ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf65o01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001063030.1| Oryza sativa (japonica cultivar-group) Os05g0592400 (Os05g0592400) mRNA, complete cds Length = 3790 Score = 1723 bits (869), Expect = 0.0 Identities = 1340/1497 (89%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 124 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 183 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 210 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 184 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 243 Query: 211 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 270 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 244 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 303 Query: 271 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 330 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 304 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 363 Query: 331 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 390 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 364 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 423 Query: 391 catgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcat 450 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 424 gatgggagatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcat 483 Query: 451 cgaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacc 510 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct: 484 cgaccctgactgtagacttattggtcttcacctctacgatggattatttaaggttatacc 543 Query: 511 attcgacaacaaaggacagctgaaggaagctttcaatatcagactagaagagcttcaagt 570 || || |||||||| |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 544 gtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaacttcaagt 603 Query: 571 gttggacataaagttcctgtatggctgtctcagacctacgatagttgtcctctaccagga 630 |||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||| Sbjct: 604 attggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctctaccagga 663 Query: 631 taacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatttcgt 690 |||||||||||| || |||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 664 taacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaagactttgt 723 Query: 691 cgagggcccttggtcacagaacaatttagacaatggagctggtcttttaatacctgtacc 750 ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 724 tgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaatacctgtacc 783 Query: 751 agctccactcggcggtgtcataattattggtgaggagacaatagtttactgcaatgctaa 810 |||||| || || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 784 agctcctcttggtggtgtcataattattggtgaggagacaatagtttactgcaatgccaa 843 Query: 811 ttctacatttagagctataccaatcaaacagtccatcacaagagcttacggaagggttga 870 |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| Sbjct: 844 ctctacatttagagctataccaatcaaacagtcaatcataagagcttacggacgggttga 903 Query: 871 cccagatggctctcgctatttacttggtgataattcaggcattttgcatttacttgtcct 930 |||||| || || ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 904 cccagacggttcgcgctatttacttggtgataatgcaggcatattgcatttacttgtcct 963 Query: 931 tacccaggaacgagaaagggtaactggtttgaaaattgagcatttgggagagacttcagt 990 |||||| |||||||| |||||||| ||| ||||||| ||| | ||||||||||||||| | Sbjct: 964 tacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagagacttcaat 1023 Query: 991 tgcatcgtcaatatcgtatcttgataatggtgttgtctatgttggttctcgatttagtga 1050 |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| Sbjct: 1024 tgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcgatttggtga 1083 Query: 1051 ttcacagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatcct 1110 ||||||||| ||||| || |||||||| |||| ||| |||||||| || ||| | || Sbjct: 1084 ttcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttct 1143 Query: 1111 tgaacggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggca 1170 ||| || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 1144 tgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggca 1203 Query: 1171 agggcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggt 1230 || || |||||||| |||||||||||||||||||| |||||||||||| |||| ||||| Sbjct: 1204 gggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggt 1263 Query: 1231 tcgtaatggtatagggattaatgagcaggcttcagtagagctgcaaggcatcaagggatt 1290 ||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||| || Sbjct: 1264 tcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatcaagggttt 1323 Query: 1291 atggtcactgaagtcttccttcagtgacctgtatgacatgtatctggtggtgagctttat 1350 |||||| |||| |||||||||| ||| | |||||||||||| || || ||||||||||| Sbjct: 1324 atggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtgagctttat 1383 Query: 1351 aagcgagactaggttcttggctatgaacatggaagatgaattagaagaaattgagataga 1410 ||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 1384 aagcgagacaagattcttggctatgaacatggaagatgagttagaagaaactgagataga 1443 Query: 1411 agggtttgatgcacaaattcagactttgttctgccaaaatgccatcaatgatctgcttat 1470 ||| |||||||| || | |||||||||||| || |||||||||||||||||||||||||| Sbjct: 1444 aggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgatctgcttat 1503 Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 1504 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 1563 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1620
>dbj|AK067427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107E16, full insert sequence Length = 4136 Score = 1723 bits (869), Expect = 0.0 Identities = 1340/1497 (89%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 46 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 105 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 210 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 106 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 165 Query: 211 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 270 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 166 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 225 Query: 271 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 330 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 226 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 285 Query: 331 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 390 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 286 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 345 Query: 391 catgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcat 450 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 346 gatgggagatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcat 405 Query: 451 cgaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacc 510 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct: 406 cgaccctgactgtagacttattggtcttcacctctacgatggattatttaaggttatacc 465 Query: 511 attcgacaacaaaggacagctgaaggaagctttcaatatcagactagaagagcttcaagt 570 || || |||||||| |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 466 gtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaacttcaagt 525 Query: 571 