 11707 gccgcctccgcctccgcccccg 11728
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 159221 gccgcctccgcctccgcccccg 159242
>gb|BC004722.1| Mus musculus metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA), mRNA (cDNA clone IMAGE:3582796) Length = 1602 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 987 cggatgtggtggtgaagctggg 1008 |||||||||||||||||||||| Sbjct: 777 cggatgtggtggtgaagctggg 798
>gb|BC094333.1| Mus musculus metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA), mRNA (cDNA clone IMAGE:6819026) Length = 1277 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 987 cggatgtggtggtgaagctggg 1008 |||||||||||||||||||||| Sbjct: 571 cggatgtggtggtgaagctggg 592
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 4386861 gccgcctccgcctccgcccccg 4386840 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 12168783 ccgcctccgcctccgcccccg 12168763 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 20979329 ccgcctccgcctccgcccccg 20979309 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 23954928 gccgcctccgcctccgccccc 23954908
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 24748338 gccgcctccgcctccgcccccg 24748317
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0470C02 Length = 158849 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 34542 gccgcctccgcctccgcccccg 34521
>dbj|AK099819.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100I11, full insert sequence Length = 3733 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 341 gccgcctccgcctccgcccccg 362
>gb|AF002222.1|AF002222 Pseudomonas aeruginosa pyoverdine chromophore biosynthesis gene cluster including PvcA (pvcA), PvcB (pvcB), PvcC (pvcC), and PvcD (pvcD) genes, complete cds, and transcriptional activator PtxR (ptxR) gene, complete cds Length = 6397 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 86 gcagccaccacctgctgctcct 107 |||||||||||||||||||||| Sbjct: 2096 gcagccaccacctgctgctcct 2117
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgcccccg 243 |||||||||||||||||||||| Sbjct: 10054 gccgcctccgcctccgcccccg 10033
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome Length = 4008000 Score = 42.1 bits (21), Expect = 5.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 740 gctgcggaaggggtggactcagtagctga 768 ||||||||||||| |||||||||||||| Sbjct: 527287 gctgcggaagggggagactcagtagctga 527259
>emb|CT834666.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA016F12, full insert sequence Length = 1128 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 62 ccgcctccgcctccgcccccg 82
>dbj|AK243674.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100090C24, full insert sequence Length = 2637 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 1145 agccgcctccgcctccgcctccgga 1169
>dbj|AK243636.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100087I01, full insert sequence Length = 818 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 398 agccgcctccgcctccgcctccgga 374
>dbj|AK243156.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100033G07, full insert sequence Length = 3401 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 397 agccgcctccgcctccgcctccgga 373
>dbj|AK243152.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100032N02, full insert sequence Length = 3536 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 2113 agccgcctccgcctccgcctccgga 2137
>dbj|AK243042.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100008L08, full insert sequence Length = 4890 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 1973 agccgcctccgcctccgcctccgga 1997
>ref|NM_001073876.1| Oryza sativa (japonica cultivar-group) Os12g0632000 (Os12g0632000) mRNA, complete cds Length = 780 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 373 agccgcctccgcctccgcctccgga 349
>ref|NM_001069741.1| Oryza sativa (japonica cultivar-group) Os09g0422000 (Os09g0422000) mRNA, complete cds Length = 1706 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 251 ccgcctccgcctccgcccccg 231
>ref|NM_001068670.1| Oryza sativa (japonica cultivar-group) Os08g0496400 (Os08g0496400) mRNA, complete cds Length = 1448 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 263 ccgcctccgcctccgcccccg 243
>ref|NM_001064037.1| Oryza sativa (japonica cultivar-group) Os06g0318300 (Os06g0318300) mRNA, complete cds Length = 1207 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 56 ccgcctccgcctccgcccccg 76
>ref|NM_001058059.1| Oryza sativa (japonica cultivar-group) Os03g0792500 (Os03g0792500) mRNA, complete cds Length = 1647 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 104 gccgcctccgcctccgccccc 84
