ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf68p20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK103617:Os10g0548200 29 3.0
2AK067082:Os07g0662900 29 3.0
3AK066542:Os10g0548200 29 3.0
4AK062557:Os10g0548200 29 3.0
5Os11g0236200:Os11g0236200 29 3.9
6AK068163:Os02g0817900 28 6.7

>AK103617:Os10g0548200 |
          Length = 1196
 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 179  QIGDFCSTRGTPHP-HIILERCSEWTDS---KWSGFFFFACAVGSI 54
            Q+   CS  GTP    I L  C E   S   KW   F+ ACA  S+
Sbjct: 992  QLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYLACAQCSV 1037



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>AK067082:Os07g0662900 |
          Length = 946

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 570 RHSNLTRTIISTEELPPRWC-PASSSFCLEGHFESP 466
           R S   +T+I +++ PP  C P  ++F ++ HF++P
Sbjct: 818 RRSRFYQTVIGSDDEPPSRCTPEVANFIVKQHFDAP 853



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>AK066542:Os10g0548200 |
          Length = 599

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 179 QIGDFCSTRGTPHP-HIILERCSEWTDS---KWSGFFFFACAVGSI 54
           Q+   CS  GTP    I L  C E   S   KW   F+ ACA  S+
Sbjct: 395 QLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYLACAQCSV 440



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>AK062557:Os10g0548200 |
          Length = 566

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -1

Query: 179 QIGDFCSTRGTPHP-HIILERCSEWTDS---KWSGFFFFACAVGSI 54
           Q+   CS  GTP    I L  C E   S   KW   F+ ACA  S+
Sbjct: 362 QLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYLACAQCSV 407



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>Os11g0236200:Os11g0236200 |
          Length = 221

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +2

Query: 353 PLCRQKCNTVDEGHAIRTKKRLAGLLELTAQCCAGAPQGLSK*PSRQKEEEAGHHLGGSS 532
           P+  +K +  +E H  R K+ LAG+   T QC      G  +  +R  EEEA  H GG S
Sbjct: 158 PVLGRKSSHEEELHRGR-KQELAGMCGKTCQC------GEEEELTRCGEEEARRHWGGGS 210

Query: 533 S 535
           +
Sbjct: 211 A 211



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>AK068163:Os02g0817900 |
          Length = 643

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +3

Query: 399 SARRKGLLDCLNSQHNVAQGPRRGSRSDPLGKKKRK 506
           SARR+ LL C  S  N   G   GS SDP+ +++R+
Sbjct: 48  SARRRLLLRCAASGGNGKGGGGDGSGSDPVLEERRR 83


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 19,936,305
Number of extensions: 431719
Number of successful extensions: 1096
Number of sequences better than 10.0: 6
Number of HSP's gapped: 1096
Number of HSP's successfully gapped: 6
Length of query: 249
Length of database: 15,399,855
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,475,837
Effective search space: 1732851387
Effective search space used: 1732851387
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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