ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf68p13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001055484.1| Oryza sativa (japonica cultivar-group) Os03g0145500 (Os03g0145500) mRNA, complete cds Length = 3419 Score = 321 bits (162), Expect = 3e-84 Identities = 332/389 (85%), Gaps = 6/389 (1%) Strand = Plus / Plus Query: 558 cgcgccacgtgcggaccagcagcttccagcggttccggcagcagatgcagcgcgcgtgga 617 |||| |||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 598 cgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtgga 657 Query: 618 agtggggccccgtcggaggtggaggaggcgccgagaggagccccagggagcagttgctgc 677 | ||||| || | ||| ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 658 aatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgc 717 Query: 678 gcactacggtcaacattgaggctatggcgaaccagaagcggcagtggtatcaaatccacg 737 | || || || ||| |||| ||||||||| | |||||||||||||||||||||||||| Sbjct: 718 gtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatccaat 777 Query: 738 ccaag------gatcagaatcagtttaaggaaccatcatcgctctttgaacattttttcg 791 ||||| || | || |||| |||||||||| || | ||||||||||||||||||| Sbjct: 778 ccaagtcacgggacaataagcagtataaggaaccaacaacactctttgaacattttttcg 837 Query: 792 tagttggactccattcttatgcaaatgttgcagtaattgaggatgcttttgcaaaaaaga 851 |||| ||||| ||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 838 tagtcggacttcattcttatgcaaatgttggagtcattgaggatgcatttgcaaagaaga 897 Query: 852 aagcttgggagtctaatgtggcatgttcagaggttgttgatcttagtaaaattcagtacc 911 |||||||||| |||||||| | | || ||| |||| |||||||| |||||||| || | Sbjct: 898 aagcttgggaatctaatgtagaacactcggagattgtagatcttagaaaaattcaatatc 957 Query: 912 atggaccaataccaaccatggaaccacag 940 ||||||| ||||||||||||||||||||| Sbjct: 958 atggacctataccaaccatggaaccacag 986
>dbj|AK066503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074H13, full insert sequence Length = 3421 Score = 321 bits (162), Expect = 3e-84 Identities = 332/389 (85%), Gaps = 6/389 (1%) Strand = Plus / Plus Query: 558 cgcgccacgtgcggaccagcagcttccagcggttccggcagcagatgcagcgcgcgtgga 617 |||| |||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 600 cgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtgga 659 Query: 618 agtggggccccgtcggaggtggaggaggcgccgagaggagccccagggagcagttgctgc 677 | ||||| || | ||| ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 660 aatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgc 719 Query: 678 gcactacggtcaacattgaggctatggcgaaccagaagcggcagtggtatcaaatccacg 737 | || || || ||| |||| ||||||||| | |||||||||||||||||||||||||| Sbjct: 720 gtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatccaat 779 Query: 738 ccaag------gatcagaatcagtttaaggaaccatcatcgctctttgaacattttttcg 791 ||||| || | || |||| |||||||||| || | ||||||||||||||||||| Sbjct: 780 ccaagtcacgggacaataagcagtataaggaaccaacaacactctttgaacattttttcg 839 Query: 792 tagttggactccattcttatgcaaatgttgcagtaattgaggatgcttttgcaaaaaaga 851 |||| ||||| ||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 840 tagtcggacttcattcttatgcaaatgttggagtcattgaggatgcatttgcaaagaaga 899 Query: 852 aagcttgggagtctaatgtggcatgttcagaggttgttgatcttagtaaaattcagtacc 911 |||||||||| |||||||| | | || ||| |||| |||||||| |||||||| || | Sbjct: 900 aagcttgggaatctaatgtagaacactcggagattgtagatcttagaaaaattcaatatc 959 Query: 912 atggaccaataccaaccatggaaccacag 940 ||||||| ||||||||||||||||||||| Sbjct: 960 atggacctataccaaccatggaaccacag 988