gttggacataaagttcctgtatggctgtctcagacctacgatagttgtcctctaccagga 630 |||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||| Sbjct: 526 attggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctctaccagga 585 Query: 631 taacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatttcgt 690 |||||||||||| || |||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 586 taacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaagactttgt 645 Query: 691 cgagggcccttggtcacagaacaatttagacaatggagctggtcttttaatacctgtacc 750 ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 646 tgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaatacctgtacc 705 Query: 751 agctccactcggcggtgtcataattattggtgaggagacaatagtttactgcaatgctaa 810 |||||| || || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 706 agctcctcttggtggtgtcataattattggtgaggagacaatagtttactgcaatgccaa 765 Query: 811 ttctacatttagagctataccaatcaaacagtccatcacaagagcttacggaagggttga 870 |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| Sbjct: 766 ctctacatttagagctataccaatcaaacagtcaatcataagagcttacggacgggttga 825 Query: 871 cccagatggctctcgctatttacttggtgataattcaggcattttgcatttacttgtcct 930 |||||| || || ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 826 cccagacggttcgcgctatttacttggtgataatgcaggcatattgcatttacttgtcct 885 Query: 931 tacccaggaacgagaaagggtaactggtttgaaaattgagcatttgggagagacttcagt 990 |||||| |||||||| |||||||| ||| ||||||| ||| | ||||||||||||||| | Sbjct: 886 tacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagagacttcaat 945 Query: 991 tgcatcgtcaatatcgtatcttgataatggtgttgtctatgttggttctcgatttagtga 1050 |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| Sbjct: 946 tgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcgatttggtga 1005 Query: 1051 ttcacagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatcct 1110 ||||||||| ||||| || |||||||| |||| ||| |||||||| || ||| | || Sbjct: 1006 ttcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttct 1065 Query: 1111 tgaacggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggca 1170 ||| || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 1066 tgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggca 1125 Query: 1171 agggcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggt 1230 || || |||||||| |||||||||||||||||||| |||||||||||| |||| ||||| Sbjct: 1126 gggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggt 1185 Query: 1231 tcgtaatggtatagggattaatgagcaggcttcagtagagctgcaaggcatcaagggatt 1290 ||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||| || Sbjct: 1186 tcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatcaagggttt 1245 Query: 1291 atggtcactgaagtcttccttcagtgacctgtatgacatgtatctggtggtgagctttat 1350 |||||| |||| |||||||||| ||| | |||||||||||| || || ||||||||||| Sbjct: 1246 atggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtgagctttat 1305 Query: 1351 aagcgagactaggttcttggctatgaacatggaagatgaattagaagaaattgagataga 1410 ||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 1306 aagcgagacaagattcttggctatgaacatggaagatgagttagaagaaactgagataga 1365 Query: 1411 agggtttgatgcacaaattcagactttgttctgccaaaatgccatcaatgatctgcttat 1470 ||| |||||||| || | |||||||||||| || |||||||||||||||||||||||||| Sbjct: 1366 aggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgatctgcttat 1425 Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 1426 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 1485 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1486 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1542
>dbj|AK065508.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026I01, full insert sequence Length = 3792 Score = 1723 bits (869), Expect = 0.0 Identities = 1340/1497 (89%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 125 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 184 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 210 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 185 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 244 Query: 211 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 270 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 245 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 304 Query: 271 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 330 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 305 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 364 Query: 331 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 390 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 365 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 424 Query: 391 catgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcat 450 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 425 gatgggagatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcat 484 Query: 451 cgaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacc 510 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct: 485 cgaccctgactgtagacttattggtcttcacctctacgatggattatttaaggttatacc 544 Query: 511 attcgacaacaaaggacagctgaaggaagctttcaatatcagactagaagagcttcaagt 570 || || |||||||| |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 545 gtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaacttcaagt 604 Query: 571 gttggacataaagttcctgtatggctgtctcagacctacgatagttgtcctctaccagga 630 |||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||| Sbjct: 605 attggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctctaccagga 664 Query: 631 taacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatttcgt 690 |||||||||||| || |||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 665 taacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaagactttgt 724 Query: 691 cgagggcccttggtcacagaacaatttagacaatggagctggtcttttaatacctgtacc 750 ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 725 tgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaatacctgtacc 784 Query: 751 agctccactcggcggtgtcataattattggtgaggagacaatagtttactgcaatgctaa 810 |||||| || || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 785 agctcctcttggtggtgtcataattattggtgaggagacaatagtttactgcaatgccaa 844 Query: 811 ttctacatttagagctataccaatcaaacagtccatcacaagagcttacggaagggttga 870 |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| Sbjct: 845 ctctacatttagagctataccaatcaaacagtcaatcataagagcttacggacgggttga 904 Query: 871 cccagatggctctcgctatttacttggtgataattcaggcattttgcatttacttgtcct 930 |||||| || || ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 905 cccagacggttcgcgctatttacttggtgataatgcaggcatattgcatttacttgtcct 964 Query: 931 tacccaggaacgagaaagggtaactggtttgaaaattgagcatttgggagagacttcagt 990 |||||| |||||||| |||||||| ||| ||||||| ||| | ||||||||||||||| | Sbjct: 965 tacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagagacttcaat 1024 Query: 991 tgcatcgtcaatatcgtatcttgataatggtgttgtctatgttggttctcgatttagtga 1050 |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| Sbjct: 1025 tgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcgatttggtga 1084 Query: 1051 ttcacagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatcct 