ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf65o01 |
|---|---|
| Clone Library Name | barley_pub |
>Q9M0V3:DDB1A_ARATH DNA damage-binding protein 1a - Arabidopsis thaliana (Mouse-ear| cress) Length = 1088 Score = 815 bits (2104), Expect = 0.0 Identities = 399/502 (79%), Positives = 448/502 (89%) Frame = +2 Query: 83 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 262 MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 263 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 442 RIAT+ELFRPH EAQDFLFIATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL+GC +PTI VL Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL 180 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQDNKDARHVKTYEV+LK+KDFVEGPWSQN+LDNGA LLIPVP PL YC Sbjct: 181 YQDNKDARHVKTYEVSLKDKDFVEGPWSQNSLDNGADLLIPVPPPLCGVLIIGEETIVYC 240 Query: 803 NANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERERVTGLKIEHLGE 982 +A S F+AIPI+ SIT+AYGRVD DGSRYLLGD++G++HLLV+T E+E+VTGLKIE LGE Sbjct: 241 SA-SAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGMIHLLVITHEKEKVTGLKIELLGE 299 Query: 983 TSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDFCVVDL 1162 TS+AS+ISYLDN VV+VGS + DSQLVKL+L PDA GS+VE+LERY+NLGPIVDFCVVDL Sbjct: 300 TSIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDL 359 Query: 1163 DRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDLYDMYLVV 1342 +RQGQGQVVTCSGAFKDGS+RVVRNGIGINEQASVELQGIKG+WSLKSS + +D +LVV Sbjct: 360 ERQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVV 419 Query: 1343 SFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSREL 1522 SFISETR LAMN+ GF +Q+QTLFC +A+ + L+QVT+NSVRLVS T+REL Sbjct: 420 SFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTREL 479 Query: 1523 VDQWNAPEGFSVNVASANASQV 1588 D+W+AP GF+VNVA+ANASQV Sbjct: 480 RDEWHAPAGFTVNVATANASQV 501
>Q6QNU4:DDB1_SOLLC DNA damage-binding protein 1 - Solanum lycopersicum (Tomato)| (Lycopersicon esculentum) Length = 1090 Score = 809 bits (2089), Expect = 0.0 Identities = 393/502 (78%), Positives = 446/502 (88%) Frame = +2 Query: 83 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 262 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 263 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 442 RIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQI 120 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC +PTIVVL Sbjct: 121 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKPTIVVL 180 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQDNKDARHVKTYEV+LK+KDF+EGPW+QNNLDNGA LLIPVP PL YC Sbjct: 181 YQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEETIVYC 240 Query: 803 NANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERERVTGLKIEHLGE 982 +A S F+AIPI+ SITRAYGRVD DGSRYLLGD++G+LHLLV+T E+E+VTGLKIE LGE Sbjct: 241 SA-SAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKIELLGE 299 Query: 983 TSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDFCVVDL 1162 TS+AS+ISYLDN V++GS + DSQLVKL+LQPD GS+VE+LERYVNLGPIVDFCVVDL Sbjct: 300 TSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDL 359 Query: 1163 DRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDLYDMYLVV 1342 +RQGQGQVVTCSGA+KDGS+R+VRNGIGINEQASVELQGIKG+WSL+S+ D YD +LVV Sbjct: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYDTFLVV 419 Query: 1343 SFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSREL 1522 SFISETR LAMN+ GF++Q+QTLFC +A+ + L+QVT+NSVRLVS TSR+L Sbjct: 420 SFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTSRDL 479 Query: 1523 VDQWNAPEGFSVNVASANASQV 1588 ++W AP G+SVNVA+ANA+QV Sbjct: 480 KNEWFAPVGYSVNVATANATQV 501
>Q6E7D1:DDB1_SOLCE DNA damage-binding protein 1 - Solanum cheesmanii (Galapagos island| tomato) (Lycopersicon cheesmanii) Length = 1095 Score = 803 bits (2073), Expect = 0.0 Identities = 393/507 (77%), Positives = 446/507 (87%), Gaps = 5/507 (0%) Frame = +2 Query: 83 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQ-----PMLD 247 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQ PMLD Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60 Query: 248 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPT 427 VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MGDVSDRIGRPT Sbjct: 61 VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120 Query: 428 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRP 607 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC +P Sbjct: 121 DNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCPKP 180 Query: 608 TIVVLYQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXX 787 TIVVLYQDNKDARHVKTYEV+LK+KDF+EGPW+QNNLDNGA LLIPVP PL Sbjct: 181 TIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWAQNNLDNGASLLIPVPPPLCGVLIIGEE 240 Query: 788 XXXYCNANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERERVTGLKI 967 YC+A S F+AIPI+ SITRAYGRVD DGSRYLLGD++G+LHLLV+T E+E+VTGLKI Sbjct: 241 TIVYCSA-SAFKAIPIRPSITRAYGRVDADGSRYLLGDHNGLLHLLVITHEKEKVTGLKI 299 Query: 968 EHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDF 1147 E LGETS+AS+ISYLDN V++GS + DSQLVKL+LQPD GS+VE+LERYVNLGPIVDF Sbjct: 300 ELLGETSIASTISYLDNAFVFIGSSYGDSQLVKLNLQPDTKGSYVEVLERYVNLGPIVDF 359 Query: 1148 CVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDLYD 1327 CVVDL+RQGQGQVVTCSGA+KDGS+R+VRNGIGINEQASVELQGIKG+WSL+S+ D YD Sbjct: 360 CVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSATDDPYD 419 Query: 1328 MYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSC 1507 +LVVSFISETR LAMN+ GF++Q+QTLFC +A+ + L+QVT+NSVRLVS Sbjct: 420 TFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLVSS 479 Query: 1508 TSRELVDQWNAPEGFSVNVASANASQV 1588 TSR+L ++W AP G+SVNVA+ANA+QV Sbjct: 480 TSRDLKNEWFAPVGYSVNVATANATQV 506
>O49552:DDB1B_ARATH DNA damage-binding protein 1b - Arabidopsis thaliana (Mouse-ear| cress) Length = 1088 Score = 796 bits (2056), Expect = 0.0 Identities = 389/502 (77%), Positives = 445/502 (88%) Frame = +2 Query: 83 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 262 MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60 Query: 263 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQI 442 RIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD E SEL+TR+MGDVSDRIGRPTDNGQI Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDPDCR+IGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGC +PTI VL Sbjct: 121 GIIDPDCRVIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCTKPTIAVL 180 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQDNKDARHVKTYEV+LK+K+FVEGPWSQNNLDNGA LLIPVP+PL YC Sbjct: 181 YQDNKDARHVKTYEVSLKDKNFVEGPWSQNNLDNGADLLIPVPSPLCGVLIIGEETIVYC 240 Query: 803 NANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERERVTGLKIEHLGE 982 +AN+ F+AIPI+ SIT+AYGRVD DGSRYLLGD++G++HLLV+T E+E+VTGLKIE LGE Sbjct: 241 SANA-FKAIPIRPSITKAYGRVDLDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGE 299 Query: 983 TSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDFCVVDL 1162 TS+ASSISYLDN VV+VGS + DSQL+KL+LQPDA GS+VEILE+YVNLGPIVDFCVVDL Sbjct: 300 TSIASSISYLDNAVVFVGSSYGDSQLIKLNLQPDAKGSYVEILEKYVNLGPIVDFCVVDL 359 Query: 1163 DRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDLYDMYLVV 1342 +RQGQGQVVTCSGA+KDGS+R+VRNGIGINEQASVELQGIKG+WSLKSS + +D +LVV Sbjct: 360 ERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVV 419 Query: 1343 SFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSREL 1522 SFISETR LAMN+ GF +++QTLFC +A+ + L+QVT+NSVRLVS T+REL Sbjct: 420 SFISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLVSSTTREL 479 Query: 1523 VDQWNAPEGFSVNVASANASQV 1588 ++W+AP GFSVNVA+ANASQV Sbjct: 480 RNKWDAPAGFSVNVATANASQV 501
