| Clone Name | FLbaf68p05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os12g22010:12012.t01940:unspliced-genomic hypothetical protein| Length = 5665 Score = 33.1 bits (66), Expect = 0.54 Identities = 9/29 (31%), Positives = 21/29 (72%) Frame = +2 / +3 Query: 122 HHNHYRFACLITSVIYLV*IMDYDVYYYC 208 H+NH+ ++CL +Y +*++ +++ +YC Sbjct: 2856 HNNHFCWSCLCLFHLYEI*LIKHNILWYC 2942
>LOC_Os11g05450:12011.t00437:unspliced-genomic hypothetical protein| Length = 429 Score = 32.2 bits (64), Expect = 1.0 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = -3 / -2 Query: 151 QARKAIVVVVEVWDP*LLYSHAGRRQLSSAAHTPRP*LAAYSMVGSVLRW 2 +A + VV V LL GRRQL+ A P P L++ S S RW Sbjct: 260 EADDELAAVVAVTGTALLTELTGRRQLARRASPPPPSLSSASSSSSRRRW 111
>LOC_Os01g48150:12001.t04260:unspliced-genomic expressed protein| Length = 742 Score = 32.2 bits (64), Expect = 1.0 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = -2 / +1 Query: 230 AAIASHCRSSSTHHNP*FRPNKSH 159 +A+A+HC SSS +P F P+K H Sbjct: 310 SALAAHCPSSSPFPSPSFPPSKQH 381
>LOC_Os09g07980:12009.t00594:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class| Length = 4994 Score = 28.1 bits (55), Expect(2) = 1.2 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -2 / -1 Query: 86 RSQAVEFSSPYAKTLTCSLLNGRLCS 9 RS A SSPY L CSLL+ S Sbjct: 218 RSSASTSSSPYPMVLACSLLSSNSSS 141 Score = 24.0 bits (46), Expect(2) = 1.2 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -3 / -1 Query: 274 FFFLLKGPIHYT 239 FFF LKGP H T Sbjct: 4679 FFFHLKGPSHKT 4644
>LOC_Os10g25349:12010.t01956:unspliced-genomic hypothetical protein| Length = 750 Score = 26.3 bits (51), Expect(2) = 1.6 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = +1 / +1 Query: 61 LLNSTACDLRASRVIRDPTLPPQPLSL 141 LL +R IR TLPP PL L Sbjct: 85 LLQLRELGVREDHAIRSATLPPPPLPL 165 Score = 21.7 bits (41), Expect(2) = 1.6 Identities = 8/10 (80%), Positives = 8/10 (80%) Frame = +3 / +1 Query: 198 TTTAAMACYC 227 TTTAA AC C Sbjct: 316 TTTAATACGC 345
>LOC_Os01g52740:12001.t04700:unspliced-genomic expressed protein| Length = 1562 Score = 31.3 bits (62), Expect = 1.9 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -2 / +1 Query: 140 SDSGCGGSVGSLITLLARRSQAVEFSSPYAKTL 42 S SGCGG V LLARR A S +TL Sbjct: 166 SGSGCGGEVVPPHVLLARRRAAFSMCSGQGRTL 264
>LOC_Os07g48180:12007.t04451:unspliced-genomic transcription factor RF2b, putative, expressed| Length = 4053 Score = 24.4 bits (47), Expect(2) = 2.5 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -1 / +1 Query: 282 VFFFFFCLRVQYIILLFS 229 +F+F CLR + I LFS Sbjct: 1408 LFYFVVCLRTKNCITLFS 1461 Score = 23.5 bits (45), Expect(2) = 2.5 Identities = 11/39 (28%), Positives = 19/39 (48%) Frame = -2 / +1 Query: 125 GGSVGSLITLLARRSQAVEFSSPYAKTLTCSLLNGRLCS 9 G VGS + L + + SP+++ L + G +CS Sbjct: 1492 GAVVGSTLLLCFLSMHSSDTLSPFSQGLLYFIPKGHICS 1608
>LOC_Os04g18170:12004.t01563:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 1842 Score = 30.9 bits (61), Expect = 2.6 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +2 / +1 Query: 107 GIPHFHHNHYRFACLITSVIYLV 175 G+ HFH N+Y F+C ++L+ Sbjct: 1180 GVLHFHLNYYSFSCCYMLTVFLL 1248