1110 ||||||||| ||||| || |||||||| |||| ||| |||||||| || ||| | || Sbjct: 1085 ttcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttct 1144 Query: 1111 tgaacggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggca 1170 ||| || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 1145 tgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggca 1204 Query: 1171 agggcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggt 1230 || || |||||||| |||||||||||||||||||| |||||||||||| |||| ||||| Sbjct: 1205 gggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggt 1264 Query: 1231 tcgtaatggtatagggattaatgagcaggcttcagtagagctgcaaggcatcaagggatt 1290 ||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||| || Sbjct: 1265 tcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatcaagggttt 1324 Query: 1291 atggtcactgaagtcttccttcagtgacctgtatgacatgtatctggtggtgagctttat 1350 |||||| |||| |||||||||| ||| | |||||||||||| || || ||||||||||| Sbjct: 1325 atggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtgagctttat 1384 Query: 1351 aagcgagactaggttcttggctatgaacatggaagatgaattagaagaaattgagataga 1410 ||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 1385 aagcgagacaagattcttggctatgaacatggaagatgagttagaagaaactgagataga 1444 Query: 1411 agggtttgatgcacaaattcagactttgttctgccaaaatgccatcaatgatctgcttat 1470 ||| |||||||| || | |||||||||||| || |||||||||||||||||||||||||| Sbjct: 1445 aggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgatctgcttat 1504 Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 1505 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 1564 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1565 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1621
>dbj|AB037144.1| Oryza sativa (japonica cultivar-group) OsUV-DDB mRNA for UV-damaged DNA binding protein, complete cds Length = 3658 Score = 1723 bits (869), Expect = 0.0 Identities = 1340/1497 (89%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 125 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 184 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatcgagatcca 210 ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 185 cttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatcgagatcca 244 Query: 211 cctcctcacgccgcagggcctccagccgatgctggacgtgcccatatatgggaggatcgc 270 | | || || || || ||||||||||| ||| | || || || || ||||| || ||||| Sbjct: 245 cttgcttactcctcaaggcctccagcctatgattgatgtacctatctatggaagaatcgc 304 Query: 271 gacgatcgagctcttccgccctcacaatgaggcccaggacttcctcttcattgccacgga 330 || | ||||||||||||||||| |||||| | ||||||||||| |||||||| || || Sbjct: 305 cacactagagctcttccgccctcataatgagactcaggacttccttttcattgcgactga 364 Query: 331 gaggtacaagttctgcgtcctgcagtgggacgcagaaaaatcagagcttctcactagatc 390 || ||||| ||||| || ||||||||||| | ||||||||| ||||||||||||||| | Sbjct: 365 aagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctcactagagc 424 Query: 391 catgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcat 450 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 425 gatgggagatgtttctgatcgcattggtcgccctacggacaatggacagattgggatcat 484 Query: 451 cgaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacc 510 |||||||||||||||||||||||| ||||||||||| ||||| || |||||||||||||| Sbjct: 485 cgaccctgactgtagacttattggtcttcacctctacgatggattatttaaggttatacc 544 Query: 511 attcgacaacaaaggacagctgaaggaagctttcaatatcagactagaagagcttcaagt 570 || || |||||||| |||||||||||||||||||||||||| || ||||| |||||||| Sbjct: 545 gtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaacttcaagt 604 Query: 571 gttggacataaagttcctgtatggctgtctcagacctacgatagttgtcctctaccagga 630 |||||||| |||||||||||||||||| | | |||||| |||||||||||||||||||| Sbjct: 605 attggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctctaccagga 664 Query: 631 taacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatttcgt 690 |||||||||||| || |||||||||||||||||||||||| ||||||| ||||| || || Sbjct: 665 taacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaagactttgt 724 Query: 691 cgagggcccttggtcacagaacaatttagacaatggagctggtcttttaatacctgtacc 750 ||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||| Sbjct: 725 tgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaatacctgtacc 784 Query: 751 agctccactcggcggtgtcataattattggtgaggagacaatagtttactgcaatgctaa 810 |||||| || || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 785 agctcctcttggtggtgtcataattattggtgaggagacaatagtttactgcaatgccaa 844 Query: 811 ttctacatttagagctataccaatcaaacagtccatcacaagagcttacggaagggttga 870 |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| Sbjct: 845 ctctacatttagagctataccaatcaaacagtcaatcataagagcttacggacgggttga 904 Query: 871 cccagatggctctcgctatttacttggtgataattcaggcattttgcatttacttgtcct 930 |||||| || || ||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct: 905 cccagacggttcgcgctatttacttggtgataatgcaggcatattgcatttacttgtcct 964 Query: 931 tacccaggaacgagaaagggtaactggtttgaaaattgagcatttgggagagacttcagt 990 |||||| |||||||| |||||||| ||| ||||||| ||| | ||||||||||||||| | Sbjct: 965 tacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagagacttcaat 1024 Query: 991 tgcatcgtcaatatcgtatcttgataatggtgttgtctatgttggttctcgatttagtga 1050 |||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||| |||| Sbjct: 1025 tgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcgatttggtga 1084 Query: 1051 ttcacagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatcct 1110 ||||||||| ||||| || |||||||| |||| ||| |||||||| || ||| | || Sbjct: 1085 ttcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttct 1144 Query: 1111 tgaacggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggca 1170 ||| || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| Sbjct: 1145 tgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggca 1204 Query: 1171 agggcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggt 1230 || || |||||||| |||||||||||||||||||| |||||||||||| |||| ||||| Sbjct: 1205 gggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggt 1264 Query: 1231 tcgtaatggtatagggattaatgagcaggcttcagtagagctgcaaggcatcaagggatt 1290 ||| ||||| ||||| || |||||||||||||||||||| || ||||| |||||||| || Sbjct: 1265 tcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatcaagggttt 1324 Query: 1291 atggtcactgaagtcttccttcagtgacctgtatgacatgtatctggtggtgagctttat 1350 |||||| |||| |||||||||| ||| | |||||||||||| || || ||||||||||| Sbjct: 1325 atggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtgagctttat 1384 Query: 1351 aagcgagactaggttcttggctatgaacatggaagatgaattagaagaaattgagataga 1410 ||||||||| || |||||||||||||||||||||||||| |||||||||| ||||||||| Sbjct: 1385 aagcgagacaagattcttggctatgaacatggaagatgagttagaagaaactgagataga 1444 Query: 1411 agggtttgatgcacaaattcagactttgttctgccaaaatgccatcaatgatctgcttat 1470 ||| |||||||| || | |||||||||||| || |||||||||||||||||||||||||| Sbjct: 1445 aggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgatctgcttat 1504 Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 1505 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 1564 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1565 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1621