>ref|NM_001053223.1| Oryza sativa (japonica cultivar-group) Os02g0321600 (Os02g0321600) mRNA, complete cds Length = 800 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccc 241 ||||||||||||||||||||| Sbjct: 339 agccgcctccgcctccgcccc 319
>ref|XM_001211898.1| Aspergillus terreus NIH2624 predicted protein (ATEG_02720) mRNA, complete cds Length = 1329 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 564 gccgcctccgcctccgccccc 544
>gb|AC188170.3| Pan troglodytes BAC clone CH251-584H12 from chromosome 7, complete sequence Length = 220934 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 19746 ccgcctccgcctccgcccccg 19766
>ref|XR_020597.1| PREDICTED: Pan troglodytes similar to Chromosome 9 open reading frame 140 (LOC741726), mRNA Length = 1817 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 775 ccgcctccgcctccgcccccg 795
>ref|XR_018633.1| PREDICTED: Homo sapiens similar to CG3880-PA (LOC442320), mRNA Length = 1385 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 346 ccgcctccgcctccgcccccg 366
>ref|XR_016690.1| PREDICTED: Homo sapiens similar to CG3880-PA (LOC442320), mRNA Length = 1385 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 346 ccgcctccgcctccgcccccg 366
>gb|CP000431.1| Rhodococcus sp. RHA1, complete genome Length = 7804765 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 980 gcgaaggcggatgtggtggtgaagc 1004 ||||||||||| ||||||||||||| Sbjct: 5577927 gcgaaggcggacgtggtggtgaagc 5577951
>gb|DQ397572.1| Cenarchaeum symbiosum clone C09A12, complete sequence Length = 43887 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 28030 gccgcctccgcctccgccccc 28010
>gb|AC168269.3| Mus musculus BAC clone RP23-193M17 from chromosome 17, complete sequence Length = 223337 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 115093 ccgcctccgcctccgcccccg 115113
>gb|AC166102.2| Mus musculus BAC clone RP23-397O23 from chromosome 17, complete sequence Length = 204842 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 144101 ccgcctccgcctccgcccccg 144121
>ref|NM_001031098.1| Gallus gallus proopiomelanocortin (adrenocorticotropin/ beta-lipotropin/ alpha-melanocyte stimulating hormone/ beta-melanocyte stimulating hormone/ beta-endorphin) (POMC), mRNA Length = 756 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 591 ctcctcgccttcctcttcctc 571
>gb|BT017350.1| Zea mays clone EL01N0323G09.c mRNA sequence Length = 1164 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1052 cttgttgccttgaagcagctc 1072 ||||||||||||||||||||| Sbjct: 874 cttgttgccttgaagcagctc 854
>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12, complete sequence Length = 187523 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 69324 ctcctcgccttcctcttcctc 69304
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 89770 gccgcctccgcctccgccccc 89790
>gb|AF235103.5| Homo sapiens chromosome 8 multiple clones map q24.3, complete sequence Length = 345524 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 90 ccaccacctgctgctcctccc 110 ||||||||||||||||||||| Sbjct: 93192 ccaccacctgctgctcctccc 93212
>gb|AC164155.2| Mus musculus BAC clone RP24-548I6 from chromosome 14, complete sequence Length = 215419 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 tccctcactgctgggatcaca 583 ||||||||||||||||||||| Sbjct: 169922 tccctcactgctgggatcaca 169902
>gb|AY230325.1| Triticum aestivum clone 3W2c-A9 FCA protein (Fca) mRNA, partial cds Length = 2183 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 151 ccgcctccgcctccgcccccg 131
>gb|AC126250.4| Mus musculus BAC clone RP23-452K12 from chromosome 14, complete sequence Length = 194924 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 tccctcactgctgggatcaca 583 ||||||||||||||||||||| Sbjct: 76718 tccctcactgctgggatcaca 76698
>gb|AC132474.3| Mus musculus BAC clone RP23-114G13 from chromosome 9, complete sequence Length = 220976 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 121907 ccgcctccgcctccgcccccg 121927
>gb|AC095025.2| Sus scrofa clone RP44-93L12, complete sequence Length = 176757 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 160 tcgccttcctcttcctcggcc 180 ||||||||||||||||||||| Sbjct: 123499 tcgccttcctcttcctcggcc 123519
>gb|AC091685.4| Homo sapiens BAC clone RP11-165H4 from 7, complete sequence Length = 68299 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 65043 ccgcctccgcctccgcccccg 65063
>gb|AC164702.2| Mus musculus BAC clone RP23-402H19 from chromosome 10, complete sequence Length = 208221 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 106490 ccgcctccgcctccgcccccg 106470
>gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's Hospital Oakland Research Institute) complete sequence Length = 234684 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 130552 ccgcctccgcctccgcccccg 130572