>LOC_Os03g62300:12003.t05456:unspliced-genomic hypothetical protein| Length = 8052 Score = 30.9 bits (61), Expect = 2.7 Identities = 13/20 (65%), Positives = 15/20 (75%) Frame = -1 / -3 Query: 282 VFFFFFCLRVQYIILLFSRN 223 VFFFFF L VQY I+L R+ Sbjct: 7102 VFFFFFFL*VQYSIVLIQRS 7043
>LOC_Os01g58444:12001.t006874:unspliced-genomic expressed protein| Length = 3811 Score = 30.4 bits (60), Expect = 3.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 / +2 Query: 119 FHHNHYRFACLITSVIYLV*IMDYDVYYYCGNGLLLRLN 235 FHH+ Y F L+ + Y IM ++ Y + LLL L+ Sbjct: 2321 FHHHAYYFYSLLPLLWYSYRIMQKSIFSYFADPLLLPLH 2437
>LOC_Os01g49300:12001.t04369:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4199 Score = 30.4 bits (60), Expect = 3.6 Identities = 10/25 (40%), Positives = 19/25 (76%) Frame = -3 / -3 Query: 124 VEVWDP*LLYSHAGRRQLSSAAHTP 50 V++W+P +YSH +R+L+ A ++P Sbjct: 3627 VQLWEPP*IYSHIPQRKLNLALYSP 3553
>LOC_Os05g30610:12005.t02660:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5719 Score = 30.4 bits (60), Expect = 3.7 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = -1 / -1 Query: 132 WLWWKCGIPDYSTRTQVAGS*VQQPIRQDLNLQLTQW 22 WL W CG+ + S + + S +Q P R+ + + Q+ Sbjct: 2623 WLHWSCGVSNRSPQAKNYFSPLQNPTRKTKQILMIQY 2513
>LOC_Os01g49230:12001.t04362:unspliced-genomic limonoid UDP-glucosyltransferase, putative, expressed| Length = 1570 Score = 29.9 bits (59), Expect = 5.0 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -2 / +3 Query: 212 CRSSSTHHNP*FRPNKSHW*SSTQSDSG 129 CRSS T P P S+W + T S SG Sbjct: 1122 CRSSPTRRGPTRSPTPSYWRTCTASVSG 1205
>LOC_Os11g30700:12011.t02672:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4810 Score = 29.5 bits (58), Expect = 6.8 Identities = 8/28 (28%), Positives = 14/28 (50%) Frame = -2 / +2 Query: 239 FYSAAIASHCRSSSTHHNP*FRPNKSHW 156 F+ + + H HH P P+++HW Sbjct: 1814 FFLSGLRPHLHCYGVHHGPLASPSRAHW 1897
>LOC_Os07g41230:12007.t03778:unspliced-genomic esterase PIR7B, putative, expressed| Length = 4300 Score = 29.5 bits (58), Expect = 6.8 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 / +3 Query: 113 GSLITLLARRSQAVEFSSPYAKTLTCSLLN 24 G + L AR + VEFS+PY+ +CS N Sbjct: 435 GLALALRARVRRRVEFSAPYSFDFSCSSPN 524
>LOC_Os05g31490:12005.t02746:unspliced-genomic expressed protein| Length = 4787 Score = 29.5 bits (58), Expect = 6.8 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -2 / +3 Query: 233 SAAIASHCRSSSTHHNP*FRPNKSHW 156 S ++AS C+S HH+P RP+ W Sbjct: 3855 STSVASSCQSFYLHHHPAQRPSVP*W 3932
>LOC_Os01g16930:12001.t01542:unspliced-genomic presenilin, putative, expressed| Length = 1605 Score = 29.5 bits (58), Expect = 6.8 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 / -1 Query: 104 SGIPHFHHNHYRFACLITSVIYL 172 + IPHFHH R L+ SVI + Sbjct: 795 TNIPHFHHGAARIILLLYSVILI 727
>LOC_Os09g36560:12009.t03132:unspliced-genomic thaumatin-like protein 1 precursor, putative| Length = 1737 Score = 26.3 bits (51), Expect(2) = 6.8 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -3 / +3 Query: 88 AGRRQLSSAAHTPRP*LAA 32 +GRR+ A H PRP LAA Sbjct: 1674 SGRRRARVALHRPRPPLAA 1730 Score = 21.7 bits (41), Expect(2) = 6.8 Identities = 7/12 (58%), Positives = 8/12 (66%) Frame = -2 / +1 Query: 161 HW*SSTQSDSGC 126 HW*S+ Q S C Sbjct: 67 HW*SAVQCGSSC 102