>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08, complete sequence Length = 142196 Score = 307 bits (155), Expect = 9e-80 Identities = 203/219 (92%) Strand = Plus / Plus Query: 623 taccaggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaa 682 |||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||| Sbjct: 73095 taccaggataacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaa 73154 Query: 683 gatttcgtcgagggcccttggtcacagaacaatttagacaatggagctggtcttttaata 742 || || || ||||| |||||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 73155 gactttgttgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaata 73214 Query: 743 cctgtaccagctccactcggcggtgtcataattattggtgaggagacaatagtttactgc 802 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 73215 cctgtaccagctcctcttggtggtgtcataattattggtgaggagacaatagtttactgc 73274 Query: 803 aatgctaattctacatttagagctataccaatcaaacag 841 ||||| || |||||||||||||||||||||||||||||| Sbjct: 73275 aatgccaactctacatttagagctataccaatcaaacag 73313 Score = 254 bits (128), Expect = 1e-63 Identities = 197/220 (89%) Strand = Plus / Plus Query: 1257 aggcttcagtagagctgcaaggcatcaagggattatggtcactgaagtcttccttcagtg 1316 ||||||||||||| || ||||| |||||||| |||||||| |||| |||||||||| || Sbjct: 74428 aggcttcagtagaactacaagggatcaagggtttatggtcgttgaaatcttccttcaatg 74487 Query: 1317 acctgtatgacatgtatctggtggtgagctttataagcgagactaggttcttggctatga 1376 | | |||||||||||| || || |||||||||||||||||||| || ||||||||||||| Sbjct: 74488 atccgtatgacatgtacctagttgtgagctttataagcgagacaagattcttggctatga 74547 Query: 1377 acatggaagatgaattagaagaaattgagatagaagggtttgatgcacaaattcagactt 1436 ||||||||||||| |||||||||| |||||||||||| |||||||| || | |||||||| Sbjct: 74548 acatggaagatgagttagaagaaactgagatagaaggctttgatgcgcagactcagactt 74607 Query: 1437 tgttctgccaaaatgccatcaatgatctgcttatacaggt 1476 |||| || |||||||||||||||||||||||||||||||| Sbjct: 74608 tgttttgtcaaaatgccatcaatgatctgcttatacaggt 74647 Score = 176 bits (89), Expect = 2e-40 Identities = 95/97 (97%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 70347 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 70406 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcg 187 ||||||||||||| ||||||||||||||||||||||| Sbjct: 70407 cttcaccggccccaaccagctcaacctcatcgtcgcg 70443 Score = 163 bits (82), Expect = 3e-36 Identities = 175/206 (84%) Strand = Plus / Plus Query: 1054 acagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatccttga 1113 |||||| ||||| || |||||||| |||| ||| |||||||| || ||| | ||||| Sbjct: 74142 acagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttcttga 74201 Query: 1114 acggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggcaagg 1173 || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| || Sbjct: 74202 gcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggcaggg 74261 Query: 1174 gcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggttcg 1233 || |||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| Sbjct: 74262 tcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggttcg 74321 Query: 1234 taatggtatagggattaatgagcagg 1259 ||||| ||||| || |||||||||| Sbjct: 74322 gaatgggataggtatcaatgagcagg 74347 Score = 161 bits (81), Expect = 1e-35 Identities = 108/117 (92%) Strand = Plus / Plus Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 74940 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 74999 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75000 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 75056 Score = 143 bits (72), Expect = 3e-30 Identities = 99/108 (91%) Strand = Plus / Plus Query: 838 acagtccatcacaagagcttacggaagggttgacccagatggctctcgctatttacttgg 897 |||||| |||| ||||||||||||| ||||||||||||| || || |||||||||||||| Sbjct: 73416 acagtcaatcataagagcttacggacgggttgacccagacggttcgcgctatttacttgg 73475 Query: 898 tgataattcaggcattttgcatttacttgtccttacccaggaacgaga 945 ||||||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 73476 tgataatgcaggcatattgcatttacttgtccttacccatgaacgaga 73523 Score = 135 bits (68), Expect = 7e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 946 aagggtaactggtttgaaaattgagcatttgggagagacttcagttgcatcgtcaatatc 1005 ||||||||| ||| ||||||| ||| | ||||||||||||||| ||||||| |||||||| Sbjct: 73620 aagggtaaccggtctgaaaatcgagtacttgggagagacttcaattgcatcatcaatatc 73679 Query: 1006 gtatcttgataatggtgttgtctatgttggttctcgatttagtgattcacag 1057 ||||| ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 73680 atatctcgataatggtgttgtctacgttggttctcgatttggtgattcacag 73731 Score = 101 bits (51), Expect = 1e-17 Identities = 63/67 (94%) Strand = Plus / Plus Query: 438 agattgggatcatcgaccctgactgtagacttattggccttcacctctatgatgggttgt 497 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || | Sbjct: 71864 agattgggatcatcgaccctgactgtagacttattggtcttcacctctacgatggattat 71923 Query: 498 ttaaggt 504 ||||||| Sbjct: 71924 ttaaggt 71930 Score = 89.7 bits (45), Expect = 4e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 557 gaagagcttcaagtgttggacataaagttcctgtatggctgtctcagacctacgatagtt 616 ||||| |||||||| |||||||| |||||||||||||||||| | | |||||| |||||| Sbjct: 72602 gaagaacttcaagtattggacatcaagttcctgtatggctgtgttaaacctactatagtt 72661 Query: 617 gtcctctaccagg 629 ||||||||||||| Sbjct: 72662 gtcctctaccagg 72674 Score = 79.8 bits (40), Expect = 4e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 296 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 355 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 71070 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 71129 Query: 356 tgggacgcagaaaaatcagagcttctcactag 387 ||||| | ||||||||| |||||||||||||| Sbjct: 71130 tgggatggagaaaaatcggagcttctcactag 71161 Score = 79.8 bits (40), Expect = 4e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacag 439 ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 71678 atgggagatgtttctgatcgcattggtcgccctacggacaatggacag 71725 Score = 71.9 bits (36), Expect = 9e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 |||||||||| || || |||||||| |||||||||||||||||||||||||| Sbjct: 72037 aggttataccgtttgataacaaagggcagctgaaggaagctttcaatatcag 72088 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 gaaatgcacccgcatcgagatccac 211 |||||||||||| |||||||||||| Sbjct: 70773 gaaatgcacccgtatcgagatccac 70797