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 27096878 agccgcctccgcctccgcctccgga 27096854
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 15201424 ccgcctccgcctccgcccccg 15201444
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 4974739 ctcctcgccttcctcttcctc 4974719
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccc 241 ||||||||||||||||||||| Sbjct: 12851445 agccgcctccgcctccgcccc 12851425
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 32744647 gccgcctccgcctccgccccc 32744627
>gb|AC098567.4| Genomic sequence for Mus musculus, clone RP23-198E6, from chromosome 17, complete sequence Length = 185277 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 113185 ccgcctccgcctccgcccccg 113165
>emb|AL160278.24| Human DNA sequence from clone RP11-574G7 on chromosome 9 Contains the 5' end of the GNAQ gene for guanine nucleotide binding protein (G protein) q polypeptide and a CpG island, complete sequence Length = 215399 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 167886 ccgcctccgcctccgcccccg 167906
>emb|AL109754.13|HSDJ839B4 Human DNA sequence from clone RP5-839B4 on chromosome 20 Contains the 3' end of a novel gene, part of a novel gene, the ANKRD5 gene for ankyrin repeat domain 5 and a CpG island, complete sequence Length = 165010 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 57309 ccgcctccgcctccgcccccg 57289
>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus section 2 of 4 of the complete region Length = 400099 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tccctcactgctgggatcaca 583 ||||||||||||||||||||| Sbjct: 57901 tccctcactgctgggatcaca 57921
>gb|AC153372.5| Mus musculus 6 BAC RP23-358G19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 230623 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 77602 ccgcctccgcctccgcccccg 77622
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 5922339 ccgcctccgcctccgcccccg 5922359
>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12 Length = 348171 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 tcctcggccagcttggcgccg 192 ||||||||||||||||||||| Sbjct: 93406 tcctcggccagcttggcgccg 93426
>gb|AF004592.2|AF004592 Leishmania donovani chagasi amastigote-specific cysteine protease (ldccys1) mRNA, complete cds Length = 2498 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 tcgccttcctcttcctcggcc 180 ||||||||||||||||||||| Sbjct: 1832 tcgccttcctcttcctcggcc 1812
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1292 tgcaaaacattcaacatccat 1312 ||||||||||||||||||||| Sbjct: 263788 tgcaaaacattcaacatccat 263808
>emb|AJ420286.1|LIN420286 Leishmania infantum cpb gene for cysteine proteinase Length = 2767 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 tcgccttcctcttcctcggcc 180 ||||||||||||||||||||| Sbjct: 1840 tcgccttcctcttcctcggcc 1820
>emb|AJ002893.1|OSAJ2893 Oryza sativa mRNA for glycine-rich RNA-binding protein (OsGRP1) Length = 780 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 379 agccgcctccgcctccgcctccgga 355
>gb|AF204951.2|AF204951 Ectocarpus siliculosus virus, complete genome Length = 335593 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 173797 ccgcctccgcctccgcccccg 173777
>gb|AC068491.4| Homo sapiens BAC clone RP11-803D5 from 2, complete sequence Length = 176551 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 ctcactgctgggatcacacag 586 ||||||||||||||||||||| Sbjct: 148323 ctcactgctgggatcacacag 148303
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 780051 ctcctcgccttcctcttcctc 780031
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0592B08 Length = 131096 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 5805 ccgcctccgcctccgcccccg 5785
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0468A12 Length = 143018 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 111572 ccgcctccgcctccgcccccg 111552
>dbj|AP004739.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0090E14 Length = 161119 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 106253 ccgcctccgcctccgcccccg 106233
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 84539 gccgcctccgcctccgccccc 84519
>dbj|AP000364.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0026F07 Length = 137354 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 5230 ccgcctccgcctccgcccccg 5210
>dbj|AP005579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1740_D06 Length = 187410 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 95400 ccgcctccgcctccgcccccg 95420
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccc 241 ||||||||||||||||||||| Sbjct: 70927 agccgcctccgcctccgcccc 70907