>Q805F9:DDB1_CHICK DNA damage-binding protein 1 - Gallus gallus (Chicken)| Length = 1140 Score = 513 bits (1321), Expect = e-144 Identities = 266/538 (49%), Positives = 366/538 (68%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+ Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKT 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ + + +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQNGDNIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + + +AFNIRLEELQV+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 MDNMLVLSFVGQTRVLMLN-GEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P G +++VAS N++QV + L I P R +N ++ ++ Sbjct: 480 SQEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQINCTEMEHE 537
>A1A4K3:DDB1_BOVIN DNA damage-binding protein 1 - Bos taurus (Bovine)| Length = 1140 Score = 511 bits (1316), Expect = e-144 Identities = 267/538 (49%), Positives = 366/538 (68%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S + Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P+G +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>Q3U1J4:DDB1_MOUSE DNA damage-binding protein 1 - Mus musculus (Mouse)| Length = 1140 Score = 511 bits (1315), Expect = e-144 Identities = 267/538 (49%), Positives = 365/538 (67%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P+G +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>Q5R649:DDB1_PONPY DNA damage-binding protein 1 - Pongo pygmaeus (Orangutan)| Length = 1140 Score = 509 bits (1311), Expect = e-143 Identities = 266/538 (49%), Positives = 365/538 (67%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNVCILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S + Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P+ +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>Q16531:DDB1_HUMAN DNA damage-binding protein 1 - Homo sapiens (Human)| Length = 1140 Score = 509 bits (1310), Expect = e-143 Identities = 266/538 (49%), Positives = 365/538 (67%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S + Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P+ +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>P33194:DDB1_CERAE DNA damage-binding protein 1 - Cercopithecus aethiops (Green monkey)| (Grivet) Length = 1140 Score = 506 bits (1304), Expect = e-142 Identities = 265/538 (49%), Positives = 364/538 (67%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ +FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQLVKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S + Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P+ +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>Q9ESW0:DDB1_RAT DNA damage-binding protein 1 - Rattus norvegicus (Rat)| Length = 1140 Score = 504 bits (1299), Expect = e-142 Identities = 264/538 (49%), Positives = 363/538 (67%), Gaps = 9/538 (1%) Frame = +2 Query: 89 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 268 ++NYVVTA KPT+V+ G+FT +NL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDINLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 269 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEKSELLTRSMGDVSDRIGRPTDNGQI 442 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G+V DRIGRP++ G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVL 622 GIIDP+CR+IGL LYDGLFKVIP D + +AFNIRLEEL V+D+KFLYGC PTI + Sbjct: 122 GIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFV 181 Query: 623 YQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYC 802 YQD + RHVKTYEV+L+EK+F +GPW Q N++ A ++I VP P Y Sbjct: 182 YQDPQ-GRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 240 Query: 803 NANSTFRAIP--IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERER-----VTGL 961 N + P IKQS + RVDP+GSRYLLGD G L +L+L +E + + L Sbjct: 241 NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL 300 Query: 962 KIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIV 1141 ++E LGETS+A ++YLDNGVV+VGSR DSQ VKL++ + GS+V +E + NLGPIV Sbjct: 301 RVELLGETSIAECLTYLDNGVVFVGSRLGDSQPVKLNVDSNEQGSYVVAMETFTNLGPIV 360 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSLKSSFSDL 1321 D CVVDL+RQGQGQ+VTCSGAFK+GS+R++RNGIGI+E AS++L GIKGLW L+S + Sbjct: 361 DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRE 420 Query: 1322 YDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLV 1501 D LV+SF+ +TR L +N GF QT FC N + LIQ+T+ SVRLV Sbjct: 421 TDDTLVLSFVGQTRVLMLN-GEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479 Query: 1502 SCTSRELVDQWNAPEGFSVNVASANASQVGYLHVTRPFSLGILPMMTRSLNMCDIIYD 1675 S + LV +W P +++VAS N+SQV + L I P R ++ ++ ++ Sbjct: 480 SQEPKALVSEWKEPRAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHE 537
>O13807:DDB1_SCHPO DNA damage-binding protein 1 - Schizosaccharomyces pombe (Fission| yeast) Length = 1072 Score = 220 bits (560), Expect = 2e-56 Identities = 152/517 (29%), Positives = 265/517 (51%), Gaps = 20/517 (3%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 277 YV HKP+S+ ++ F N+IVAK +E++ L + I+ +I + Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62 Query: 278 ELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTR-SMGDVSDRIGRPTDNGQIGIID 454 + F+P + D + +AT+ +++ L WDA + + + D S+R R + +G + ++D Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDANDNTVSNGIKIQDCSERSLRESQSGPLLLVD 122 Query: 455 PDCRLIGLHLYDGLFKVIPF----------DNKGQLKEAFNIRLEELQVLDIKFLYGCLR 604 P R+I LH+Y GL +IP N L + F++R++EL V+DI LY R Sbjct: 123 PFQRVICLHVYQGLLTIIPIFKSKKRFMTSHNNPSLHDNFSVRIQELNVVDIAMLYNSSR 182 Query: 605 PTIVVLYQDNKDARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXX 784 P++ VLY+D+K H+ TY++ ++E++ E ++++ G +P+ Sbjct: 183 PSLAVLYKDSKSIVHLSTYKINVREQEIDEDDVVCHDIEEGK----LIPSENGGVFVFGE 238 Query: 785 XXXXYCNANSTFRAIPIKQSITRAYGRV--DP----DGSRYLLGDNSGILHLLVLTQERE 946 Y + + + + IT + DP D S Y++ D SG+L+ E Sbjct: 239 MYVYYISKDIQVSKLLLTYPITAFSPSISNDPETGLDSSIYIVADESGMLYKFKALFTDE 298 Query: 947 RVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKLDLQPDAT--GSFVEILERY 1120 V+ +++E LGE+S+AS + L + ++VGS F++S L++L P T +EIL+ + Sbjct: 299 TVS-MELEKLGESSIASCLIALPDNHLFVGSHFNNSVLLQL---PSITKNNHKLEILQNF 354 Query: 1121 VNLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSL 1300 VN+ PI DF ++D D+ G ++TCSGA+KDG++R++RN I I A +E++GIK +S+ Sbjct: 355 VNIAPISDF-IIDDDQTG-SSIITCSGAYKDGTLRIIRNSINIENVALIEMEGIKDFFSV 412 Query: 1301 KSSFSDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAI-NDLLIQV 1477 SF YD Y+ +S I ETR A+ + + T+F N ++Q+ Sbjct: 413 --SFRANYDNYIFLSLICETR--AIIVSPEGVFSANHDLSCEESTIFVSTIYGNSQILQI 468 Query: 1478 TANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQV 1588 T +RL + + W +P S+ S+ A V Sbjct: 469 TTKEIRLF---DGKKLHSWISP--MSITCGSSFADNV 500
>Q1LVE8:SF3B3_DANRE Splicing factor 3B subunit 3 - Danio rerio (Zebrafish) (Brachydanio| rerio) Length = 1217 Score = 100 bits (249), Expect = 2e-20 Identities = 116/559 (20%), Positives = 225/559 (40%), Gaps = 62/559 (11%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG----LQPMLDVPIYGR 265 Y +T + T +SH+ GNF+G Q ++V++ +E LL P + +L + ++G Sbjct: 4 YNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILE--LLRPDANTGKVHTLLTMEVFGV 61 Query: 266 IATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQI 442 + ++ FR +D++ + ++ + +L++ K+ + + + + G R GQ Sbjct: 62 VRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKN-MFEKIHQETFGKSGCRRIVPGQF 120 Query: 443 GIIDPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRP 607 +DP R +IG L ++ D +L + + + L + G P Sbjct: 121 LAVDPKGRAVMIGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP 180 Query: 608 TIVVLYQDNKDARHVKTYEVALKEKD---FVEGPWSQNN--------LDNGAGLLIPVPA 754 L D ++A + T E A + F E N+ L+ LI VP Sbjct: 181 MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG 240 Query: 755 PLXXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDPDGSR---------------- 886 Y + I+ I R +D D R Sbjct: 241 GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMF 299 Query: 887 -YLLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLV 1063 +L G + + L + E VT +++++ VA+++ L G ++V S F + L Sbjct: 300 FFLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLY 359 Query: 1064 KL------DLQPDATGSF-----------------VEILERYVNLGPIVDFCVVDLDRQG 1174 ++ D +P+ + + + +++ +L PI+ + DL + Sbjct: 360 QIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANED 419 Query: 1175 QGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQG-IKGLWSLKSSFSDLYDMYLVVSFI 1351 Q+ G ++RV+R+G+ ++E A EL G +W+++ D +D Y++VSF+ Sbjct: 420 TPQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFV 479 Query: 1352 SETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDQ 1531 + T L +++ GF TL C D L+QV + +R + R V++ Sbjct: 480 NAT--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKR--VNE 535 Query: 1532 WNAPEGFSVNVASANASQV 1588 W P ++ + N QV Sbjct: 536 WKTPGKKTIIRCAVNQRQV 554