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 307 bits (155), Expect = 9e-80 Identities = 203/219 (92%) Strand = Plus / Plus Query: 623 taccaggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaa 682 |||||||||||||||||||| || |||||||||||||||||||||||| ||||||| ||| Sbjct: 29294438 taccaggataacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaa 29294497 Query: 683 gatttcgtcgagggcccttggtcacagaacaatttagacaatggagctggtcttttaata 742 || || || ||||| |||||||| |||||||||||||||||||| |||||||| |||||| Sbjct: 29294498 gactttgttgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaata 29294557 Query: 743 cctgtaccagctccactcggcggtgtcataattattggtgaggagacaatagtttactgc 802 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 29294558 cctgtaccagctcctcttggtggtgtcataattattggtgaggagacaatagtttactgc 29294617 Query: 803 aatgctaattctacatttagagctataccaatcaaacag 841 ||||| || |||||||||||||||||||||||||||||| Sbjct: 29294618 aatgccaactctacatttagagctataccaatcaaacag 29294656 Score = 254 bits (128), Expect = 1e-63 Identities = 197/220 (89%) Strand = Plus / Plus Query: 1257 aggcttcagtagagctgcaaggcatcaagggattatggtcactgaagtcttccttcagtg 1316 ||||||||||||| || ||||| |||||||| |||||||| |||| |||||||||| || Sbjct: 29295771 aggcttcagtagaactacaagggatcaagggtttatggtcgttgaaatcttccttcaatg 29295830 Query: 1317 acctgtatgacatgtatctggtggtgagctttataagcgagactaggttcttggctatga 1376 | | |||||||||||| || || |||||||||||||||||||| || ||||||||||||| Sbjct: 29295831 atccgtatgacatgtacctagttgtgagctttataagcgagacaagattcttggctatga 29295890 Query: 1377 acatggaagatgaattagaagaaattgagatagaagggtttgatgcacaaattcagactt 1436 ||||||||||||| |||||||||| |||||||||||| |||||||| || | |||||||| Sbjct: 29295891 acatggaagatgagttagaagaaactgagatagaaggctttgatgcgcagactcagactt 29295950 Query: 1437 tgttctgccaaaatgccatcaatgatctgcttatacaggt 1476 |||| || |||||||||||||||||||||||||||||||| Sbjct: 29295951 tgttttgtcaaaatgccatcaatgatctgcttatacaggt 29295990 Score = 176 bits (89), Expect = 2e-40 Identities = 95/97 (97%) Strand = Plus / Plus Query: 91 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaa 150 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 29291690 gtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgcgtcggcaa 29291749 Query: 151 cttcaccggcccccaccagctcaacctcatcgtcgcg 187 ||||||||||||| ||||||||||||||||||||||| Sbjct: 29291750 cttcaccggccccaaccagctcaacctcatcgtcgcg 29291786 Score = 163 bits (82), Expect = 3e-36 Identities = 175/206 (84%) Strand = Plus / Plus Query: 1054 acagctggtaaagctggatctccaacctgatgcaactggttcattcgtcgaaatccttga 1113 |||||| ||||| || |||||||| |||| ||| |||||||| || ||| | ||||| Sbjct: 29295485 acagcttgtaaaactaaatctccaagctgacccaaatggttcatatgttgaagttcttga 29295544 Query: 1114 acggtatgtgaatcttggacctattgtggacttctgcgtggttgaccttgataggcaagg 1173 || |||||||| |||||||| || ||||||||||| |||||||||||||| ||||| || Sbjct: 29295545 gcgatatgtgaaccttggacccatcgtggacttctgtgtggttgaccttgacaggcaggg 29295604 Query: 1174 gcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggttcg 1233 || |||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| Sbjct: 29295605 tcagggtcaggttgtcacttgttcaggagcatttaaagatggttcccttcgggtggttcg 29295664 Query: 1234 taatggtatagggattaatgagcagg 1259 ||||| ||||| || |||||||||| Sbjct: 29295665 gaatgggataggtatcaatgagcagg 29295690 Score = 161 bits (81), Expect = 1e-35 Identities = 108/117 (92%) Strand = Plus / Plus Query: 1471 acaggttaccgctaattctgtccggttagtcagttgcacttctcgggagctagtggatca 1530 ||||||||| ||||||||||| || | || ||||| || |||||||||||||||||||| Sbjct: 29296283 acaggttactgctaattctgttcgtctggttagttgtacctctcgggagctagtggatca 29296342 Query: 1531 atggaatgcaccggaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 1587 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29296343 atggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagtcaggt 29296399 Score = 143 bits (72), Expect = 3e-30 Identities = 99/108 (91%) Strand = Plus / Plus Query: 838 acagtccatcacaagagcttacggaagggttgacccagatggctctcgctatttacttgg 897 |||||| |||| ||||||||||||| ||||||||||||| || || |||||||||||||| Sbjct: 29294759 acagtcaatcataagagcttacggacgggttgacccagacggttcgcgctatttacttgg 29294818 Query: 898 tgataattcaggcattttgcatttacttgtccttacccaggaacgaga 945 ||||||| ||||||| ||||||||||||||||||||||| |||||||| Sbjct: 29294819 tgataatgcaggcatattgcatttacttgtccttacccatgaacgaga 29294866 Score = 135 bits (68), Expect = 7e-28 Identities = 101/112 (90%) Strand = Plus / Plus Query: 946 aagggtaactggtttgaaaattgagcatttgggagagacttcagttgcatcgtcaatatc 1005 ||||||||| ||| ||||||| ||| | ||||||||||||||| ||||||| |||||||| Sbjct: 29294963 aagggtaaccggtctgaaaatcgagtacttgggagagacttcaattgcatcatcaatatc 29295022 Query: 1006 gtatcttgataatggtgttgtctatgttggttctcgatttagtgattcacag 1057 ||||| ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 29295023 atatctcgataatggtgttgtctacgttggttctcgatttggtgattcacag 29295074 Score = 101 bits (51), Expect = 1e-17 Identities = 63/67 (94%) Strand = Plus / Plus Query: 438 agattgggatcatcgaccctgactgtagacttattggccttcacctctatgatgggttgt 497 ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || | Sbjct: 29293207 agattgggatcatcgaccctgactgtagacttattggtcttcacctctacgatggattat 29293266 Query: 498 ttaaggt 504 ||||||| Sbjct: 29293267 ttaaggt 29293273 Score = 89.7 bits (45), Expect = 4e-14 Identities = 66/73 (90%) Strand = Plus / Plus Query: 557 gaagagcttcaagtgttggacataaagttcctgtatggctgtctcagacctacgatagtt 616 ||||| |||||||| |||||||| |||||||||||||||||| | | |||||| |||||| Sbjct: 29293945 gaagaacttcaagtattggacatcaagttcctgtatggctgtgttaaacctactatagtt 29294004 Query: 617 gtcctctaccagg 629 ||||||||||||| Sbjct: 29294005 gtcctctaccagg 29294017 Score = 79.8 bits (40), Expect = 4e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 296 aatgaggcccaggacttcctcttcattgccacggagaggtacaagttctgcgtcctgcag 355 |||||| | ||||||||||| |||||||| || || || ||||| ||||| || |||||| Sbjct: 29292413 aatgagactcaggacttccttttcattgcgactgaaagatacaaattctgtgttctgcag 29292472 Query: 356 tgggacgcagaaaaatcagagcttctcactag 387 ||||| | ||||||||| |||||||||||||| Sbjct: 29292473 tgggatggagaaaaatcggagcttctcactag 29292504 Score = 79.8 bits (40), Expect = 4e-11 Identities = 46/48 (95%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacag 439 ||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 29293021 atgggagatgtttctgatcgcattggtcgccctacggacaatggacag 29293068 Score = 71.9 bits (36), Expect = 9e-09 Identities = 48/52 (92%) Strand = Plus / Plus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 |||||||||| || || |||||||| |||||||||||||||||||||||||| Sbjct: 29293380 aggttataccgtttgataacaaagggcagctgaaggaagctttcaatatcag 29293431 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 187 gaaatgcacccgcatcgagatccac 211 |||||||||||| |||||||||||| Sbjct: 29292116 gaaatgcacccgtatcgagatccac 29292140
>gb|AY105594.1| Zea mays PCO079062 mRNA sequence Length = 754 Score = 238 bits (120), Expect = 7e-59 Identities = 189/212 (89%) Strand = Plus / Plus Query: 1376 aacatggaagatgaattagaagaaattgagatagaagggtttgatgcacaaattcagact 1435 ||||||||||||||| ||||||| | ||||||||| |||||||||||||||| ||| ||| Sbjct: 1 aacatggaagatgaactagaagagactgagatagaggggtttgatgcacaaactcaaact 60 Query: 1436 ttgttctgccaaaatgccatcaatgatctgcttatacaggttaccgctaattctgtccgg 1495 |||| || || ||||| ||||||||||| |||||||||||||| ||||||||||| ||| Sbjct: 61 ctgttttgtcagaatgcgatcaatgatcttcttatacaggttactgctaattctgttcgg 120 Query: 1496 ttagtcagttgcacttctcgggagctagtggatcaatggaatgcaccggaaggattttca 1555 |||||||||||||| || |||||| ||||| |||||||||||||||| | |||||| ||| Sbjct: 121 ttagtcagttgcacctcccgggagttagtgaatcaatggaatgcaccagcaggattctca 180 Query: 1556 gtcaatgttgcatcagctaatgccagtcaggt 1587 ||||||||||| |||||||||||||| ||||| Sbjct: 181 gtcaatgttgcttcagctaatgccagccaggt 212