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 198 bits (100), Expect = 3e-47 Identities = 169/192 (88%) Strand = Plus / Minus Query: 752 cagtttaaggaaccatcatcgctctttgaacattttttcgtagttggactccattcttat 811 |||| |||||||||| || | ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 2506309 cagtataaggaaccaacaacactctttgaacattttttcgtagtcggacttcattcttat 2506250 Query: 812 gcaaatgttgcagtaattgaggatgcttttgcaaaaaagaaagcttgggagtctaatgtg 871 |||||||||| ||| ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 2506249 gcaaatgttggagtcattgaggatgcatttgcaaagaagaaagcttgggaatctaatgta 2506190 Query: 872 gcatgttcagaggttgttgatcttagtaaaattcagtaccatggaccaataccaaccatg 931 | | || ||| |||| |||||||| |||||||| || |||||||| |||||||||||| Sbjct: 2506189 gaacactcggagattgtagatcttagaaaaattcaatatcatggacctataccaaccatg 2506130 Query: 932 gaaccacaggtg 943 |||||||||||| Sbjct: 2506129 gaaccacaggtg 2506118 Score = 178 bits (90), Expect = 3e-41 Identities = 156/178 (87%) Strand = Plus / Minus Query: 558 cgcgccacgtgcggaccagcagcttccagcggttccggcagcagatgcagcgcgcgtgga 617 |||| |||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 2507150 cgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtgga 2507091 Query: 618 agtggggccccgtcggaggtggaggaggcgccgagaggagccccagggagcagttgctgc 677 | ||||| || | ||| ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 2507090 aatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgc 2507031 Query: 678 gcactacggtcaacattgaggctatggcgaaccagaagcggcagtggtatcaaatcca 735 | || || || ||| |||| ||||||||| | |||||||||||||||||||||||||| Sbjct: 2507030 gtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatcca 2506973 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 gcaccgtcgtcgtcgccgtcg 232 ||||||||||||||||||||| Sbjct: 12792165 gcaccgtcgtcgtcgccgtcg 12792185 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 216 cgtcgtcgtcgccgtcgatgtcggtgtcg 244 ||||||||||| |||||| |||||||||| Sbjct: 34463327 cgtcgtcgtcgtcgtcgaagtcggtgtcg 34463355
>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09, complete sequence Length = 106057 Score = 198 bits (100), Expect = 3e-47 Identities = 169/192 (88%) Strand = Plus / Minus Query: 752 cagtttaaggaaccatcatcgctctttgaacattttttcgtagttggactccattcttat 811 |||| |||||||||| || | ||||||||||||||||||||||| ||||| ||||||||| Sbjct: 78695 cagtataaggaaccaacaacactctttgaacattttttcgtagtcggacttcattcttat 78636 Query: 812 gcaaatgttgcagtaattgaggatgcttttgcaaaaaagaaagcttgggagtctaatgtg 871 |||||||||| ||| ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 78635 gcaaatgttggagtcattgaggatgcatttgcaaagaagaaagcttgggaatctaatgta 78576 Query: 872 gcatgttcagaggttgttgatcttagtaaaattcagtaccatggaccaataccaaccatg 931 | | || ||| |||| |||||||| |||||||| || |||||||| |||||||||||| Sbjct: 78575 gaacactcggagattgtagatcttagaaaaattcaatatcatggacctataccaaccatg 78516 Query: 932 gaaccacaggtg 943 |||||||||||| Sbjct: 78515 gaaccacaggtg 78504 Score = 178 bits (90), Expect = 3e-41 Identities = 156/178 (87%) Strand = Plus / Minus Query: 558 cgcgccacgtgcggaccagcagcttccagcggttccggcagcagatgcagcgcgcgtgga 617 |||| |||||||| ||| ||||||||||||| |||||||||||||||||||| ||||||| Sbjct: 79536 cgcggcacgtgcgcaccggcagcttccagcgtttccggcagcagatgcagcgggcgtgga 79477 Query: 618 agtggggccccgtcggaggtggaggaggcgccgagaggagccccagggagcagttgctgc 677 | ||||| || | ||| ||||||| |||| |||||||||||||||||||||| |||||| Sbjct: 79476 aatgggggccaattggaagtggaggcggcggcgagaggagccccagggagcagctgctgc 79417 Query: 678 gcactacggtcaacattgaggctatggcgaaccagaagcggcagtggtatcaaatcca 735 | || || || ||| |||| ||||||||| | |||||||||||||||||||||||||| Sbjct: 79416 gtacgacagtgaactttgaagctatggcgcatcagaagcggcagtggtatcaaatcca 79359
>gb|BC060498.1| Xenopus laevis hypothetical protein MGC68816, mRNA (cDNA clone MGC:68816 IMAGE:4633218), complete cds Length = 1624 Score = 48.1 bits (24), Expect = 0.065 Identities = 24/24 (100%) Strand = Plus / Plus Query: 108 ggctggcggaggaggaggtgcggg 131 |||||||||||||||||||||||| Sbjct: 161 ggctggcggaggaggaggtgcggg 184
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 256 cgacgaggcgggggccgcggacgacgaggaggaggc 291 |||||||||||| ||||| | ||||||||||||||| Sbjct: 11100659 cgacgaggcgggcgccgccgccgacgaggaggaggc 11100694
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 256 cgacgaggcgggggccgcggacgacgaggaggaggc 291 |||||||||||| ||||| | ||||||||||||||| Sbjct: 83353 cgacgaggcgggcgccgccgccgacgaggaggaggc 83388