>Q4WLI5:RSE1_ASPFU Pre-mRNA-splicing factor rse1 - Aspergillus fumigatus (Sartorya| fumigata) Length = 1225 Score = 99.8 bits (247), Expect = 4e-20 Identities = 118/572 (20%), Positives = 228/572 (39%), Gaps = 75/572 (13%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 271 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQIGII 451 T+ FR ++D++ I ++ + ++++ ++ + R GQ + Sbjct: 70 TLAAFRLAGSSKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRVVPGQYLAV 129 Query: 452 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCL-----RPTIV 616 DP R + + V + Q + + LE + + F L P Sbjct: 130 DPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTVVFAMTALDVGYENPIFA 189 Query: 617 VLYQDNKDARHVKT---YEVALKEKDFVEGPWSQNNL--------DNGAGLLIPVPAPLX 763 L D +A T YE + K + E N++ D A +L VP Sbjct: 190 ALEVDYSEADQDPTGRAYEESEKLLVYYELDLGLNHVVRKWADPVDRTASMLFQVPGGAD 249 Query: 764 XXXXXXXXXXX---YCNANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILHLL--- 925 Y ++N +PI + I +P+ R ++ +G++H + Sbjct: 250 GPSGVLVCAEDNITYRHSNQDAFRVPIPRRIGATE---NPERKRSIV---AGVMHKMRGA 303 Query: 926 ------------------VLTQERERVTG----LKIEHLGETSVASSISYLDNGVVYVGS 1039 ++ + ++TG LKI++ +ASS+ L +G +YV S Sbjct: 304 FFFLLQTEDGDLFKVTIDMVEDDNGQLTGEVKRLKIKYFDTVPIASSLLILKSGFLYVAS 363 Query: 1040 RFSDSQLVKLD----------------------------LQPDATGSFVEILERYVNLGP 1135 + + + QP + + ++E +L P Sbjct: 364 EAGNHHFYQFEKLGDDDEETEFNSENFPADLSVPCEPVFFQPRGAEN-LNLVETLNSLNP 422 Query: 1136 IVDFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLWSLKSSF 1312 ++D +V+L+ Q+ T SG+ S R +++G+ ++E EL + +W+ K + Sbjct: 423 LIDSKIVNLNEDDAPQIYTVSGSGARSSFRTLKHGLEVSEIVESELPSVPSAVWTTKLTR 482 Query: 1313 SDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSV 1492 +D +D Y+++SF + T L +++ GF + TL Q D LIQV + Sbjct: 483 ADEFDAYIILSFANGT--LVLSIGETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRGI 540 Query: 1493 RLVSCTSRELVDQWNAPEGFSVNVASANASQV 1588 R + R V++W AP+ S+ A+ N QV Sbjct: 541 RHILADRR--VNEWPAPQHRSIVAAATNERQV 570
>Q921M3:SF3B3_MOUSE Splicing factor 3B subunit 3 - Mus musculus (Mouse)| Length = 1217 Score = 97.4 bits (241), Expect = 2e-19 Identities = 113/557 (20%), Positives = 224/557 (40%), Gaps = 60/557 (10%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG--LQPMLDVPIYGRIA 271 Y +T + T +S + GNF+G Q ++V++ +E+ P + +L V ++G I Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGI 448 ++ FR +D++ + ++ + +L++ K+ + + + + G R GQ Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKN-MFEKIHQETFGKSGCRRIVPGQFLA 122 Query: 449 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTI 613 +DP R + + + L ++ D +L + + + L + G P Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182 Query: 614 VVLYQDNKDARHVKTYEVALKEKD---FVEGPWSQNN--------LDNGAGLLIPVPAPL 760 L D ++A + T E A + F E N+ L+ LI VP Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242 Query: 761 XXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDPDGSR-----------------Y 889 Y + I+ I R +D D R + Sbjct: 243 DGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMFFF 301 Query: 890 LLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKL 1069 L G + + L + + VT +++++ VA+++ L G ++V S F + L ++ Sbjct: 302 LAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQI 361 Query: 1070 ------DLQPDATGSF-----------------VEILERYVNLGPIVDFCVVDLDRQGQG 1180 D +P+ + + + +++ +L PI+ + DL + Sbjct: 362 AHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTP 421 Query: 1181 QVVTCSGAFKDGSIRVVRNGIGINEQASVELQG-IKGLWSLKSSFSDLYDMYLVVSFISE 1357 Q+ G S+RV+R+G+ ++E A EL G +W+++ D +D Y++VSF++ Sbjct: 422 QLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNA 481 Query: 1358 TRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDQWN 1537 T L +++ GF TL C +D L+QV + +R + R V++W Sbjct: 482 T--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR--VNEWK 537 Query: 1538 APEGFSVNVASANASQV 1588 P ++ + N QV Sbjct: 538 TPGKKTIVKCAVNQRQV 554
>Q15393:SF3B3_HUMAN Splicing factor 3B subunit 3 - Homo sapiens (Human)| Length = 1217 Score = 97.4 bits (241), Expect = 2e-19 Identities = 113/557 (20%), Positives = 224/557 (40%), Gaps = 60/557 (10%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG--LQPMLDVPIYGRIA 271 Y +T + T +S + GNF+G Q ++V++ +E+ P + +L V ++G I Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGI 448 ++ FR +D++ + ++ + +L++ K+ + + + + G R GQ Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKN-MFEKIHQETFGKSGCRRIVPGQFLA 122 Query: 449 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTI 613 +DP R + + + L ++ D +L + + + L + G P Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182 Query: 614 VVLYQDNKDARHVKTYEVALKEKD---FVEGPWSQNN--------LDNGAGLLIPVPAPL 760 L D ++A + T E A + F E N+ L+ LI VP Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242 Query: 761 XXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDPDGSR-----------------Y 889 Y + I+ I R +D D R + Sbjct: 243 DGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMFFF 301 Query: 890 LLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKL 1069 L G + + L + + VT +++++ VA+++ L G ++V S F + L ++ Sbjct: 302 LAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQI 361 Query: 1070 ------DLQPDATGSF-----------------VEILERYVNLGPIVDFCVVDLDRQGQG 1180 D +P+ + + + +++ +L PI+ + DL + Sbjct: 362 AHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTP 421 Query: 1181 QVVTCSGAFKDGSIRVVRNGIGINEQASVELQG-IKGLWSLKSSFSDLYDMYLVVSFISE 1357 Q+ G S+RV+R+G+ ++E A EL G +W+++ D +D Y++VSF++ Sbjct: 422 QLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNA 481 Query: 1358 TRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDQWN 1537 T L +++ GF TL C +D L+QV + +R + R V++W Sbjct: 482 T--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR--VNEWK 537 Query: 1538 APEGFSVNVASANASQV 1588 P ++ + N QV Sbjct: 538 TPGKKTIVKCAVNQRQV 554