>ref|NM_116781.2| Arabidopsis thaliana DDB1A; DNA binding / nucleic acid binding (DDB1A) mRNA, complete cds Length = 3714 Score = 101 bits (51), Expect = 1e-17 Identities = 237/299 (79%) Strand = Plus / Plus Query: 962 aaaattgagcatttgggagagacttcagttgcatcgtcaatatcgtatcttgataatggt 1021 |||||||||| |||||| || || || |||||||| | |||||||| ||||| |||| Sbjct: 1044 aaaattgagcttttgggtgaaacatctattgcatcgactatatcgtaccttgacaatgcc 1103 Query: 1022 gttgtctatgttggttctcgatttagtgattcacagctggtaaagctggatctccaacct 1081 ||||||| ||| || || | | | ||||||||||||| ||||||||| |||| || ||| Sbjct: 1104 gttgtctttgtcggctcaagctatggtgattcacagctagtaaagctgaatctacaccct 1163 Query: 1082 gatgcaactggttcattcgtcgaaatccttgaacggtatgtgaatcttggacctattgtg 1141 ||||||| || |||| || ||| || | ||| ||||| | || | || |||||||| Sbjct: 1164 gatgcaaaaggctcatatgtagaagtcttggaaaggtatatcaacttggggcctattgtc 1223 Query: 1142 gacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcacttgttcagga 1201 ||||| || || |||||||| || || || |||||||||||||| || |||||||| ||| Sbjct: 1224 gacttttgtgtagttgacctcgagagacaggggcaaggtcaggttgtaacttgttctgga 1283 Query: 1202 gcattcaaagatggttccattcgagtggttcgtaatggtatagggattaatgagcaggc 1260 ||||| || ||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct: 1284 gcatttaaggatggttccctccgcgtagttcgcaatggaataggaatcaatgaacaggc 1342 Score = 89.7 bits (45), Expect = 4e-14 Identities = 132/161 (81%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 477 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattggtataatt 536 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || || || |||||| | ||||| || || || ||||| || ||||| |||||||| ||| Sbjct: 537 gatccagattgtagattaattggactccatctgtatgacggcttgttcaaggttattcca 596 Query: 512 ttcgacaacaaaggacagctgaaggaagctttcaatatcag 552 || || || || |||||||| ||||||||||| |||||||| Sbjct: 597 tttgataataagggacagctcaaggaagcttttaatatcag 637 Score = 71.9 bits (36), Expect = 9e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 83 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 142 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 168 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 227 Query: 143 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 202 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 228 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 287 Query: 203 gagatcca 210 |||||||| Sbjct: 288 gagatcca 295 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || ||||||||||| | || || || || ||| Sbjct: 711 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataaggat 770 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || |||||||| || ||||| ||||||| | | |||||||| |||| Sbjct: 771 tttgtcgagggtccatggtctcagaacagtctcgacaatggtgctg 816
>gb|AY074258.1| Arabidopsis thaliana At4g05420 mRNA sequence Length = 1988 Score = 101 bits (51), Expect = 1e-17 Identities = 237/299 (79%) Strand = Plus / Plus Query: 962 aaaattgagcatttgggagagacttcagttgcatcgtcaatatcgtatcttgataatggt 1021 |||||||||| |||||| || || || |||||||| | |||||||| ||||| |||| Sbjct: 999 aaaattgagcttttgggtgaaacatctattgcatcgactatatcgtaccttgacaatgcc 1058 Query: 1022 gttgtctatgttggttctcgatttagtgattcacagctggtaaagctggatctccaacct 1081 ||||||| ||| || || | | | ||||||||||||| ||||||||| |||| || ||| Sbjct: 1059 gttgtctttgtcggctcaagctatggtgattcacagctagtaaagctgaatctacaccct 1118 Query: 1082 gatgcaactggttcattcgtcgaaatccttgaacggtatgtgaatcttggacctattgtg 1141 ||||||| || |||| || ||| || | ||| ||||| | || | || |||||||| Sbjct: 1119 gatgcaaaaggctcatatgtagaagtcttggaaaggtatatcaacttggggcctattgtc 1178 Query: 1142 gacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcacttgttcagga 1201 ||||| || || |||||||| || || || |||||||||||||| || |||||||| ||| Sbjct: 1179 gacttttgtgtagttgacctcgagagacaggggcaaggtcaggttgtaacttgttctgga 1238 Query: 1202 gcattcaaagatggttccattcgagtggttcgtaatggtatagggattaatgagcaggc 1260 ||||| || ||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct: 1239 gcatttaaggatggttccctccgcgtagttcgcaatggaataggaatcaatgaacaggc 1297 Score = 89.7 bits (45), Expect = 4e-14 Identities = 132/161 (81%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 432 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattggtataatt 491 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || || || |||||| | ||||| || || || ||||| || ||||| |||||||| ||| Sbjct: 492 gatccagattgtagattaattggactccatctgtatgacggcttgttcaaggttattcca 551 Query: 512 ttcgacaacaaaggacagctgaaggaagctttcaatatcag 552 || || || || |||||||| ||||||||||| |||||||| Sbjct: 552 tttgataataagggacagctcaaggaagcttttaatatcag 592 Score = 71.9 bits (36), Expect = 9e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 83 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 142 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 123 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 182 Query: 143 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 202 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 183 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 242 Query: 203 gagatcca 210 |||||||| Sbjct: 243 gagatcca 250 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || ||||||||||| | || || || || ||| Sbjct: 666 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataaggat 725 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || |||||||| || ||||| ||||||| | | |||||||| |||| Sbjct: 726 tttgtcgagggtccatggtctcagaacagtctcgacaatggtgctg 771
>gb|BT001905.1| Arabidopsis thaliana clone C104978 putative UV-damaged DNA binding factor (At4g05420) mRNA, complete cds Length = 3298 Score = 101 bits (51), Expect = 1e-17 Identities = 237/299 (79%) Strand = Plus / Plus Query: 962 aaaattgagcatttgggagagacttcagttgcatcgtcaatatcgtatcttgataatggt 1021 |||||||||| |||||| || || || |||||||| | |||||||| ||||| |||| Sbjct: 877 aaaattgagcttttgggtgaaacatctattgcatcgactatatcgtaccttgacaatgcc 936 Query: 1022 gttgtctatgttggttctcgatttagtgattcacagctggtaaagctggatctccaacct 1081 ||||||| ||| || || | | | ||||||||||||| ||||||||| |||| || ||| Sbjct: 937 gttgtctttgtcggctcaagctatggtgattcacagctagtaaagctgaatctacaccct 996 Query: 1082 gatgcaactggttcattcgtcgaaatccttgaacggtatgtgaatcttggacctattgtg 1141 ||||||| || |||| || ||| || | ||| ||||| | || | || |||||||| Sbjct: 997 gatgcaaaaggctcatatgtagaagtcttggaaaggtatatcaacttggggcctattgtc 1056 Query: 1142 gacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcacttgttcagga 1201 ||||| || || |||||||| || || || |||||||||||||| || |||||||| ||| Sbjct: 1057 gacttttgtgtagttgacctcgagagacaggggcaaggtcaggttgtaacttgttctgga 1116 Query: 1202 gcattcaaagatggttccattcgagtggttcgtaatggtatagggattaatgagcaggc 1260 ||||| || ||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct: 1117 gcatttaaggatggttccctccgcgtagttcgcaatggaataggaatcaatgaacaggc 1175 Score = 89.7 bits (45), Expect = 4e-14 Identities = 132/161 (81%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 310 atgggggatgtttctgatcgtataggccggccaacagacaatggtcagattggtataatt 