ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61e14 |
|---|---|
| Clone Library Name | barley_pub |
>Q01482:WIR1A_WHEAT WIR1A protein - Triticum aestivum (Wheat)| Length = 88 Score = 70.5 bits (171), Expect = 8e-12 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 7/61 (11%) Frame = +2 Query: 170 NSSVCLGAVV-------GSGALNPSRPDFPSPRGASGGPYTGRPCRTIYGCRDGPPAGGK 328 NSSVCLGA G+GAL+P+ P P+P GA G PYTGR CRT+YGCR PPAGG+ Sbjct: 31 NSSVCLGATAVHDAAASGTGALDPNVPAVPTPGGA-GQPYTGRGCRTVYGCR--PPAGGQ 87 Query: 329 P 331 P Sbjct: 88 P 88
>Q01481:WIR1B_WHEAT WIR1B protein - Triticum aestivum (Wheat)| Length = 85 Score = 68.9 bits (167), Expect = 2e-11 Identities = 36/60 (60%), Positives = 43/60 (71%), Gaps = 6/60 (10%) Frame = +2 Query: 170 NSSVCLGAVV------GSGALNPSRPDFPSPRGASGGPYTGRPCRTIYGCRDGPPAGGKP 331 NSSVCLGA V G+GAL+P+ P P+P GA G PYTGR CRT+YGC+ PPAG +P Sbjct: 29 NSSVCLGAAVHDAATSGTGALDPNVPAVPTPGGA-GQPYTGRGCRTVYGCK--PPAGSQP 85
>P05142:PRP2_MOUSE Proline-rich protein MP-2 precursor - Mus musculus (Mouse)| Length = 261 Score = 33.9 bits (76), Expect = 0.83 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Frame = -2 Query: 333 QGLPPAGGPSRHP*IVRHGRPVYG-----PPEAPRGDGKSGRLGLRAPEPTTAPRQT 178 QG PP GGP + P G P G PP+ P G + P PT P+QT Sbjct: 189 QGPPPTGGPQQRP---PQGPPPPGGPQPRPPQGPPPPGGPQPSPTQGPPPTGGPQQT 242
>Q641Z8:PEF1_RAT Peflin - Rattus norvegicus (Rat)| Length = 283 Score = 32.3 bits (72), Expect = 2.4 Identities = 23/53 (43%), Positives = 24/53 (45%), Gaps = 5/53 (9%) Frame = +2 Query: 200 GSGALNPSRP-DFPS----PRGASGGPYTGRPCRTIYGCRDGPPAGGKP*LHP 343 G GA P P +PS P G GGPY G P YG GPP G HP Sbjct: 44 GYGAPAPGGPYGYPSAGGTPSGTPGGPYGGGPPGGPYG--GGPPGGPYGQAHP 94
>P03877:SCE3_YEAST Intron-encoded DNA endonuclease aI3 precursor - Saccharomyces| cerevisiae (Baker's yeast) Length = 403 Score = 32.0 bits (71), Expect = 3.2 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = -1 Query: 739 DGIITV--CKVMRDSKVRPCLVSIS*VTYKLDDLKPVTYKSRLFGCHLTYK 593 DG ITV M+ SK RP +V V +KL+DL+ Y L C YK Sbjct: 108 DGTITVQNSSSMKKSKYRPLIV----VVFKLEDLELANYLCNLTKCGKVYK 154
>P10165:PRPG2_RAT Proline-rich proteoglycan 2 precursor - Rattus norvegicus (Rat)| Length = 295 Score = 31.6 bits (70), Expect = 4.1 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -2 Query: 342 GCNQGLPPAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPRQ 181 G QG PP GGP + P G P G P+ P G + P P P+Q Sbjct: 113 GSPQGPPPPGGPQQRP---PQGPPPQGGPQRPPQPGSP-----QGPPPPGGPQQ 158 Score = 31.6 bits (70), Expect = 4.1 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -2 Query: 342 GCNQGLPPAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPRQ 181 G QG PP GGP + P G P G P+ P G + P P P+Q Sbjct: 145 GSPQGPPPPGGPQQRP---PQGPPPQGGPQRPPQPGSP-----QGPPPPGGPQQ 190 Score = 31.6 bits (70), Expect = 4.1 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = -2 Query: 342 GCNQGLPPAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPRQ 181 G QG PP GGP + P G P G P+ P G + P P P+Q Sbjct: 209 GSPQGPPPPGGPQQRP---PQGPPPQGGPQRPPQPGSP-----QGPPPPGGPQQ 254
>P10164:PRP2_RAT Acidic proline-rich protein PRP25 precursor - Rattus norvegicus| (Rat) Length = 172 Score = 31.2 bits (69), Expect = 5.4 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%) Frame = -2 Query: 348 AHGCNQGLPPAGGPSRHP*IVRHGRPVYGPPEA-----------PRGDGKSGRLGLRAPE 202 A+G QG PP GGP + P ++ G+P PP+ P+G G + P+ Sbjct: 45 ANGSQQGPPPQGGPQQSP--LQPGKPQDPPPQGSPQQKPPQPGKPQGPPPPGGPQKKPPQ 102 Query: 201 P 199 P Sbjct: 103 P 103
>P05143:PMP3_MOUSE Proline-rich protein MP-3 - Mus musculus (Mouse)| Length = 296 Score = 31.2 bits (69), Expect = 5.4 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = -2 Query: 333 QGLPPAGGPSRHP*IVRHGRPVYG-----PPEAPRGDGKSGRLGLRAPEPTTAPRQT 178 QG PP GGP + P G P G PP+ P + P PT P+QT Sbjct: 224 QGPPPTGGPQQRP---PQGPPPPGGPQPRPPQGPPPPTGPQPRPTQGPHPTGGPQQT 277 Score = 30.8 bits (68), Expect = 7.0 Identities = 21/51 (41%), Positives = 22/51 (43%) Frame = -2 Query: 333 QGLPPAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPRQ 181 QG PP GGP H RP GPP P G G P PT P+Q Sbjct: 197 QGPPPPGGP--------HPRPTQGPP--PTGPQPRPTQG---PPPTGGPQQ 234