>A0JN52:SF3B3_BOVIN Splicing factor 3B subunit 3 - Bos taurus (Bovine)| Length = 1217 Score = 97.4 bits (241), Expect = 2e-19 Identities = 113/557 (20%), Positives = 224/557 (40%), Gaps = 60/557 (10%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG--LQPMLDVPIYGRIA 271 Y +T + T +S + GNF+G Q ++V++ +E+ P + +L V ++G I Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGI 448 ++ FR +D++ + ++ + +L++ K+ + + + + G R GQ Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKN-MFEKIHQETFGKSGCRRIVPGQFLA 122 Query: 449 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTI 613 +DP R + + + L ++ D +L + + + L + G P Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182 Query: 614 VVLYQDNKDARHVKTYEVALKEKD---FVEGPWSQNN--------LDNGAGLLIPVPAPL 760 L D ++A + T E A + F E N+ L+ LI VP Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242 Query: 761 XXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDPDGSR-----------------Y 889 Y + I+ I R +D D R + Sbjct: 243 DGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMFFF 301 Query: 890 LLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKL 1069 L G + + L + + VT +++++ VA+++ L G ++V S F + L ++ Sbjct: 302 LAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQI 361 Query: 1070 ------DLQPDATGSF-----------------VEILERYVNLGPIVDFCVVDLDRQGQG 1180 D +P+ + + + +++ +L PI+ + DL + Sbjct: 362 AHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTP 421 Query: 1181 QVVTCSGAFKDGSIRVVRNGIGINEQASVELQG-IKGLWSLKSSFSDLYDMYLVVSFISE 1357 Q+ G S+RV+R+G+ ++E A EL G +W+++ D +D Y++VSF++ Sbjct: 422 QLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNA 481 Query: 1358 TRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDQWN 1537 T L +++ GF TL C +D L+QV + +R + R V++W Sbjct: 482 T--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR--VNEWK 537 Query: 1538 APEGFSVNVASANASQV 1588 P ++ + N QV Sbjct: 538 TPGKKTIVKCAVNQRQV 554
>Q5RBI5:SF3B3_PONPY Splicing factor 3B subunit 3 - Pongo pygmaeus (Orangutan)| Length = 1217 Score = 97.1 bits (240), Expect = 3e-19 Identities = 113/557 (20%), Positives = 224/557 (40%), Gaps = 60/557 (10%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG--LQPMLDVPIYGRIA 271 Y +T + T +S + GNF+G Q ++V++ +E+ P + +L V ++G I Sbjct: 4 YNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIR 63 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGI 448 ++ FR +D++ + ++ + +L++ K+ + + + + G R GQ Sbjct: 64 SLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKN-MFEKIHQETFGKSGCRRIVPGQFLA 122 Query: 449 IDPDCRLIGLHLYDG--LFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTI 613 +DP R + + + L ++ D +L + + + L + G P Sbjct: 123 VDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMF 182 Query: 614 VVLYQDNKDARHVKTYEVALKEKD---FVEGPWSQNN--------LDNGAGLLIPVPAPL 760 L D ++A + T E A + F E N+ L+ LI VP Sbjct: 183 ACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGS 242 Query: 761 XXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDPDGSR-----------------Y 889 Y + I+ I R +D D R + Sbjct: 243 DGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLD-DPERGMIFVCSATHKTKSMFFF 301 Query: 890 LLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKL 1069 L G + + L + + VT +++++ VA+++ L G ++V S F + L ++ Sbjct: 302 LAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQI 361 Query: 1070 ------DLQPDATGSF-----------------VEILERYVNLGPIVDFCVVDLDRQGQG 1180 D +P+ + + + +++ +L PI+ + DL + Sbjct: 362 AHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTP 421 Query: 1181 QVVTCSGAFKDGSIRVVRNGIGINEQASVELQG-IKGLWSLKSSFSDLYDMYLVVSFISE 1357 Q+ G S+RV+R+G+ ++E A EL G +W+++ D +D Y++VSF++ Sbjct: 422 QLYVACGRGPRSSLRVLRHGLEVSETAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNA 481 Query: 1358 TRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSRELVDQWN 1537 T L +++ GF TL C +D L+QV + +R + R V++W Sbjct: 482 T--LVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKR--VNEWK 537 Query: 1538 APEGFSVNVASANASQV 1588 P ++ + N QV Sbjct: 538 TPGKKTIVKCAVNQRQV 554
>Q5B1X8:RSE1_EMENI Pre-mRNA-splicing factor rse1 - Emericella nidulans (Aspergillus| nidulans) Length = 1226 Score = 96.7 bits (239), Expect = 3e-19 Identities = 124/565 (21%), Positives = 221/565 (39%), Gaps = 68/565 (12%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 271 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQIGII 451 T+ FR +D++ I ++ + ++++ ++ + R GQ + Sbjct: 70 TLAAFRLAGSNKDYIIIGSDSGRITIIEYVPSQNRFNRIHLETFGKSGVRRVVPGQYLAV 129 Query: 452 DPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLY---GCLRPTIV 616 DP R LI + L V+ +++ +L + + + Q L + G P Sbjct: 130 DPKGRACLIASVEKNKLVYVLNRNSQAELTISSPLEAHKPQTLVYSVVALDAGYENPVFA 189 Query: 617 VLYQDNKDARHVKT---YEVALKEKDFVEGPWSQNNL--------DNGAGLLIPVPAPLX 763 L D ++ T YE K + E N++ D + +L VP Sbjct: 190 ALEVDYSESDQDPTGRAYEEVEKLLVYYELDLGLNHVVRKWTDPVDRTSSMLFQVPGGAD 249 Query: 764 XXXXXXXXXXX---YCNANSTFRAIPI------------KQSITRAYGRVDPDGSRYLLG 898 Y ++N +PI K+ IT +LL Sbjct: 250 GPSGVLVCAEDNITYRHSNQDAFRVPIPRRKGAMENPERKRCITAGVMHKMRGAFFFLLQ 309 Query: 899 DNSGILHLLVLTQERE-------RVTGLKIEHLGETSVASSISYLDNGVVYV---GSRFS 1048 G L L L + V GLKI++ +ASS+ L +G +YV G Sbjct: 310 TEDGDLFKLTLDMVEDDKGQLTGEVKGLKIKYFDTVPLASSLLILKSGFLYVAAEGGNHH 369 Query: 1049 DSQLVKLDLQPDAT------------------------GSFVEILERYVNLGPIVDFCVV 1156 Q KL + T + ++E +L P+VD VV Sbjct: 370 FYQFEKLGDDDEETEFNSDDFSADPAAPCTPVYFQPRGAENLNLVEAINSLNPLVDSKVV 429 Query: 1157 DLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLWSLKSSFSDLYDMY 1333 ++ Q+ T SG + R +++G+ ++E EL + +W+ K + +D +D Y Sbjct: 430 NISEDDAPQIFTVSGTGARSTFRTLKHGLEVSEIVESELPSVPSAVWTTKLTRADEFDAY 489 Query: 1334 LVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTS 1513 +V+SF + T L +++ GF + TL Q D LIQ+ +R + Sbjct: 490 IVLSFANGT--LVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHILADR 547 Query: 1514 RELVDQWNAPEGFSVNVASANASQV 1588 R V++W AP+ S+ A+ N QV Sbjct: 548 R--VNEWPAPQHRSIVAAATNERQV 570
>Q7RYR4:RSE1_NEUCR Pre-mRNA-splicing factor rse-1 - Neurospora crassa| Length = 1271 Score = 92.8 bits (229), Expect = 5e-18 Identities = 130/570 (22%), Positives = 228/570 (40%), Gaps = 73/570 (12%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 271 Y +T PT+V+ + +G F+G + ++ A +R+ + P QG + +L I+G + Sbjct: 10 YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQIGII 451 I FR +D++ +AT+ + ++++ + ++ + R GQ Sbjct: 70 AIASFRLAGSHKDYIILATDSGRITIIEYLPKTNKFQRIHLETFGKSGVRRVIPGQYLAA 129 Query: 452 DPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTIV 616 DP R LI + L V+ +++ +L + + + VL + + G P Sbjct: 130 DPKGRACLISALEKNKLVYVLNRNSQAELTISSPLEAHKPGVLVLSLVALDVGYANPVFA 189 Query: 617 VLYQDNKDARHVKT-------------YEVALKEKDFVEGPWSQNNLDNGAGLLIPVPA- 754 L D DA T YE+ L V WS + +D + LL VP Sbjct: 190 ALELDYTDADQDPTGQAREEVETQLVYYELDLGLNHVVR-KWS-DTVDRTSSLLFQVPGG 247 Query: 755 ---PLXXXXXXXXXXXXYCNANSTFRA-IPIKQSITR--AYGRVDPDGSRYLLGDNSGIL 916 P + FR IP + T RV G + L ++G Sbjct: 248 NDGPSGVLVCGEENVTYRHSNQEAFRVPIPRRSGATEDPQRKRVIVSGVMHKLKGSAGAF 307 Query: 917 HLLVLTQERE------------------RVTGLKIEHLGETSVASSISYLDNGVVYVGSR 1042 L+ T + + V LKI++ VA+S+ L +G ++ S Sbjct: 308 FFLLQTDDGDLFKVTIDMIEDSDGNPTGEVKRLKIKYFDTIPVATSLCILKSGFLFAASE 367 Query: 1043 FSDS---QLVKL------------DLQPDATGSF------------VEILERYVNLGPIV 1141 F + Q KL D D T S+ + ++E ++ P V Sbjct: 368 FGNHHFYQFEKLGDDDEELEFSSDDFPTDPTASYNPVYFHPRPLENLVLVESIDSMNPQV 427 Query: 1142 DFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLWSLKSSFSD 1318 D V +L + Q+ + G + R++++G+ ++E + EL G +W+ K + D Sbjct: 428 DCKVANLTGEDAPQIYSVCGNGARSTFRMLKHGLEVSEIVASELPGTPSAVWTTKLTKYD 487 Query: 1319 LYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTANSVRL 1498 YD Y+V+SF + T L +++ GF TL Q D LIQV +R Sbjct: 488 QYDAYIVLSFTNGT--LVLSIGETVEEVSDSGFLTTAPTLAVQQMGEDGLIQVHPKGIRH 545 Query: 1499 VSCTSRELVDQWNAPEGFSVNVASANASQV 1588 + + V++W AP+ S+ A+AN +QV Sbjct: 546 I---VQGRVNEWPAPQHRSIVAATANENQV 572