>dbj|AP005148.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1142B04 Length = 161964 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 112686 ccgcctccgcctccgcccccg 112666
>dbj|AK110964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B04, full insert sequence Length = 1448 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 263 ccgcctccgcctccgcccccg 243
>dbj|AK108146.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-F04, full insert sequence Length = 801 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccc 241 ||||||||||||||||||||| Sbjct: 340 agccgcctccgcctccgcccc 320
>gb|AC093616.5| Homo sapiens BAC clone RP13-511M20 from 2, complete sequence Length = 192494 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 566 ctcactgctgggatcacacag 586 ||||||||||||||||||||| Sbjct: 8717 ctcactgctgggatcacacag 8697
>dbj|AK101900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071B22, full insert sequence Length = 1707 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 252 ccgcctccgcctccgcccccg 232
>dbj|AK100829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123B19, full insert sequence Length = 1545 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 154 gccgcctccgcctccgccccc 134
>dbj|AK073614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054G13, full insert sequence Length = 1200 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 104 agccgcctccgcctccgcctccgga 80
>dbj|AK068848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164G10, full insert sequence Length = 1650 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 gccgcctccgcctccgccccc 242 ||||||||||||||||||||| Sbjct: 105 gccgcctccgcctccgccccc 85
>dbj|AK065671.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041C14, full insert sequence Length = 1208 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 57 ccgcctccgcctccgcccccg 77
>dbj|AK060873.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-H12, full insert sequence Length = 1321 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 98 ccgcctccgcctccgcccccg 118
>dbj|AK058559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-D08, full insert sequence Length = 1706 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 251 ccgcctccgcctccgcccccg 231
>gb|AY105338.1| Zea mays PCO102700 mRNA sequence Length = 1951 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 223 ccgcctccgcctccgcccccg 243 ||||||||||||||||||||| Sbjct: 121 ccgcctccgcctccgcccccg 141
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 924 aagcctctgccaaagaggagg 944 ||||||||||||||||||||| Sbjct: 380881 aagcctctgccaaagaggagg 380861
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 451130 ctcctcgccttcctcttcctc 451110
>emb|AL713905.6|CNS07YQ5 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131300 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 59359 agccgcctccgcctccgcctccgga 59383
>emb|AL731887.5|CNS08C8R Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145816 Score = 42.1 bits (21), Expect = 5.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 221 agccgcctccgcctccgcccccgga 245 ||||||||||||||||||| ||||| Sbjct: 35773 agccgcctccgcctccgcctccgga 35749
>gb|AC004101.1|AC004101 Mouse Cosmid ma53a016 from 14D1-D2, complete sequence Length = 39491 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tccctcactgctgggatcaca 583 ||||||||||||||||||||| Sbjct: 3964 tccctcactgctgggatcaca 3984
>dbj|AB019555.1| Gallus gallus gene for pro-opiomelanocortin, complete cds Length = 5292 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctcctcgccttcctcttcctc 176 ||||||||||||||||||||| Sbjct: 3645 ctcctcgccttcctcttcctc 3625
>dbj|AB061821.1| Homo sapiens RPL8 gene for ribosomal protein L8, complete cds and sequence Length = 4505 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ccaccacctgctgctcctccc 110 ||||||||||||||||||||| Sbjct: 2981 ccaccacctgctgctcctccc 2961
>gb|L12465.1|CLOFOLSYN Clostridium cylindrosporum formyltetrahydrofolate synthetase gene, complete cds Length = 1894 Score = 42.1 bits (21), Expect = 5.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 ccaccacctgctgctcctccc 110 ||||||||||||||||||||| Sbjct: 489 ccaccacctgctgctcctccc 469 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 210,677,445 Number of extensions: 11215974 Number of successful extensions: 253008 Number of sequences better than 10.0: 109 Number of HSP's gapped: 252992 Number of HSP's successfully gapped: 128 Length of query: 1346 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1323 Effective length of database: 18,503,978,556 Effective search space: 24480763629588 Effective search space used: 24480763629588 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)