>LOC_Os11g45390:12011.t04066:unspliced-genomic von Willebrand factor type A domain containing protein| Length = 7267 Score = 29.5 bits (58), Expect = 7.0 Identities = 7/13 (53%), Positives = 10/13 (76%) Frame = -1 / -1 Query: 150 KHAKR*WLWWKCG 112 +H +R W WW+CG Sbjct: 3643 RHRRRWW*WWRCG 3605
>LOC_Os05g51190:12005.t04547:unspliced-genomic ATP binding protein, putative, expressed| Length = 4785 Score = 29.5 bits (58), Expect = 7.0 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = -1 / +3 Query: 141 KR*WLWWKCGIP 106 +R WLWW CG P Sbjct: 834 RRRWLWWPCGPP 869
>LOC_Os01g71840:12001.t06476:unspliced-genomic retrotransposon protein, putative, unclassified, expressed| Length = 15432 Score = 29.5 bits (58), Expect = 7.0 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 / +3 Query: 28 SKLQVKVLAYGLLNSTACDLRASRVIRDPTL 120 S L+VKV +G L C L S +R PTL Sbjct: 5319 SPLKVKVETFGALLFIICRLLHSNTVRQPTL 5411
>LOC_Os01g34080:12001.t02971:unspliced-genomic armadillo/beta-catenin-like repeat family protein, expressed| Length = 11207 Score = 27.6 bits (54), Expect(2) = 7.7 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 / +2 Query: 70 STACDLRASRVIRDPTLPPQP 132 + AC R SRV + PT PP P Sbjct: 86 AAACAARRSRVPQPPTEPPPP 148 Score = 22.6 bits (43), Expect(2) = 7.7 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +2 / +1 Query: 209 GNGLLLRLNKSIMYWTLKQ 265 G L + NKS++YW++ Q Sbjct: 7489 GKHLQVCKNKSLLYWSI*Q 7545
>LOC_Os08g42980:12008.t04026:unspliced-genomic RNA binding protein, putative, expressed| Length = 5466 Score = 27.6 bits (54), Expect(2) = 7.9 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 / +1 Query: 157 QCDLFGLNHGL*CVLLLRQWLAIAA 231 QC+LF LNHGL + LR + + A Sbjct: 4300 QCNLFSLNHGLIFKMHLRFTIVLYA 4374 Score = 21.7 bits (41), Expect(2) = 7.9 Identities = 5/9 (55%), Positives = 7/9 (77%) Frame = +2 / +3 Query: 113 PHFHHNHYR 139 PH HH H++ Sbjct: 303 PHHHHQHHQ 329
>LOC_Os12g41650:12012.t03841:unspliced-genomic phytochrome-interacting factor 4, putative, expressed| Length = 4317 Score = 27.2 bits (53), Expect(2) = 8.3 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = -1 / +1 Query: 279 FFFFFCLRVQYIILLFSRNS 220 +FFFFCL V + + F++++ Sbjct: 406 YFFFFCLVVSVVAVCFNKST 465 Score = 21.7 bits (41), Expect(2) = 8.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = -3 / +2 Query: 88 AGRRQLSSAAHTPR 47 AGRR SAA +PR Sbjct: 1472 AGRRARRSAARSPR 1513
>LOC_Os12g40570:12012.t03736:unspliced-genomic WRKY transcription factor 21, putative, expressed| Length = 3678 Score = 29.0 bits (57), Expect = 9.4 Identities = 8/18 (44%), Positives = 12/18 (66%) Frame = +3 / +3 Query: 174 SKSWIMMCTTTAAMACYC 227 S+ W++ CT+ AM C C Sbjct: 2850 SRIWLLACTSLLAMTCLC 2903
>LOC_Os10g39810:12010.t03224:unspliced-genomic C-4 methylsterol oxidase, putative, expressed| Length = 2964 Score = 29.0 bits (57), Expect = 9.4 Identities = 8/20 (40%), Positives = 12/20 (60%) Frame = +3 / +3 Query: 171 WSKSWIMMCTTTAAMACYCG 230 W SW+ +TT ++ CY G Sbjct: 882 WCTSWLRTTSTTGSIGCYMG 941
>LOC_Os06g19170:12006.t01740:unspliced-genomic expressed protein| Length = 3084 Score = 29.0 bits (57), Expect = 9.4 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = -2 / -3 Query: 245 LYFYSAAIASHCRSSSTHHN 186 L+F +++ HC SSS HH+ Sbjct: 1438 LHFLCSSVLQHCLSSSLHHH 1379