369 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || || || |||||| | ||||| || || || ||||| || ||||| |||||||| ||| Sbjct: 370 gatccagattgtagattaattggactccatctgtatgacggcttgttcaaggttattcca 429 Query: 512 ttcgacaacaaaggacagctgaaggaagctttcaatatcag 552 || || || || |||||||| ||||||||||| |||||||| Sbjct: 430 tttgataataagggacagctcaaggaagcttttaatatcag 470 Score = 71.9 bits (36), Expect = 9e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 83 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 142 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 1 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 60 Query: 143 gtcggcaacttcaccggcccccaccagctcaacctcatcgtcgcgaaatgcacccgcatc 202 || ||||||||||| | || || ||||||| ||||| ||||||||||| || || ||| Sbjct: 61 gttggcaacttcacaagtcctcaagagctcaatctcattgtcgcgaaatgtactcgaatc 120 Query: 203 gagatcca 210 |||||||| Sbjct: 121 gagatcca 128 Score = 44.1 bits (22), Expect = 2.0 Identities = 85/106 (80%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || ||||||||||| | || || || || ||| Sbjct: 544 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataaggat 603 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || |||||||| || ||||| ||||||| | | |||||||| |||| Sbjct: 604 tttgtcgagggtccatggtctcagaacagtctcgacaatggtgctg 649
>gb|AC161106.13| Medicago truncatula clone mth2-168f23, complete sequence Length = 94766 Score = 95.6 bits (48), Expect = 6e-16 Identities = 78/88 (88%) Strand = Plus / Minus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 |||||||||||||||||| | |||||||| |||||||| ||||| |||||||| |||||| Sbjct: 6270 caggataacaaagatgcccgtcatgttaaaacatatgaggttgctctgaaggataaagat 6211 Query: 686 ttcgtcgagggcccttggtcacagaaca 713 || || |||||||| |||||||| |||| Sbjct: 6210 tttgttgagggcccatggtcacaaaaca 6183 Score = 87.7 bits (44), Expect = 1e-13 Identities = 104/124 (83%) Strand = Plus / Minus Query: 1136 attgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcacttgt 1195 ||||| |||||||| ||||| |||||||| |||||||| ||||||||||| || ||||| Sbjct: 4619 attgttgacttctgtgtggtagaccttgaaaggcaaggccaaggtcaggttgtgacttgc 4560 Query: 1196 tcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaatgag 1255 || ||||| | ||| ||||||||| | || || ||||||||||| ||||| || ||||| Sbjct: 4559 tctggagcttacaaggatggttccctacgcgttgttcgtaatggaataggtatcaatgaa 4500 Query: 1256 cagg 1259 |||| Sbjct: 4499 cagg 4496 Score = 48.1 bits (24), Expect = 0.13 Identities = 45/52 (86%) Strand = Plus / Minus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 ||||||| || || ||||| |||||||| || ||||||||||| |||||||| Sbjct: 8459 aggttattccctttgacaataaaggacaactcaaggaagcttttaatatcag 8408 Score = 44.1 bits (22), Expect = 2.0 Identities = 55/66 (83%) Strand = Plus / Minus Query: 92 tggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggcaac 151 ||||||||||| || || || ||||| || |||| ||| | ||||||||||||||||| Sbjct: 10693 tggaactacgttgttaccgctcacaaacctaccaacgttactcactcctgcgtcggcaat 10634 Query: 152 ttcacc 157 |||||| Sbjct: 10633 ttcacc 10628
>dbj|AK229805.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like, complete cds, clone: RAFL21-85-P03 Length = 3543 Score = 89.7 bits (45), Expect = 4e-14 Identities = 123/149 (82%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 421 atgggggatgtttctgatcgtataggccgaccgacagacaatggtcagattggtataatt 480 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || ||||| || ||| | ||||| || || || ||||| || ||||||||||| || ||| Sbjct: 481 gatcctgattgcagagtaattggtctgcatctgtatgacggcttgtttaaggtcattcca 540 Query: 512 ttcgacaacaaaggacagctgaaggaagc 540 || ||||| ||||||||||| |||||||| Sbjct: 541 tttgacaataaaggacagctcaaggaagc 569 Score = 71.9 bits (36), Expect = 9e-09 Identities = 123/152 (80%) Strand = Plus / Plus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| || || || || ||||||||||| || || |||||||||||||| || ||| Sbjct: 1159 cctattgtcgatttttgtgtagttgaccttgagagacaggggcaaggtcaggttgtaact 1218 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 || || ||||||| ||| |||||||| |||| | ||||| ||||| ||||| || ||| Sbjct: 1219 tgctctggagcatacaaggatggttctcttcgcatagttcgcaatgggataggaataaat 1278 Query: 1253 gagcaggcttcagtagagctgcaaggcatcaa 1284 || ||||| || || || || ||||||||||| Sbjct: 1279 gaacaggcgtccgtggaacttcaaggcatcaa 1310 Score = 52.0 bits (26), Expect = 0.008 Identities = 86/106 (81%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || |||||||||||| | || ||||| || | Sbjct: 655 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataagaac 714 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || ||||| || || ||||||||||||||| | |||||||| |||| Sbjct: 715 tttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctg 760
>ref|NM_118228.2| Arabidopsis thaliana DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) (DDB1B) mRNA, complete cds Length = 3390 Score = 89.7 bits (45), Expect = 4e-14 Identities = 123/149 (82%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 310 atgggggatgtttctgatcgtataggccgaccgacagacaatggtcagattggtataatt 369 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || ||||| || ||| | ||||| || || || ||||| || ||||||||||| || ||| Sbjct: 370 gatcctgattgcagagtaattggtctgcatctgtatgacggcttgtttaaggtcattcca 429 Query: 512 ttcgacaacaaaggacagctgaaggaagc 540 || ||||| ||||||||||| |||||||| Sbjct: 430 tttgacaataaaggacagctcaaggaagc 458 Score = 71.9 bits (36), Expect = 9e-09 Identities = 123/152 (80%) Strand = Plus / Plus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| || || || || ||||||||||| || || |||||||||||||| || ||| Sbjct: 1048 cctattgtcgatttttgtgtagttgaccttgagagacaggggcaaggtcaggttgtaact 1107 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 || || ||||||| ||| |||||||| |||| | ||||| ||||| ||||| || ||| Sbjct: 1108 tgctctggagcatacaaggatggttctcttcgcatagttcgcaatgggataggaataaat 1167 Query: 1253 gagcaggcttcagtagagctgcaaggcatcaa 1284 || ||||| || || || || ||||||||||| Sbjct: 1168 gaacaggcgtccgtggaacttcaaggcatcaa 1199 Score = 52.0 bits (26), Expect = 0.008 Identities = 86/106 (81%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || |||||||||||| | || ||||| || | Sbjct: 544 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataagaac 603 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || ||||| || || ||||||||||||||| | |||||||| |||| Sbjct: 604 tttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctg 649