>Q5KP25:RSE1_CRYNE Pre-mRNA-splicing factor RSE1 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 1217 Score = 92.0 bits (227), Expect = 8e-18 Identities = 130/574 (22%), Positives = 220/574 (38%), Gaps = 79/574 (13%) Frame = +2 Query: 104 VTAHKPTSVSHSCVGNFTGPHQLNLIVAKC-TRIEIHLL--TPQGLQPMLDVPIYGRIAT 274 +T PT+VS + VG+F+G ++ + T++EI L T L ++ +G I Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65 Query: 275 IELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQIGII 451 I FR +D++ ++ + +L++ + +V + G R GQ + Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEFVISPTPHFESLYQEVFGKSGSRRIVPGQFLAV 125 Query: 452 DPDCR--LIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFL---YGCLRPTIV 616 DP R L+G L V+ + +G+L + + + L + G P Sbjct: 126 DPKGRSCLVGSLEKTKLVYVLNRNTEGKLYPSSPLEAHKNHTLVTHIVGVDQGYDNPLYA 185 Query: 617 VLYQDNKDA-------------RHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAP 757 L D ++ +H+ YE+ L V WS+ D A LL+ VP Sbjct: 186 ALETDYSESDQDSTGEAYENTQKHLTFYELDLGLNHVVR-KWSEPT-DRRANLLVQVPGG 243 Query: 758 --LXXXXXXXXXXXXYCNANSTF---------------RAIPIKQSITRAYGRVDPDGSR 886 C + R P+ Q ++ G + Sbjct: 244 QNANSDRFEGPSGVLVCTEDHIIWKHMDVEAHRIPIPRRRNPLVQRGDKSRGLIIVSAVM 303 Query: 887 --------YLLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVVYVGSR 1042 +LL G L+ + + E V LKI++ VA+S+ L G +YV S Sbjct: 304 HKIKGAFFFLLQSEDGDLYKVWIEHNGEDVVALKIKYFDTVPVANSLCILKRGYIYVASE 363 Query: 1043 FSDSQLVKLDLQPDATG---------------------SFVE--------ILERYVNLGP 1135 FSD L + + G +F + +++ +L P Sbjct: 364 FSDQNLYQFQSLAEDDGEQEWSSTDYPENGNIDGPLPFAFFDPQPLRNLLLVDTVPSLDP 423 Query: 1136 IVDFCVVDL--DRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLWSLKS 1306 I D VV+L Q+ G + R +++G+ + E S L G+ +W+LK Sbjct: 424 ITDAHVVNLLGASSDTPQIYAACGRGARSTFRTLKHGLDVAEMVSSPLPGVPTNVWTLKL 483 Query: 1307 SFSDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVTAN 1486 + D YD Y+V+SF + T L +++ GF + TL Q N L+QV Sbjct: 484 TEDDEYDSYIVLSFPNGT--LVLSIGETIEEVNDTGFLSSGPTLAVQQLGNAGLLQVHPY 541 Query: 1487 SVRLVSCTSRELVDQWNAPEGFSVNVASANASQV 1588 +R + R VD+W AP G ++ A+ N QV Sbjct: 542 GLRHIRAADR--VDEWPAPPGQTIVAATTNRRQV 573
>Q52E49:RSE1_MAGGR Pre-mRNA-splicing factor RSE1 - Magnaporthe grisea (Rice blast| fungus) (Pyricularia grisea) Length = 1216 Score = 90.9 bits (224), Expect = 2e-17 Identities = 120/576 (20%), Positives = 237/576 (41%), Gaps = 79/576 (13%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 271 Y ++ P++++ + +G F+G + ++ A +R+ ++ P QG + P++ ++G I Sbjct: 10 YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69 Query: 272 TIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQIGII 451 + FR ++D+L IA++ + ++++ ++ + R GQ Sbjct: 70 DLASFRLAGSSKDYLIIASDSGRITIVEYLPAQNRFSRIHLETFGKSGVRRVVPGQYLAA 129 Query: 452 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLE---------ELQVLDIKF---LYG 595 DP R + + V + Q + + LE L LD+ + ++ Sbjct: 130 DPKGRACLIASVERCKLVYVLNRNSQAELTISSPLEAHKNGTLTLSLVALDVGYSNPVFA 189 Query: 596 CLRPTIVVLYQDNKD--ARHVKT----YEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAP 757 L + QD K A++V+T YE+ L V W + +D+ A +L VP Sbjct: 190 ALEVDYSEVDQDPKGDAAQNVETVLNYYELDLGLNHVVR-KWF-DVVDSTASMLFQVPGG 247 Query: 758 LXXXXXXXXXXXX---YCNANSTFRAIPIKQSITRAYGRVDPDGSRYLLGDNSGILH--- 919 Y ++N +PI + R DP R ++ SG++H Sbjct: 248 SDGPSGVLVCGEENITYRHSNQDAFRVPIPR---RKGATEDPSRKRNIV---SGVMHKLK 301 Query: 920 -------LLVLTQERE------------------RVTGLKIEHLGETSVASSISYLDNGV 1024 L+ T++ + V LKI++ V++++ L +G Sbjct: 302 GSAGAFFFLLQTEDGDLFKVTIDMVEDAEGNPTGEVRRLKIKYFDTIPVSNNLCILKSGF 361 Query: 1025 VYVGSRFSDS---QLVKLDLQPDATGSF------------------------VEILERYV 1123 ++V S F + Q KL + F + ++E Sbjct: 362 LFVASEFGNHLFYQFEKLGDDDEELEFFSSDFPVDPKEPYEPVYFYPRPTENLALVESID 421 Query: 1124 NLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLWSL 1300 ++ P++D V +L + Q+ T SG + R++++G+ +NE + +L G +W+ Sbjct: 422 SMNPLMDLKVANLTEEDAPQIYTVSGKGARSTFRMLKHGLEVNEIVASQLPGTPSAVWTT 481 Query: 1301 KSSFSDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQVT 1480 K D YD Y+V+SF + T L +++ GF + + TL Q +D L+QV Sbjct: 482 KLRRDDEYDAYIVLSFTNGT--LVLSIGETVEEVSDTGFLSSVPTLAVQQLGDDGLVQVH 539 Query: 1481 ANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQV 1588 +R + +V++W++P+ S+ A+ N QV Sbjct: 540 PKGIRHI---RNGVVNEWSSPQHRSIVAAATNERQV 572
>Q4PGM6:RSE1_USTMA Pre-mRNA-splicing factor RSE1 - Ustilago maydis (Smut fungus)| Length = 1221 Score = 80.1 bits (196), Expect = 3e-14 Identities = 115/563 (20%), Positives = 215/563 (38%), Gaps = 81/563 (14%) Frame = +2 Query: 98 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 265 Y +T SV+ + VG F+G Q +IVAK +R+E LL P +D + +G Sbjct: 7 YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64 Query: 266 IATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIG-RPTDNGQI 442 I ++ FR ++D++ + ++ + +L++ K+ L + + R G R GQ Sbjct: 65 IRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQP-KTNSLEKVHQETFGRSGSRRIVPGQY 123 Query: 443 GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLE---------ELQVLDIKF--- 586 DP R + + V + Q + LE + +D+ F Sbjct: 124 LATDPKGRATMIGAMEKAMLVYILNRDAQANLTISSPLEAHRPSAIIHHIVGVDVGFENP 183 Query: 587 LYGCLRPTIVVLYQDNKDARHVKTYEVALKEKDFVE---------GPWSQNNLDNGAGLL 739 L+ CL V Y D+ + +E A K + E WS+ +D + LL Sbjct: 184 LFACLE----VDYSDSDHDPSGRAFEEAAKTLTYYELDLGLNHVVRKWSEP-VDPRSNLL 238 Query: 740 IPVPAPLXXXXXXXXXXXX----------YCNANSTFRAIPIKQSITRAYGRVDPDGSR- 886 + VP Y + + +PI + + + G+ Sbjct: 239 VQVPGGYNQNLEKWDGPSGVLVCSEDYITYKHQDQPEHRVPIPKRLNPVEKLSERRGTLI 298 Query: 887 -------------YLLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYLDNGVV 1027 +L+ G L + + + + + LKI++ VAS + L +G + Sbjct: 299 VASVLHKMKNAFFFLVQTEDGDLFKITMEHQDDEIRSLKIKYFDTVPVASGLVILRSGFL 358 Query: 1028 YVGSRFSDSQL---------------VKLDLQPDATG---------------SFVEILER 1117 +V S + L + D + G + V++ + Sbjct: 359 FVASEYGAQLLYSFQKLGDDDDLPEYISTDYDENGAGRRRPQLPTFTPRPLDNLVQV-DE 417 Query: 1118 YVNLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGI-KGLW 1294 +L PI+D ++ Q+ G S +++R+G+ + E S +L G+ +W Sbjct: 418 MPSLDPILDAKPLNPLAADSPQIFAACGRGARSSFKMLRHGLEVQEAVSSDLPGVPSAVW 477 Query: 1295 SLKSSFSDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLIQ 1474 + K + D YD Y+++SF++ T L +++ GF TL Q D L+Q Sbjct: 478 TTKITQQDEYDSYIILSFVNGT--LVLSIGETIEEVSDSGFLTSSSTLAVQQLGQDALLQ 535 Query: 1475 VTANSVRLVSCTSRELVDQWNAP 1543 V + +R V + +++W P Sbjct: 536 VHPHGIRHVLVDKQ--INEWATP 556
>Q9UTT2:RSE1_SCHPO Pre-mRNA-splicing factor rse1 - Schizosaccharomyces pombe (Fission| yeast) Length = 1206 Score = 77.4 bits (189), Expect = 2e-13 Identities = 110/579 (18%), Positives = 220/579 (37%), Gaps = 78/579 (13%) Frame = +2 Query: 86 STWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIY 259 S + Y +T V SC + +G +++A +R+ I+ + T + +L+ + Sbjct: 6 SLFLYSLTIQNSNYVQSSCAASLSGKKAQEIVIATESRLLIYKVDATDGRMNCILNQNCF 65 Query: 260 GRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQ 439 G I + R +D+L + ++ + +L+++ EK++L+ R G+ Sbjct: 66 GIIRNVAPLRLTGFKRDYLVVTSDSGRITILEYNVEKNKLVPIYQETFGKSGIRRVVPGE 125 Query: 440 IGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLY-----GCLR 604 ID R + + V + + + LE + +I F G Sbjct: 126 YLAIDAKGRAAMIASVEKNKLVYVLNRDSEANLTISSPLEAHKANNICFHLIGLDTGYAN 185 Query: 605 PTIVVLYQDNKDARHVKTYEVALKEK------------DFVEGPWSQNNLDNGAGLLIPV 748 P L D + H T E + + V WS+ +D + +LIPV Sbjct: 186 PIFAALEVDYSEIDHDSTREAFTSSEKVLSYYELDLGLNHVVKRWSKV-VDRNSYMLIPV 244 Query: 749 PAPLXXXXXXXXXXXX---YCNANSTFRAIPIKQ-------SITRAYGRVDPDGSR---- 886 P Y + F IPI + +I+ + +V+ + + Sbjct: 245 PGGNDGPSGTLVISNGWISYRHLQKAFHQIPILRRQAASANAISTPWNQVNSNSANDGPL 304 Query: 887 --------------YLLGDNSGILHLLVLTQERE-RVTGLKIEHLGETSVASSISYLDNG 1021 YLL G L L + + + V L++++ +A ++ L G Sbjct: 305 IVSAVLHKMKGSFFYLLQTGDGDLLKLTIEHDGQGNVVELRLKYFDTVPLAVQLNILKTG 364 Query: 1022 VVYVGSRFSDSQLVKLD-----------------LQPDATGSF-----------VEILER 1117 ++V + F + QL + + Q + G+ + ++E Sbjct: 365 FLFVATEFGNHQLYQFENLGIDDDELEITSLDFQAQDNEVGTKNVHFGVRGLQNLSLVEE 424 Query: 1118 YVNLGPIVDFCVVDLDRQGQG-QVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIK-GL 1291 +L + D ++ G+ Q+ T G + S+R +R G+ E + EL G + Sbjct: 425 IPSLYSLTDTLLMKAPSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELPGAPIAI 484 Query: 1292 WSLKSSFSDLYDMYLVVSFISETRFLAMNMXXXXXXXXXXGFDAQIQTLFCQNAINDLLI 1471 W+LK + +D+YD Y+++SF + T L +++ GF + + TL + D L+ Sbjct: 485 WTLKLNQTDVYDSYIILSFTNGT--LVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLV 542 Query: 1472 QVTANSVRLVSCTSRELVDQWNAPEGFSVNVASANASQV 1588 Q+ +R + + +W P+ V ++ N Q+ Sbjct: 543 QIHPKGIRYIRANKQ--TSEWKLPQDVYVVQSAINDMQI 579