>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1057_D08 Length = 119557 Score = 48.1 bits (24), Expect = 0.065 Identities = 33/36 (91%) Strand = Plus / Plus Query: 256 cgacgaggcgggggccgcggacgacgaggaggaggc 291 |||||||||||| ||||| | ||||||||||||||| Sbjct: 19838 cgacgaggcgggcgccgccgccgacgaggaggaggc 19873
>ref|NM_001066461.1| Oryza sativa (japonica cultivar-group) Os07g0548000 (Os07g0548000) mRNA, complete cds Length = 1050 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 116 ccgtcgtcgtcgccgtcgatgtc 94
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Minus Query: 112 ggcggaggaggaggtgcgggaggcggagctg 142 |||||||||||||||| ||||||||||||| Sbjct: 20853041 ggcggaggaggaggtggcggaggcggagctg 20853011
>ref|NM_141009.2| Drosophila melanogaster CG32432-RA (CG32432), mRNA Length = 4494 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 112 ggcggaggaggaggtgcgggaggcggagctg 142 |||||||||||||||| ||||||||||||| Sbjct: 866 ggcggaggaggaggtggcggaggcggagctg 896
>gb|AC010064.7| Drosophila melanogaster 3L BAC RP98-22I16 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 199396 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Minus Query: 112 ggcggaggaggaggtgcgggaggcggagctg 142 |||||||||||||||| ||||||||||||| Sbjct: 90839 ggcggaggaggaggtggcggaggcggagctg 90809
>gb|AY113343.1| Drosophila melanogaster GH12701 full insert cDNA Length = 4507 Score = 46.1 bits (23), Expect = 0.26 Identities = 29/31 (93%) Strand = Plus / Plus Query: 112 ggcggaggaggaggtgcgggaggcggagctg 142 |||||||||||||||| ||||||||||||| Sbjct: 866 ggcggaggaggaggtggcggaggcggagctg 896
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 21678379 ccgtcgtcgtcgccgtcgatgtc 21678401 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 21689715 ccgtcgtcgtcgccgtcgatgtc 21689737 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 21697402 ccgtcgtcgtcgccgtcgatgtc 21697424
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Minus Query: 139 gctgttcgaggatgcggtggacg 161 ||||||||||||||||||||||| Sbjct: 3219217 gctgttcgaggatgcggtggacg 3219195
>dbj|AP004401.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534A03 Length = 153170 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 6898 ccgtcgtcgtcgccgtcgatgtc 6920 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 14585 ccgtcgtcgtcgccgtcgatgtc 14607
>dbj|AP003960.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1612_A04 Length = 124833 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 108835 ccgtcgtcgtcgccgtcgatgtc 108857 Score = 46.1 bits (23), Expect = 0.26 Identities = 23/23 (100%) Strand = Plus / Plus Query: 215 ccgtcgtcgtcgccgtcgatgtc 237 ||||||||||||||||||||||| Sbjct: 120171 ccgtcgtcgtcgccgtcgatgtc 120193
>ref|XM_001141793.1| PREDICTED: Pan troglodytes suppressor of cytokine signaling 1 (SOCS1), mRNA Length = 1197 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 263 gcgggggccgcggacgacgaggagga 288 ||||||||||||||||| |||||||| Sbjct: 227 gcgggggccgcggacgaggaggagga 202
>gb|CP000390.1| Mesorhizobium sp. BNC1, complete genome Length = 4412446 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 109 gctggcggaggaggaggtgcgggagg 134 |||||||||||||||||||| ||||| Sbjct: 125969 gctggcggaggaggaggtgctggagg 125944
>ref|XM_370484.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06981.4) partial mRNA Length = 2613 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 618 agtggggccccgtcggaggtggaggaggcg 647 |||||| ||||||||| ||||||||||||| Sbjct: 2228 agtgggcccccgtcggcggtggaggaggcg 2199
>gb|AE010384.1| Methanopyrus kandleri AV19 section 83 of 157 of the complete genome Length = 11034 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 114 cggaggaggaggtgcgggaggcggag 139 ||||||||||| |||||||||||||| Sbjct: 1086 cggaggaggagctgcgggaggcggag 1111
>ref|XM_811478.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053511827.130) partial mRNA Length = 10404 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 ggacgacgaggaggaggcgtac 295 |||||||||||||||||||||| Sbjct: 5919 ggacgacgaggaggaggcgtac 5940