>LOC_Os04g47410:12004.t04267:unspliced-genomic metal ion binding protein, putative, expressed| Length = 5671 Score = 29.0 bits (57), Expect = 9.4 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = -2 / +3 Query: 131 GCGGSVGSLITLLARRSQAVEFSSPYAKTLTCSL 30 GCGG G TL +RRS V+ A T C+L Sbjct: 153 GCGGGGGDDATLRSRRSLRVDPGPIPAATPRCAL 254
>LOC_Os02g26600:12002.t02354:unspliced-genomic expressed protein| Length = 4398 Score = 29.0 bits (57), Expect = 9.4 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 / +2 Query: 117 TSTTTTIALRA*LPV*FIWSKSWIMMCTTTA 209 T+TTTT R+ P+ WS SW C ++A Sbjct: 1496 TTTTTTTPSRSTPPLRTTWSPSWRA*CPSSA 1588
>LOC_Os01g72890:12001.t06574:unspliced-genomic serine/arginine repetitive matrix protein 1, putative, expressed| Length = 5025 Score = 29.0 bits (57), Expect = 9.4 Identities = 6/14 (42%), Positives = 13/14 (92%) Frame = +2 / +1 Query: 116 HFHHNHYRFACLIT 157 +FH+NHY++ C+++ Sbjct: 2401 YFHYNHYKYCCMMS 2442
>LOC_Os01g49470:12001.t04386:unspliced-genomic CHY zinc finger family protein, expressed| Length = 11098 Score = 29.0 bits (57), Expect = 9.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -2 / +1 Query: 239 FYSAAIASHCRSSSTHHNP*FRPN 168 F S+ HC+ S HNP* RP+ Sbjct: 2008 FPSSLFCGHCQGYSRVHNP*VRPH 2079
>LOC_Os01g24770:12001.t02196:unspliced-genomic hypothetical protein| Length = 778 Score = 29.0 bits (57), Expect = 9.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = -2 / +1 Query: 233 SAAIASHCRSSSTHHNP*FRPNKSH 159 S+A+A C SSS +P F P+K H Sbjct: 301 SSALAVRCPSSSPSPSPFFPPSKQH 375
>LOC_Os08g17870:12008.t01657:unspliced-genomic expressed protein| Length = 7267 Score = 29.0 bits (57), Expect = 9.6 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = -1 / +1 Query: 138 R*WLWWKCGIPDYSTRTQ 85 R WLWWKC P R Q Sbjct: 838 RRWLWWKCRKPTIWMRKQ 891
>LOC_Os06g28760:12006.t02580:unspliced-genomic hypothetical protein| Length = 1721 Score = 29.0 bits (57), Expect = 9.6 Identities = 8/16 (50%), Positives = 14/16 (87%) Frame = -1 / +2 Query: 282 VFFFFFCLRVQYIILL 235 ++FFFFC+ +Q ++LL Sbjct: 1646 IYFFFFCVNLQAVLLL 1693
>LOC_Os04g13980:12004.t01218:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 1008 Score = 29.0 bits (57), Expect = 9.6 Identities = 19/53 (35%), Positives = 23/53 (43%) Frame = +1 / +1 Query: 10 EQSLPLSKLQVKVLAYGLLNSTACDLRASRVIRDPTLPPQPLSLCVLDYQCDL 168 E L S+ QV+ L L +TA AS P PP P+ DY C L Sbjct: 355 EAQLQSSQQQVRELEEQLGAATATTTAASTSTAPPPPPPAPVCDHHFDYYCFL 513
>LOC_Os03g27780:12003.t02451:unspliced-genomic Ca2+/calmodulin-dependent protein kinase phosphatase, putative,| expressed Length = 3672 Score = 29.0 bits (57), Expect = 9.6 Identities = 8/17 (47%), Positives = 13/17 (76%) Frame = -1 / +3 Query: 276 FFFFCLRVQYIILLFSR 226 +FFFC +QY++L F + Sbjct: 2178 YFFFCFPIQYLLLYFCK 2228 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 126,702,403 Number of extensions: 2179036 Number of successful extensions: 7586 Number of sequences better than 10.0: 36 Length of query: 94 Length of database: 55,613,886 Length adjustment: 45 Effective length of query: 49 Effective length of database: 53,081,376 Effective search space: 2600987424 Effective search space used: 2600987424 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)