>Q6P4Z2:CO2A1_XENTR Collagen alpha-1(II) chain precursor - Xenopus tropicalis (Western| clawed frog) (Silurana tropicalis) Length = 1492 Score = 31.2 bits (69), Expect = 5.4 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 336 NQGLP-PAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPR 184 N GLP PAG P + G P G P AP G++G G R PE PR Sbjct: 351 NDGLPGPAGPPGP---VGPAGAP--GFPGAPGSKGEAGPTGARGPEGAQGPR 397
>Q91717:CO2A1_XENLA Collagen alpha-1(II) chain precursor - Xenopus laevis (African| clawed frog) Length = 1486 Score = 31.2 bits (69), Expect = 5.4 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 336 NQGLP-PAGGPSRHP*IVRHGRPVYGPPEAPRGDGKSGRLGLRAPEPTTAPR 184 N GLP PAG P + G P G P AP G++G G R PE PR Sbjct: 348 NDGLPGPAGPPGP---VGPAGAP--GFPGAPGSKGEAGPTGARGPEGAQGPR 394
>P04294:EXON_HHV11 Alkaline exonuclease - Human herpesvirus 1 (strain 17) (HHV-1)| (Human herpes simplex virus 1) Length = 626 Score = 30.8 bits (68), Expect = 7.0 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 5/66 (7%) Frame = +3 Query: 255 PVDHTPAG--RAAQFTDVVMDHPQVANPDYTRAHGPTYVTGKWRPSCTHASRPTFE---H 419 P H+P R TD + P+ A+P + A GP P THA P + Sbjct: 63 PSSHSPVNPPRDQHATDTADEKPRAASPALSDASGPPTPDIPLSPGGTHARDPDADPDSP 122 Query: 420 KLDSVW 437 LDS+W Sbjct: 123 DLDSMW 128
>O31861:YOJB_BACSU Uncharacterized protein yojB - Bacillus subtilis| Length = 78 Score = 30.8 bits (68), Expect = 7.0 Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Frame = +2 Query: 185 LGAVVGSGALNPSRPDF--PSPRGASGGPYTGRPCRTIYGCRDGPPAGGKP 331 LG +GS N SRP P P G GGP YG G P GG P Sbjct: 34 LGGFLGSALFNYSRPYAYPPGPYGYGGGP---------YGFGAGVPYGGYP 75
>Q7SFN5:PALI_NEUCR pH-response regulator protein palI/rim-9 - Neurospora crassa| Length = 705 Score = 30.8 bits (68), Expect = 7.0 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 16/60 (26%) Frame = -2 Query: 330 GLPPAG--------GPSRHP*IVRHGRPVYGPP--------EAPRGDGKSGRLGLRAPEP 199 G+PP G GP R ++GR YGPP PRG G G G R P P Sbjct: 328 GMPPGGYRGRGGFPGPGRGGGPPQNGRGGYGPPGRGRGGYGPPPRGYGGPGPRGGRGPPP 387
>Q28640:HRG_RABIT Histidine-rich glycoprotein precursor - Oryctolagus cuniculus| (Rabbit) Length = 526 Score = 30.8 bits (68), Expect = 7.0 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -2 Query: 351 HAHGCN-QGLPPAGGPSRHP*IVRHGRPVYG-PPEAPRGDG 235 H HG G PP G P RHP HG P +G PP P G Sbjct: 344 HPHGPPPHGHPPHGPPPRHP---PHGPPPHGHPPHGPPPHG 381
>P25439:BRM_DROME Homeotic gene regulator - Drosophila melanogaster (Fruit fly)| Length = 1638 Score = 30.8 bits (68), Expect = 7.0 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = -2 Query: 333 QGLPPAGGPSRHP*IVRHGRPVYGPP---EAPRGDG----KSGRLGLRAPE--PTTAPRQ 181 QG PP G P + ++HG P GPP P G K +G++ P P +P Q Sbjct: 44 QGPPPPGHPGAYGHPMQHGPPGQGPPGHHMPPHHQGMIFSKGPHMGMQMPPTGPNMSPYQ 103 Query: 180 T 178 T Sbjct: 104 T 104
>P10163:PRB4S_HUMAN Basic salivary proline-rich protein 4 allele S precursor - Homo| sapiens (Human) Length = 247 Score = 30.4 bits (67), Expect = 9.2 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -2 Query: 342 GCNQGLPPAGGPSRHP*IVRHGRPVYGPPEAPRG 241 G QG PPAGG + P G+P GPP P+G Sbjct: 201 GKPQGPPPAGGNPQQPQAPPAGKP-QGPPPPPQG 233 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 148,038,457 Number of extensions: 3352095 Number of successful extensions: 7963 Number of sequences better than 10.0: 16 Number of HSP's gapped: 7916 Number of HSP's successfully gapped: 19 Length of query: 281 Length of database: 100,686,439 Length adjustment: 112 Effective length of query: 169 Effective length of database: 69,965,399 Effective search space: 11824152431 Effective search space used: 11824152431 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