>ref|XM_803076.1| Trypanosoma cruzi strain CL Brener tryparedoxin (Tc00.1047053509997.30) partial mRNA Length = 435 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 ggacgacgaggaggaggcgtac 295 |||||||||||||||||||||| Sbjct: 210 ggacgacgaggaggaggcgtac 231
>emb|AJ313314.1|TCR313314 Trypanosoma cruzi TPNI gene for Tryparedoxin Length = 435 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 ggacgacgaggaggaggcgtac 295 |||||||||||||||||||||| Sbjct: 210 ggacgacgaggaggaggcgtac 231
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 207 aggctgcaccgtcgtcgtcgccgtcg 232 ||||||| |||||||||||||||||| Sbjct: 83308 aggctgccccgtcgtcgtcgccgtcg 83333
>emb|CT835238.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011M23, full insert sequence Length = 727 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 gcaccgtcgtcgtcgccgtcg 232 ||||||||||||||||||||| Sbjct: 357 gcaccgtcgtcgtcgccgtcg 377
>emb|CR855230.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence Length = 189580 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 488 tccaggtcctcgtcggcaccgccttcgcc 516 |||| |||||||||||| ||||||||||| Sbjct: 150423 tccacgtcctcgtcggctccgccttcgcc 150395
>ref|XM_001226054.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_10788) mRNA, complete cds Length = 4230 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 cggacgacgaggaggaggcgtacga 297 |||||||||||||||||||| |||| Sbjct: 1028 cggacgacgaggaggaggcggacga 1052
>ref|XR_022586.1| PREDICTED: Pan troglodytes actin binding LIM protein family, member 2 (ABLIM2), mRNA Length = 2544 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 atcgcgagagggcagcgcctc 390 ||||||||||||||||||||| Sbjct: 306 atcgcgagagggcagcgcctc 326
>ref|XM_001127563.1| PREDICTED: Homo sapiens hypothetical protein LOC730873 (LOC730873), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 aggctggcggaggaggaggtg 127 ||||||||||||||||||||| Sbjct: 560 aggctggcggaggaggaggtg 580
>ref|XM_001127528.1| PREDICTED: Homo sapiens hypothetical protein LOC728476 (LOC728476), mRNA Length = 1227 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 aggctggcggaggaggaggtg 127 ||||||||||||||||||||| Sbjct: 560 aggctggcggaggaggaggtg 580
>gb|AC188307.1| Pongo pygmaeus abelii chromosome UNK clone CH276-79H12, complete sequence Length = 205035 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1018 ttatttgtgaaataaaagttt 1038 ||||||||||||||||||||| Sbjct: 70162 ttatttgtgaaataaaagttt 70182
>gb|BT017098.1| Zea mays clone EL01N0361G07.c mRNA sequence Length = 966 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 198 gcgagggcgaggctgcaccgtcgtcgtcg 226 ||||||||||||| ||| ||||||||||| Sbjct: 203 gcgagggcgaggcggcagcgtcgtcgtcg 175
>gb|AY521625.1| Singapore grouper iridovirus, complete genome Length = 140131 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 111 tggcggaggaggaggtgcgggaggcggag 139 ||||||||| ||||| ||||||||||||| Sbjct: 37700 tggcggaggcggaggagcgggaggcggag 37728
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 gcaccgtcgtcgtcgccgtcg 232 ||||||||||||||||||||| Sbjct: 33618 gcaccgtcgtcgtcgccgtcg 33638
>ref|XM_863682.1| PREDICTED: Canis familiaris hypothetical protein LOC612680 (LOC612680), mRNA Length = 1071 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 ctccccggcggccccgccacg 79 ||||||||||||||||||||| Sbjct: 222 ctccccggcggccccgccacg 242
>gb|DQ354110.1| Streptomyces violaceusniger strain DSM 4137 polyether nigericin biosynthetic gene cluster, complete sequence Length = 95700 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 217 gtcgtcgtcgccgtcgatgtcggtgtcga 245 ||||||||||| |||||||||| |||||| Sbjct: 49617 gtcgtcgtcgctgtcgatgtcgctgtcga 49589
>gb|AC010188.29| Homo sapiens 12 BAC RP11-225E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 158591 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 aggctggcggaggaggaggtg 127 ||||||||||||||||||||| Sbjct: 19914 aggctggcggaggaggaggtg 19894