>Q9N4C2:CPSF1_CAEEL Probable cleavage and polyadenylation specificity factor subunit 1 -| Caenorhabditis elegans Length = 1454 Score = 62.4 bits (150), Expect = 7e-09 Identities = 90/399 (22%), Positives = 146/399 (36%), Gaps = 91/399 (22%) Frame = +2 Query: 452 DPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQ-----VLDIKFLYGCLRPTIV 616 DP R +Y ++PF + ++ I L+++ + D+ FL G PTI+ Sbjct: 145 DPSNRCAACLVYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTIL 204 Query: 617 VLYQDNK----------DARHVKTYEVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXX 766 LY+ + D + V + ++ F W NL L+P+P PL Sbjct: 205 FLYEPIQTTPGRACVRYDTMCIMGVSVNIVDRQFAV-VWQTANLPMDCSQLLPIPKPLGG 263 Query: 767 XXXXXXXXXXYCNA---------NST---FRAIPIK-----QSITRAYGRVDPDGSRYLL 895 Y N NS F P+K + V + R + Sbjct: 264 ALVFGSNTVVYLNQAVPPCGLVLNSCYDGFTKFPLKDLKHLKMTLDCSTSVYMEDGRIAV 323 Query: 896 GDNSGILHLLVLTQERE--RVTGLKIEHLGETSVASSISYLDNGVVYVGSRFSDSQLVKL 1069 G G L LL L V L+ + ETS+A S++ G ++VGSR DSQL++ Sbjct: 324 GSRDGDLFLLRLMTSSGGGTVKSLEFSKVYETSIAYSLTVCAPGHLFVGSRLGDSQLLEY 383 Query: 1070 DL---------------QPDATGSFVEI-------------------------------L 1111 L D + +E+ L Sbjct: 384 TLLKTTRDCAVKRLKIDNKDPAAAEIELDEDDMELYGGAIEEQQNDDDEQIDESLQFREL 443 Query: 1112 ERYVNLGPIVDFCV----------VDLDRQGQ-GQVVTCSGAFKDGSIRVVRNGIGINEQ 1258 +R N+GP+ CV VD R+ +VT SG K+G++ V + + Sbjct: 444 DRLRNVGPVKSMCVGRPNYMSNDLVDAKRRDPVFDLVTASGHGKNGALCVHQRSLRPEII 503 Query: 1259 ASVELQGIKGLWSLKSSFSDLYDMYLVVSFISETRFLAM 1375 S L+G + LW++ ++ + YL+VS + T L + Sbjct: 504 TSSLLEGAEQLWAVGRKENESH-KYLIVSRVRSTLILEL 541
>Q7XWP1:CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1 -| Oryza sativa subsp. japonica (Rice) Length = 1441 Score = 50.8 bits (120), Expect = 2e-05 Identities = 72/373 (19%), Positives = 144/373 (38%), Gaps = 101/373 (27%) Frame = +2 Query: 554 LEELQVLDIKFLYGCLRPTIVVLYQDNKD------ARH----VKTYEVA--LKEKDFVEG 697 L+ V D F++G + P +V+L++ ++H + + ++ LK+ + Sbjct: 246 LDMNHVKDFAFVHGYIEPVLVILHEQEPTWAGRILSKHHTCMISAFSISMTLKQHPVI-- 303 Query: 698 PWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQ---------SIT 850 WS NL + A L+ VP P+ Y ++ ST ++ + I+ Sbjct: 304 -WSAANLPHDAYQLLAVPPPISGVLVICANSIHY-HSQSTSCSLDLNNFSSHPDGSPEIS 361 Query: 851 RAYGRVDPDGSR--------YLLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSIS 1006 ++ +V+ D ++ + +G + LL + + V L + + ++S+++ Sbjct: 362 KSNFQVELDAAKATWLSNDIVMFSTKAGEMLLLTVVYDGRVVQRLDLMKSKASVLSSAVT 421 Query: 1007 YLDNGVVYVGSRFSDSQLVKL-----------------------------------DLQP 1081 + N ++GSR DS LV+ D+ Sbjct: 422 SIGNSFFFLGSRLGDSLLVQFSYCASKSVLQDLTNERSADIEGDLPFSKRLKRIPSDVLQ 481 Query: 1082 DATG----SFVEIL----------------ERYVNLGPIVDFC----------VVDLDRQ 1171 D T SF I+ + +N+GP+ DF + +Q Sbjct: 482 DVTSVEELSFQNIIAPNSLESAQKISYIVRDALINVGPLKDFSYGLRANADPNAMGNAKQ 541 Query: 1172 GQGQVVTCSGAFKDGSIRVVRNGIGINEQASVELQGIKGLWSL-------KSSFSDLYDM 1330 ++V CSG K+GS+ V++ I + VEL +G+W++ + + + Y Sbjct: 542 SNYELVCCSGHGKNGSLSVLQQSIRPDLITEVELPSCRGIWTVYYKSYRGQMAEDNEYHA 601 Query: 1331 YLVVSFISETRFL 1369 YL++S + T L Sbjct: 602 YLIISLENRTMVL 614
>Q10426:RIK1_SCHPO Silencing protein rik1 - Schizosaccharomyces pombe (Fission yeast)| Length = 1040 Score = 49.3 bits (116), Expect = 6e-05 Identities = 85/459 (18%), Positives = 174/459 (37%), Gaps = 12/459 (2%) Frame = +2 Query: 176 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVL 352 L++ + +I I+L + GLQ +P++ + I +RP +D+LF+ + + Sbjct: 28 LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87 Query: 353 QWDAEKSELLTRSMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVI-------- 508 WD + +++ V R+ P + D R+ + L +I Sbjct: 88 YWDEDYQKVIV-DHPPVRYRVTFPWNRNAKSYCLVDLRMRAIFLSIDEISMICIRILSAE 146 Query: 509 -PFDNKGQLKEAFNIRLEELQVLDIKFLYGCLRPTIVVLYQDNKDARHVKTYEVALKEKD 685 + F + D+ L PT+VVL+ D D +V + + L K Sbjct: 147 ERLKTGRSIDSGFPFSFPVHLIYDMCILNDSSTPTLVVLHSDGLDC-YVTAFLLDLSSKS 205 Query: 686 FVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGR 865 +G + +++P +C F I + + Sbjct: 206 LGKGIRLFERVK--PSMIMPFG---KRGLLVFESLFIHCMYRGNFVTINGPCTTYMHWTP 260 Query: 866 VDPDGSRYLLGDNSGILHLLVLTQERERVTGLKIEHL--GETSVASSISYLDNGVVYVGS 1039 + Y++ D +G L + + + L +E L +S++ + G++++GS Sbjct: 261 LKGQKMHYIVCDTNGYLFGVYSSILGKNKWSLVMERLPIPPFDFITSLNSIHEGLLFIGS 320 Query: 1040 RFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDFCVVDLDRQGQGQVVTCSGAFKDGS 1219 + S+S+L+ L D ++ NLGPI D V+ D + + C+G ++ S Sbjct: 321 KNSESKLINLSTLKD--------VDSIPNLGPIHDLLVLKNDI--EKSFLVCAGTPRNAS 370 Query: 1220 IRVVRNGIGINEQASVELQGIKGLWSLKSSFSDLYDMYLVVSFISETRFLAMNMXXXXXX 1399 + ++ + ++ ++ GI L S + L + F SET +A N+ Sbjct: 371 LIYFQHALKLDILGQTKISGILRAMVLPS----YPEHKLFLGFPSET--VAFNIKEDFQL 424 Query: 1400 XXXXGFDAQIQTLFCQNAINDLLIQVTANSVRLVSCTSR 1516 + +T+ + N +QVT+ + + R Sbjct: 425 ELDPSLSTKERTI-ALSGTNGEFVQVTSTFLCIYDSAKR 462
>Q9V726:CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1 -| Drosophila melanogaster (Fruit fly) Length = 1455 Score = 49.3 bits (116), Expect = 6e-05 Identities = 84/406 (20%), Positives = 148/406 (36%), Gaps = 80/406 (19%) Frame = +2 Query: 113 HKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-------QGLQP----------- 238 H T+V S F NL+VA ++++ + P Q L P Sbjct: 9 HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRL 68 Query: 239 --MLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDR 412 + +YG + +++ +D L I+ + K VLQ D + L T S+ + Sbjct: 69 ECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSLHYFEED 128 Query: 413 IGRPTDNGQIGI----IDPDCRLIGLHLYDGLFKVIPFDNKGQLKE-------------- 538 R G+ + +DPD R + +Y V+PF L E Sbjct: 129 DIRGGWTGRYFVPTVRVDPDSRCAVMLVYGKRLVVLPFRKDNSLDEIELADVKPIKKAPT 188 Query: 539 ----------AFNIRLEELQ-----VLDIKFLYGCLRPTIVVLYQDNKDA-RHVKT---- 658 ++ I L +L VLDI+FL+G PT+++LY+ + +K Sbjct: 189 AMVSRTPIMASYLIALRDLDEKIDNVLDIQFLHGYYEPTLLILYEPVRTCPGRIKVRSDT 248 Query: 659 ---YEVALKEKDFVEG-PWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRA 826 ++L + V W+ N+L + P+ P+ Y N + Sbjct: 249 CVLVAISLNIQQRVHPIIWTVNSLPFDCLQVYPIQKPIGGCLVMTVNAVIYLNQSVPPYG 308 Query: 827 IPIKQSI--TRAYGRVDPDGSR---------------YLLGDNSGILHLLVLTQERERVT 955 + + S + A+ DG R ++ +G L++L L + R Sbjct: 309 VSLNSSADNSTAFPLKPQDGVRISLDCANFAFIDVDKLVISLRTGDLYVLTLCVDSMRTV 368 Query: 956 GLKIEHLGETSVASS-ISYLDNGVVYVGSRFSDSQLVKLDLQPDAT 1090 H SV +S I L + +++GSR +S L+ + +T Sbjct: 369 RNFHFHKAAASVLTSCICVLHSEYIFLGSRLGNSLLLHFTEEDQST 414 Score = 35.0 bits (79), Expect = 1.2 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 23/159 (14%) Frame = +2 Query: 1103 EILERYVNLGPIVDFCV---VDLDRQG-------------QGQVVTCSGAFKDGSIRVVR 1234 E+ + +N+ PI C V+ + G + ++V +G K+G++ V Sbjct: 485 EVCDSLMNVAPINYMCAGERVEFEEDGVTLRPHAESLQDLKIELVAATGHSKNGALSVFV 544 Query: 1235 NGIGINEQASVELQGIKGLWSL------KSSFSDLYDMYLVVSFISETRFLAMNMXXXXX 1396 N I S EL G +W++ KSS +D +D ++++S + T L + Sbjct: 545 NCINPQIITSFELDGCLDVWTVFDDATKKSSRNDQHD-FMLLSQRNST--LVLQTGQEIN 601 Query: 1397 XXXXXGFDAQIQTLFCQN-AINDLLIQVTANSVRLVSCT 1510 GF T+F N ++QVT VRL+ T Sbjct: 602 EIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVRLLQGT 640
