ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf65o16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q9WV48:SHAN1_RAT SH3 and multiple ankyrin repeat domains protein... 30 3.3
2Q4V887:S39A6_RAT Zinc transporter SLC39A6 precursor - Rattus nor... 29 7.4
3Q8C145:S39A6_MOUSE Zinc transporter SLC39A6 precursor - Mus musc... 29 7.4
4Q9P889:CREA_ASPOR DNA-binding protein creA - Aspergillus oryzae 29 9.6
5Q6SZ61:CD2_MACFA T-cell surface antigen CD2 precursor - Macaca f... 29 9.6

>Q9WV48:SHAN1_RAT SH3 and multiple ankyrin repeat domains protein 1 - Rattus norvegicus|
            (Rat)
          Length = 2167
 Score = 30.4 bits (67), Expect = 3.3
 Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
 Frame = -1

Query: 205  TEDGGR---LLH--VLPQQHHRRAHAYNRQDQVGQRHRRPTNSPQNPSARRGSSPE 53
            T  GGR   L H   LP  HH   H ++      Q H    + P  P    G SP+
Sbjct: 986  TRGGGREKSLYHSAALPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPD 1041



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>Q4V887:S39A6_RAT Zinc transporter SLC39A6 precursor - Rattus norvegicus (Rat)|
          Length = 741

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 211 VATEDGGRLLHVLPQQHHRRAHAYNRQDQVGQRHRRPTNSPQNPSARRGSSPEFGARKGL 32
           V T  G  LLH+LP  H    H+++ ++   +  R P  S  +      SS      KGL
Sbjct: 352 VGTLSGDALLHLLPHSHASHHHSHSHEEPAMEMKRGPLFSHLSAQNLEESSYFDSTWKGL 411



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>Q8C145:S39A6_MOUSE Zinc transporter SLC39A6 precursor - Mus musculus (Mouse)|
          Length = 765

 Score = 29.3 bits (64), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 211 VATEDGGRLLHVLPQQHHRRAHAYNRQDQVGQRHRRP 101
           V T  G  LLH+LP  H    H+++ ++   +  R P
Sbjct: 376 VGTLSGDALLHLLPHSHASHQHSHSHEEPAMEMKRGP 412



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>Q9P889:CREA_ASPOR DNA-binding protein creA - Aspergillus oryzae|
          Length = 429

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 160 HRRAHAYNRQDQVGQRHRRPTNSPQNPSARRGSSPEF 50
           H  + +++ +D+ G  HR   + P +P++   SSP F
Sbjct: 269 HSMSRSHSHEDEDGYTHRVKRSRPNSPNSTAPSSPTF 305



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>Q6SZ61:CD2_MACFA T-cell surface antigen CD2 precursor - Macaca fascicularis (Crab|
           eating macaque) (Cynomolgus monkey)
          Length = 351

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 154 RAHAYNRQDQVGQRHRRPTNSPQNPSARRGSSPEFGAR 41
           RAH    +++  + H+ P ++PQNP+A +   P  G R
Sbjct: 252 RAHRVATEERGRKPHQIPASTPQNPAASQHPPPPPGHR 289


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 79,106,272
Number of extensions: 1555270
Number of successful extensions: 4890
Number of sequences better than 10.0: 5
Number of HSP's gapped: 4882
Number of HSP's successfully gapped: 5
Length of query: 163
Length of database: 100,686,439
Length adjustment: 104
Effective length of query: 59
Effective length of database: 72,159,759
Effective search space: 4257425781
Effective search space used: 4257425781
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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