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 tcgtcgtcgccgtcgatgtcg 238 ||||||||||||||||||||| Sbjct: 15882 tcgtcgtcgccgtcgatgtcg 15902
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 488 tccaggtcctcgtcggcaccgccttcgcc 516 |||| |||||||||||| ||||||||||| Sbjct: 26413689 tccacgtcctcgtcggctccgccttcgcc 26413661
>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence Length = 164269 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1018 ttatttgtgaaataaaagttt 1038 ||||||||||||||||||||| Sbjct: 87113 ttatttgtgaaataaaagttt 87133
>gb|AC091247.4| Oryza sativa chromosome 3 BAC OJ1111_B11 genomic sequence, complete sequence Length = 115393 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cgtcgtcgtcgccgtcgatgtcggtgtcg 244 ||||||||||| |||||| |||||||||| Sbjct: 76839 cgtcgtcgtcgtcgtcgaagtcggtgtcg 76811
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 262 ggcgggggccgcggacgacgaggaggagg 290 |||||||| ||||| |||||||||||||| Sbjct: 24438 ggcgggggacgcggtcgacgaggaggagg 24410
>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence Length = 163948 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 atcgcgagagggcagcgcctc 390 ||||||||||||||||||||| Sbjct: 11900 atcgcgagagggcagcgcctc 11880
>gb|AC046135.15| Homo sapiens 12 BAC RP11-295B8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175833 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 aggctggcggaggaggaggtg 127 ||||||||||||||||||||| Sbjct: 147521 aggctggcggaggaggaggtg 147541
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 ctggcggaggaggaggtgcgggagg 134 ||||| ||||||||||||||||||| Sbjct: 586388 ctggccgaggaggaggtgcgggagg 586364
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 133 ggcggagctgttcgaggatgcggtggacg 161 ||||||||| ||||||||||||| ||||| Sbjct: 1505087 ggcggagctcttcgaggatgcggcggacg 1505059
>dbj|AK121566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034N15, full insert sequence Length = 1676 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 216 cgtcgtcgtcgccgtcgatgtcggtgtcg 244 ||||||||||| |||||| |||||||||| Sbjct: 184 cgtcgtcgtcgtcgtcgaagtcggtgtcg 156
>gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromosome unknown, complete sequence Length = 220538 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 ggagcagccggagccgctcag 108 ||||||||||||||||||||| Sbjct: 88904 ggagcagccggagccgctcag 88884
>gb|AF207949.1|AF207949 Trichogramma cacoeciae clone 3Tc cytochrome P450 (CYP4G12) gene, partial cds Length = 456 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 ggctgcaccgtcgtcgtcgcc 228 ||||||||||||||||||||| Sbjct: 328 ggctgcaccgtcgtcgtcgcc 348
>dbj|AP001877.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2564P9, complete sequence Length = 167306 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 820 tgcagtaattgaggatgcttt 840 ||||||||||||||||||||| Sbjct: 77018 tgcagtaattgaggatgcttt 77038
>dbj|AP000627.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-9I16, complete sequence Length = 120240 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 820 tgcagtaattgaggatgcttt 840 ||||||||||||||||||||| Sbjct: 6466 tgcagtaattgaggatgcttt 6486
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cgctcaggctggcggaggagg 122 ||||||||||||||||||||| Sbjct: 4398408 cgctcaggctggcggaggagg 4398388
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 488 tccaggtcctcgtcggcaccgccttcgcc 516 |||| |||||||||||| ||||||||||| Sbjct: 54322 tccacgtcctcgtcggctccgccttcgcc 54294 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 146,395,559 Number of extensions: 9467410 Number of successful extensions: 311394 Number of sequences better than 10.0: 54 Number of HSP's gapped: 311390 Number of HSP's successfully gapped: 64 Length of query: 1064 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1041 Effective length of database: 18,503,978,556 Effective search space: 19262641676796 Effective search space used: 19262641676796 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