>Q9EPU4:CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 - Mus| musculus (Mouse) Length = 1441 Score = 48.5 bits (114), Expect = 1e-04 Identities = 71/390 (18%), Positives = 150/390 (38%), Gaps = 71/390 (18%) Frame = +2 Query: 110 AHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG------------------LQ 235 AH PT + + NF + NL+VA +++ ++ L L+ Sbjct: 8 AHPPTGLEFTMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDGSTEGKAHREKLE 67 Query: 236 PMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMG-----D 400 + +G + ++ + +D L ++ + K V+++D +L T S+ + Sbjct: 68 LVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127 Query: 401 VSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPF-------DNKGQLKEA------ 541 + D + ++ + DPD R + +Y V+PF +++G + E Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLMGEGQRSSFL 186 Query: 542 ----FNIR-LEE--LQVLDIKFLYGCLRPTIVVLYQDN----------KDARHVKTYEVA 670 ++R L+E L ++D++FL+G PT+++L++ N +D + + Sbjct: 187 PSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLN 246 Query: 671 LKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQ--S 844 + +K WS +L + VP P+ Y N + + + + Sbjct: 247 ITQK-VHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNSLTT 305 Query: 845 ITRAYGRVDPDGSRYLLG----------------DNSGILHLLVLTQERERVTGLKIEHL 976 T A+ +G R L I L ++T V + Sbjct: 306 GTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKA 365 Query: 977 GETSVASSISYLDNGVVYVGSRFSDSQLVK 1066 + + +S+ ++ G +++GSR +S L+K Sbjct: 366 AASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395 Score = 33.1 bits (74), Expect = 4.6 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Frame = +2 Query: 1085 ATGSFVEILERYVNLGPIVDFCVVD---LDRQGQG------QVVTCSGAFKDGSIRVVRN 1237 AT SF E+ + +N+GP + V + L + Q ++V CSG K+G++ V++ Sbjct: 458 ATYSF-EVCDSMLNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGYGKNGALSVLQK 516 Query: 1238 GIGINEQASVELQGIKGLWSL 1300 I + EL G +W++ Sbjct: 517 SIRPQVVTTFELPGCYDMWTV 537
>Q10570:CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 - Homo| sapiens (Human) Length = 1443 Score = 48.1 bits (113), Expect = 1e-04 Identities = 71/390 (18%), Positives = 146/390 (37%), Gaps = 71/390 (18%) Frame = +2 Query: 110 AHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG------------------LQ 235 AH PT + S NF + NL+VA +++ ++ L L+ Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67 Query: 236 PMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMG-----D 400 +G + ++ + +D L ++ + K V+++D +L T S+ + Sbjct: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPE 127 Query: 401 VSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE-------------- 538 + D + ++ + DPD R + +Y V+PF + +E Sbjct: 128 LRDGFVQNVHTPRVRV-DPDGRCAAMLVYGTRLVVLPFRRESLAEEHEGLVGEGQRSSFL 186 Query: 539 ---AFNIR-LEE--LQVLDIKFLYGCLRPTIVVLYQDN----------KDARHVKTYEVA 670 ++R L+E L ++D++FL+G PT+++L++ N +D + + Sbjct: 187 PSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAISLN 246 Query: 671 LKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQ--S 844 + +K WS +L + VP P+ Y N + + + + Sbjct: 247 ITQK-VHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTT 305 Query: 845 ITRAYGRVDPDGSRYLLG----------------DNSGILHLLVLTQERERVTGLKIEHL 976 T A+ +G R L I L ++T V + Sbjct: 306 GTTAFPLRTQEGVRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKA 365 Query: 977 GETSVASSISYLDNGVVYVGSRFSDSQLVK 1066 + + +S+ ++ G +++GSR +S L+K Sbjct: 366 AASVLTTSMVTMEPGYLFLGSRLGNSLLLK 395 Score = 33.1 bits (74), Expect = 4.6 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Frame = +2 Query: 1085 ATGSFVEILERYVNLGPIVDFCVVD---LDRQGQG------QVVTCSGAFKDGSIRVVRN 1237 AT SF E+ + +N+GP + V + L + Q ++V CSG K+G++ V++ Sbjct: 459 ATYSF-EVCDSILNIGPCANAAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQK 517 Query: 1238 GIGINEQASVELQGIKGLWSL 1300 I + EL G +W++ Sbjct: 518 SIRPQVVTTFELPGCYDMWTV 538
>Q10569:CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 - Bos| taurus (Bovine) Length = 1444 Score = 47.8 bits (112), Expect = 2e-04 Identities = 71/393 (18%), Positives = 146/393 (37%), Gaps = 74/393 (18%) Frame = +2 Query: 110 AHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQP----------------- 238 AH PT + S NF + NL+VA +++ ++ L P Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDSEAPTKNDRSTDGKAHREHRE 67 Query: 239 ----MLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMG--- 397 + +G + ++ + +D L ++ + K V+++D +L T S+ Sbjct: 68 KLELVASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFE 127 Query: 398 --DVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKE----------- 538 ++ D + ++ + DPD R + +Y V+PF + +E Sbjct: 128 EPELRDGFVQNVHTPRVRV-DPDGRCAAMLIYGTRLVVLPFRRESLAEEHEGLVGEGQRS 186 Query: 539 ------AFNIR-LEE--LQVLDIKFLYGCLRPTIVVLYQDN----------KDARHVKTY 661 ++R L+E L ++D++FL+G PT+++L++ N +D + Sbjct: 187 SFLPSYIIDVRALDEKLLNIVDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSIVAI 246 Query: 662 EVALKEKDFVEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQ 841 + + +K WS +L + VP P+ Y N + + + Sbjct: 247 SLNITQK-VHPVIWSLTSLPFDCTQALAVPKPIGGVVIFAVNSLLYLNQSVPPYGVALNS 305 Query: 842 --SITRAYGRVDPDGSRYLLG----------------DNSGILHLLVLTQERERVTGLKI 967 + T A+ +G R L I L ++T V Sbjct: 306 LTTGTTAFPLRTQEGVRITLDCAQAAFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHF 365 Query: 968 EHLGETSVASSISYLDNGVVYVGSRFSDSQLVK 1066 + + + +S+ ++ G +++GSR +S L+K Sbjct: 366 DKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLK 398
>Q9FGR0:CPSF1_ARATH Probable cleavage and polyadenylation specificity factor subunit 1 -| Arabidopsis thaliana (Mouse-ear cress) Length = 1448 Score = 46.6 bits (109), Expect = 4e-04 Identities = 51/211 (24%), Positives = 80/211 (37%), Gaps = 27/211 (12%) Frame = +2 Query: 545 NIR-LEELQVLDIKFLYGCLRPTIVVLYQDNKD-------ARHVKTYEVALKEKDFVEGP 700 N+R LE V D FL+G + P IV+L ++ H + P Sbjct: 240 NLRDLEMKHVKDFVFLHGYIEPVIVILQEEEHTWAGRVSWKHHTCVLSALSINSTLKQHP 299 Query: 701 --WSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQSITRAYGRVDP 874 WS NL + A L+ VP+P+ Y ++ S A+ + + A + Sbjct: 300 VIWSAINLPHDAYKLLAVPSPIGGVLVLCANTIHY-HSQSASCALALNNYASSADSSQEL 358 Query: 875 DGSRY-----------------LLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSI 1003 S + LL SG L LL L + V L + + +AS I Sbjct: 359 PASNFSVELDAAHGTWISNDVALLSTKSGELLLLTLIYDGRAVQRLDLSKSKASVLASDI 418 Query: 1004 SYLDNGVVYVGSRFSDSQLVKLDLQPDATGS 1096 + + N + ++GSR DS LV+ + S Sbjct: 419 TSVGNSLFFLGSRLGDSLLVQFSCRSGPAAS 449 Score = 46.2 bits (108), Expect = 5e-04 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 24/112 (21%) Frame = +2 Query: 1106 ILERYVNLGPIVDFC----------VVDLDRQGQGQVVTCSGAFKDGSIRVVRNGIGINE 1255 + + VN+GP+ DF + +Q ++V CSG K+G++ V+R I Sbjct: 513 VRDSLVNVGPVKDFAYGLRINADANATGVSKQSNYELVCCSGHGKNGALCVLRQSIRPEM 572 Query: 1256 QASVELQGIKGLWSL--KSS------------FSDLYDMYLVVSFISETRFL 1369 VEL G KG+W++ KSS D Y YL++S + T L Sbjct: 573 ITEVELPGCKGIWTVYHKSSRGHNADSSKMAADEDEYHAYLIISLEARTMVL 624
>Q6C740:CFT1_YARLI Protein CFT1 - Yarrowia lipolytica (Candida lipolytica)| Length = 1269 Score = 46.6 bits (109), Expect = 4e-04 Identities = 86/392 (21%), Positives = 155/392 (39%), Gaps = 75/392 (19%) Frame = +2 Query: 116 KPTSVSHSCVGNFTGPHQLNLIVAKCTRI-----------------EIHLLTPQGLQPML 244 +PT+V+HS NFTG + NL++ K +++ + L+T + L Sbjct: 9 EPTAVTHSLSCNFTG--ERNLVLVKGSQLLQIFRYKDDIPTKDEAPRLELIT----EYYL 62 Query: 245 DVPIYG--RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM-----GDV 403 D + G RI TI+ N D L+I+ + K ++ W+A + T+S+ G V Sbjct: 63 DGTVTGVTRIKTID-----NYDLDSLYISVKHAKAVIVAWNASSFTIDTKSLHYYEKGLV 117 Query: 404 SDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKG----QLKEA-------FNI 550 P + + + L + +P KG ++ E+ F + Sbjct: 118 ESNFFEPECSSVAVSDEANSFYTCLLFQNDRMAFLPIIEKGLDDDEMPESGQVFDPSFIV 177 Query: 551 RLEELQ-----VLDIKFLYGCLRPTIVVLYQDN----------KDARHVKTYEVALKEKD 685 + L V+DI FL+ T+ +L+Q KD V + +K+ Sbjct: 178 KASRLDKRIENVMDICFLHEYRETTMGILFQPKRAWVGMKNILKDTVSYAIVSVDVHQKN 237 Query: 686 F-VEGPWSQNNLDNGAGLLIPVPAPLXXXXXXXXXXXXYCNANSTFRAIPIKQS------ 844 V G + N L A +IP+PAPL Y ++++++ + + + Sbjct: 238 STVIG--TLNGLPVDAQKVIPLPAPLGGSLIICANTILYIDSSASYTGVMVNNTHRQNSD 295 Query: 845 --ITRAYGRVDPD------------GSRYLLGDNSGILHLLVLTQERERVTGLKIEHLGE 982 ++R +D G+ LL G L+ ++ RV L++ + Sbjct: 296 LIVSRDQSTLDLRLEGAEVCFIQELGNTALLVTEDGQFFSLLFNKDGRRVASLELRPIEP 355 Query: 983 T----SVASSISYLDNGVVYVGSRFSDSQLVK 1066 S SS++ +G +++GSR DS LVK Sbjct: 356 DNFILSQPSSVAAGPDGTIFLGSRAGDSLLVK 387
>O74733:CFT1_SCHPO Protein cft1 - Schizosaccharomyces pombe (Fission yeast)| Length = 1441 Score = 43.5 bits (101), Expect = 0.003 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 28/160 (17%) Frame = +2 Query: 230 LQPMLDVPIYGRIATIELFRPH-NEAQDFLFIATERYKFCVLQWDAEKSELLTRSMG--- 397 L+ + V ++G I I + + D L + T+ K L+WD + +T S+ Sbjct: 92 LRLVSQVKVFGTITEISALKGKGSNGCDLLIMLTDYAKVSTLEWDMQSQSFVTNSLHYYE 151 Query: 398 DV-SDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQL-------------- 532 DV S I Q+ ++DPD L + +IP+ L Sbjct: 152 DVKSSNICSSHTPTQL-LVDPDSDCCLLRFLTDMMAIIPYPANEDLDMEEAAIENSKISS 210 Query: 533 ----KEAFNIRLEEL-----QVLDIKFLYGCLRPTIVVLY 625 K +F + +L ++LD+KFLYG PT+ +LY Sbjct: 211 SYAYKPSFVLASSQLDASISRILDVKFLYGYREPTLAILY 250
>Q6BHK3:CFT1_DEBHA Protein CFT1 - Debaryomyces hansenii (Yeast) (Torulaspora hansenii)| Length = 1342 Score = 38.5 bits (88), Expect = 0.11 Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 54/224 (24%) Frame = +2 Query: 116 KPTSVSHSCVG-NFTGPHQLNLIVAKCTRIEI-HLLTPQ------GLQPMLDVPIYGRIA 271 +PT VS C+G NF P +LIV K T +++ ++T + L+ + ++G I Sbjct: 9 QPTRVSQ-CIGCNFISPTSKSLIVGKATVLQVFEIITTETKTQQYKLKLVEQFKLHGLIT 67 Query: 272 TIELFRPHNEAQ-DFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNGQIG- 445 I+ R Q D+L ++++ K +++WD + + T S+ + I T Sbjct: 68 DIKAIRTVENLQLDYLLVSSKGAKMSLIKWDHHLNSISTVSLHYYENSIQSSTYEKLTTT 127 Query: 446 --IIDPDCRLIGLHLYDGLFKVIPF----------------------DNKGQLKEAFNIR 553 +++P+ L + L +PF D K KE N Sbjct: 128 DLVVEPNNNCTCLR-FKNLLTFLPFETLDEEEEDDDDDEEMNGSSGSDKKATNKENGNSN 186 Query: 554 LEEL--------------------QVLDIKFLYGCLRPTIVVLY 625 EE+ ++D++FLY PTI +++ Sbjct: 187 GEEVSELFESSFMIDGRTLDSRIGDIIDMQFLYNYREPTIAIIF 230
>Q8TFG9:YL61_SCHPO Uncharacterized serine/threonine-rich protein PB15E9.01c precursor| - Schizosaccharomyces pombe (Fission yeast) Length = 943 Score = 36.6 bits (83), Expect = 0.42 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 8/103 (7%) Frame = +3 Query: 246 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQKNQSFSLDPWEMFLIASAAL 425 T Y + +SSS+LT SSSL TSS+S + + N + S P L +S+A Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSAT 115 Query: 426 --------RTMDRLGSSTLTVDLLAFTSMMGCLRLYHSTTKDS 530 T L SS++T LA +S+ STT S Sbjct: 116 SSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSS 158
>Q6FSD2:CFT1_CANGA Protein CFT1 - Candida glabrata (Yeast) (Torulopsis glabrata)| Length = 1361 Score = 36.6 bits (83), Expect = 0.42 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 8/111 (7%) Frame = +2 Query: 119 PTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG-LQPMLDVPIYGRIATIELFRPH 295 PT VSHS G+FT L LIV + + I+ G L M + + GRI + L H Sbjct: 10 PTVVSHSVCGHFTTTDYLELIVIRTDVLSIYKPIRSGRLYLMEEHKLSGRINDVALIPKH 69 Query: 296 NEAQD-------FLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPT 427 + + +L ++T K +L ++ S + T S+ D+ T Sbjct: 70 SNGSNGNGINLSYLLLSTGVAKLSLLMYNNMTSSIETISLHFYEDKFESAT 120
>Q5AFT3:CFT1_CANAL Protein CFT1 - Candida albicans (Yeast)| Length = 1420 Score = 35.8 bits (81), Expect = 0.71 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 13/100 (13%) Frame = +2 Query: 134 HSCVG-NFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIY-----------GRIATI 277 ++CVG NF + NLIV K + ++I T Q Q ++ P Y G I + Sbjct: 14 NNCVGCNFISSTKKNLIVGKGSLLQI-FETIQLKQSTINKPQYRLKLIDQFKLQGTITDL 72 Query: 278 ELFRP-HNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM 394 + R N D+L ++T+ KF +++WD + + T S+ Sbjct: 73 KSIRTIENPNLDYLMVSTKYAKFSIIKWDHHLNTIATVSL 112
>P32323:AGA1_YEAST A-agglutinin anchorage subunit precursor - Saccharomyces cerevisiae| (Baker's yeast) Length = 725 Score = 35.4 bits (80), Expect = 0.93 Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Frame = -1 Query: 1269 STEACSLIPIPLRTTRMEPSLNAPEQVTT*PCP-CLSRSTTQKSTIGPRFTYRSRISTNE 1093 STE CS P +T +L+ + T+ CP C + + + S +G S S E Sbjct: 102 STEVCSHEACPSSSTLPTTTLSVTSKFTSYICPTCHTTAISSLSEVGTTTVVSS--SAIE 159 Query: 1092 PVASGWRSSFTS--CESLNREPT*TTPLSRYDIDDATEVSPKCSIFKP--VTLSRSWVRT 925 P ++ S TS + + PT TT LS +T SP + P + S S T Sbjct: 160 PSSASIISPVTSTLSSTTSSNPT-TTSLS------STSTSPSSTSTSPSSTSTSSSSTST 212 Query: 924 SKCKMPELSPSK*REPSGSTLP*ALVMDCLIGIALNVELALQ*TIVSSPIIMTPPSGAGT 745 S S S PS ++ +L + + + T SS T PS T Sbjct: 213 SSSSTSTSSSSTSTSPSSTSTSSSLTSTS----SSSTSTSQSSTSTSSSSTSTSPSSTST 268 Query: 744 GIK--RPAPLSKLFCDQGPSTKSFSFSATSYVLTCLASLLS 628 +P SK ST S+S S + + + +L S Sbjct: 269 SSSSTSTSPSSKSTSASSTSTSSYSTSTSPSLTSSSPTLAS 309
>Q9Y5J1:UTP18_HUMAN U3 small nucleolar RNA-associated protein 18 homolog - Homo sapiens| (Human) Length = 556 Score = 35.0 bits (79), Expect = 1.2 Identities = 34/121 (28%), Positives = 55/121 (45%) Frame = +2 Query: 833 IKQSITRAYGRVDPDGSRYLLGDNSGILHLLVLTQERERVTGLKIEHLGETSVASSISYL 1012 +K+ I R++ V PDGS L+ +G LHLL + + +E + +KI VA+S Sbjct: 339 LKEKIVRSF-EVSPDGSFLLINGIAGYLHLLAM-KTKELIGSMKI----NGRVAASTFSS 392 Query: 1013 DNGVVYVGSRFSDSQLVKLDLQPDATGSFVEILERYVNLGPIVDFCVVDLDRQGQGQVVT 1192 D+ VY S D ++ D+ + L R+V+ G + + GQ V Sbjct: 393 DSKKVYASS--GDGEVYVWDVNSR------KCLNRFVDEGSLYGLSIA---TSRNGQYVA 441 Query: 1193 C 1195 C Sbjct: 442 C 442
>O75072:FCMD_HUMAN Fukutin - Homo sapiens (Human)| Length = 461 Score = 33.5 bits (75), Expect = 3.5 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%) Frame = -3 Query: 514 EWYNLKQPIIEVKANKSTVRVDDPN-LSIVRRAADAIRNISHGSSEKL*FFCVP 356 +W +K+ I+ V + DP L ++ + + ++N SHGS+ + FFCVP Sbjct: 54 QWRAVKKFIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVP 107
>Q6CTT2:CFT1_KLULA Protein CFT1 - Kluyveromyces lactis (Yeast) (Candida sphaerica)| Length = 1300 Score = 33.1 bits (74), Expect = 4.6 Identities = 43/206 (20%), Positives = 82/206 (39%), Gaps = 35/206 (16%) Frame = +2 Query: 116 KPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLT-PQGLQPMLDVPIYGRIATIELFRP 292 +PT V+ GNFT + +VA+ + + ++ Q L + + G+I ++L Sbjct: 9 QPTVVNKCLHGNFTSAEREEYVVARTNVLSVFRVSRAQKLVLAYEWKLAGKIIDMQLLPQ 68 Query: 293 HNEAQDFLFIATERYKFCVLQWDAEKSELLTRSMGDVSDRIGRPTDNG----QIGIIDPD 460 L I + + K ++++D L T S+ D+ + + I +DP Sbjct: 69 IGSPLKMLAILSSKSKVSLVRFDPVAESLETLSLHYYHDKFVNLSTSSLKTESIMAVDPL 128 Query: 461 CRLIGLHLYDGLFKVIPF----------DNKGQLKEAFNIRLEELQ-------------- 568 R + L + + ++P +++ +KE RL+ Q Sbjct: 129 FRCL-LVFNEDVLAILPLKLNTEDMEIDEDENGIKEPMAKRLKRNQGITSDSIIMPISSL 187 Query: 569 ------VLDIKFLYGCLRPTIVVLYQ 628 V DIK+L +PT+ +LYQ Sbjct: 188 HKSLKHVYDIKWLNNFSKPTVGILYQ 213
>Q75EY8:CFT1_ASHGO Protein CFT1 - Ashbya gossypii (Yeast) (Eremothecium gossypii)| Length = 1305 Score = 32.7 bits (73), Expect = 6.0 Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 1/105 (0%) Frame = +2 Query: 83 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQG-LQPMLDVPIY 259 M+ ++ V+ A T V++S G+FT + LI+ + + + +G L + + Sbjct: 1 MNVFDEVINA---TVVNNSVTGHFTTTLREELIITRTNLLSVLHKDNEGRLVLAYEWKLS 57 Query: 260 GRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEKSELLTRSM 394 GR+ + L PH L + T R + ++++DAE L T S+ Sbjct: 58 GRVHGLSLV-PHKSGLGRLAVLTGRGRVSIVRFDAENQTLETESL 101 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 339,071,051 Number of extensions: 7558312 Number of successful extensions: 19433 Number of sequences better than 10.0: 43 Number of HSP's gapped: 19249 Number of HSP's successfully gapped: 56 Length of query: 692 Length of database: 100,686,439 Length adjustment: 120 Effective length of query: 572 Effective length of database: 67,771,039 Effective search space: 38765034308 Effective search space used: 38765034308 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