>dbj|AK220648.1| Arabidopsis thaliana mRNA for UV-damaged DNA-binding protein-like, complete cds, clone: RAFL21-64-B09 Length = 3586 Score = 89.7 bits (45), Expect = 4e-14 Identities = 123/149 (82%) Strand = Plus / Plus Query: 392 atgggagatgtttctgatcgcatcggccgccctacggacaatggacagattgggatcatc 451 ||||| |||||||||||||| || ||||| || || |||||||| |||||||| || || Sbjct: 464 atgggggatgtttctgatcgtataggccgaccgacagacaatggtcagattggtataatt 523 Query: 452 gaccctgactgtagacttattggccttcacctctatgatgggttgtttaaggttatacca 511 || ||||| || ||| | ||||| || || || ||||| || ||||||||||| || ||| Sbjct: 524 gatcctgattgcagagtaattggtctgcatctgtatgacggcttgtttaaggtcattcca 583 Query: 512 ttcgacaacaaaggacagctgaaggaagc 540 || ||||| ||||||||||| |||||||| Sbjct: 584 tttgacaataaaggacagctcaaggaagc 612 Score = 71.9 bits (36), Expect = 9e-09 Identities = 123/152 (80%) Strand = Plus / Plus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| || || || || ||||||||||| || || |||||||||||||| || ||| Sbjct: 1202 cctattgtcgatttttgtgtagttgaccttgagagacaggggcaaggtcaggttgtaact 1261 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 || || ||||||| ||| |||||||| |||| | ||||| ||||| ||||| || ||| Sbjct: 1262 tgctctggagcatacaaggatggttctcttcgcatagttcgcaatgggataggaataaat 1321 Query: 1253 gagcaggcttcagtagagctgcaaggcatcaa 1284 || ||||| || || || || ||||||||||| Sbjct: 1322 gaacaggcgtccgtggaacttcaaggcatcaa 1353 Score = 52.0 bits (26), Expect = 0.008 Identities = 86/106 (81%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || |||||||||||| | || ||||| || | Sbjct: 698 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataagaac 757 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || ||||| || || ||||||||||||||| | |||||||| |||| Sbjct: 758 tttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctg 803
>gb|AY452480.1| Lycopersicon esculentum UV damaged DNA binding protein 1 (DDB1) mRNA, complete cds Length = 3273 Score = 85.7 bits (43), Expect = 6e-13 Identities = 136/167 (81%) Strand = Plus / Plus Query: 497 tttaaggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcagacta 556 ||||||||||| ||||| || |||||||| || |||||||||||||| || ||||| || Sbjct: 415 tttaaggttattccatttgataacaaaggccaactgaaggaagcttttaacatcaggctc 474 Query: 557 gaagagcttcaagtgttggacataaagttcctgtatggctgtctcagacctacgatagtt 616 || ||||||||||| || || || || ||| ||||||| || | | ||||| || ||| Sbjct: 475 gaggagcttcaagttttagatattaaattcttgtatggttgcccaaagcctacaattgtt 534 Query: 617 gtcctctaccaggataacaaagatgccaggcatgttaagacatatga 663 || || || ||||||||||| |||||| ||||||| || |||||||| Sbjct: 535 gttctatatcaggataacaaggatgcccggcatgtcaaaacatatga 581 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Plus Query: 1130 ggacctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtc 1189 |||||||||||||||||||| || ||||| || || |||||||| ||||||||||| || Sbjct: 1045 ggacctattgtggacttctgtgttgttgatctggaaaggcaaggtcaaggtcaggttgta 1104 Query: 1190 acttgttcaggagc 1203 ||||| || ||||| Sbjct: 1105 acttgctctggagc 1118 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 gtgcccatatatgggaggatcgcgac 273 ||||| |||||||||||||||||||| Sbjct: 166 gtgccaatatatgggaggatcgcgac 191
>gb|AY531660.1| Lycopersicon esculentum UV-damaged DNA binding protein 1 (hp1) mRNA, complete cds Length = 3454 Score = 85.7 bits (43), Expect = 6e-13 Identities = 136/167 (81%) Strand = Plus / Plus Query: 497 tttaaggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcagacta 556 ||||||||||| ||||| || |||||||| || |||||||||||||| || ||||| || Sbjct: 467 tttaaggttattccatttgataacaaaggccaactgaaggaagcttttaacatcaggctc 526 Query: 557 gaagagcttcaagtgttggacataaagttcctgtatggctgtctcagacctacgatagtt 616 || ||||||||||| || || || || ||| ||||||| || | | ||||| || ||| Sbjct: 527 gaggagcttcaagttttagatattaaattcttgtatggttgcccaaagcctacaattgtt 586 Query: 617 gtcctctaccaggataacaaagatgccaggcatgttaagacatatga 663 || || || ||||||||||| |||||| ||||||| || |||||||| Sbjct: 587 gttctatatcaggataacaaggatgcccggcatgtcaaaacatatga 633 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Plus Query: 1130 ggacctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtc 1189 |||||||||||||||||||| || ||||| || || |||||||| ||||||||||| || Sbjct: 1097 ggacctattgtggacttctgtgttgttgatctggaaaggcaaggtcaaggtcaggttgta 1156 Query: 1190 acttgttcaggagc 1203 ||||| || ||||| Sbjct: 1157 acttgctctggagc 1170 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 gtgcccatatatgggaggatcgcgac 273 ||||| |||||||||||||||||||| Sbjct: 218 gtgccaatatatgggaggatcgcgac 243
>emb|AL161503.2|ATCHRIV15 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 15 Length = 199987 Score = 77.8 bits (39), Expect = 1e-10 Identities = 105/127 (82%) Strand = Plus / Plus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| ||||| || || |||||||| || || || |||||||||||||| || ||| Sbjct: 88133 cctattgtcgacttttgtgtagttgacctcgagagacaggggcaaggtcaggttgtaact 88192 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 ||||| |||||||| || ||||||||| | || || ||||| ||||| ||||| || ||| Sbjct: 88193 tgttctggagcatttaaggatggttccctccgcgtagttcgcaatggaataggaatcaat 88252 Query: 1253 gagcagg 1259 || |||| Sbjct: 88253 gaacagg 88259 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Plus Query: 83 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 142 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 84740 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 84799 Query: 143 gtcggcaacttcac 156 || ||||||||||| Sbjct: 84800 gttggcaacttcac 84813 Score = 48.1 bits (24), Expect = 0.13 Identities = 45/52 (86%) Strand = Plus / Plus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 ||||||| ||||| || || || |||||||| ||||||||||| |||||||| Sbjct: 86561 aggttattccatttgataataagggacagctcaaggaagcttttaatatcag 86612 Score = 42.1 bits (21), Expect = 7.9 Identities = 84/105 (80%) Strand = Plus / Plus Query: 627 aggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatt 686 |||| ||||||||||| | ||||| || ||||||||||| | || || || || |||| Sbjct: 87147 aggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataaggatt 87206 Query: 687 tcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 | |||||||| || ||||| ||||||| | | |||||||| |||| Sbjct: 87207 ttgtcgagggtccatggtctcagaacagtctcgacaatggtgctg 87251
>gb|AC012477.1|AC012477 Genomic Sequence For Arabidopsis thaliana Clone C6L9, Chromosome IV, complete sequence Length = 145453 Score = 77.8 bits (39), Expect = 1e-10 Identities = 105/127 (82%) Strand = Plus / Minus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| ||||| || || |||||||| || || || |||||||||||||| || ||| Sbjct: 27161 cctattgtcgacttttgtgtagttgacctcgagagacaggggcaaggtcaggttgtaact 27102 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 ||||| |||||||| || ||||||||| | || || ||||| ||||| ||||| || ||| Sbjct: 27101 tgttctggagcatttaaggatggttccctccgcgtagttcgcaatggaataggaatcaat 27042 Query: 1253 gagcagg 1259 || |||| Sbjct: 27041 gaacagg 27035 Score = 52.0 bits (26), Expect = 0.008 Identities = 62/74 (83%) Strand = Plus / Minus Query: 83 atgagcacgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgc 142 |||||| | ||||||||||| || ||||| ||||| || ||||| |||| ||||| ||| Sbjct: 30554 atgagctcatggaactacgttgttacggctcacaaaccgaccagtgtcactcactcgtgc 30495 Query: 143 gtcggcaacttcac 156 || ||||||||||| Sbjct: 30494 gttggcaacttcac 30481 Score = 48.1 bits (24), Expect = 0.13 Identities = 45/52 (86%) Strand = Plus / Minus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 ||||||| ||||| || || || |||||||| ||||||||||| |||||||| Sbjct: 28733 aggttattccatttgataataagggacagctcaaggaagcttttaatatcag 28682 Score = 42.1 bits (21), Expect = 7.9 Identities = 84/105 (80%) Strand = Plus / Minus Query: 627 aggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagatt 686 |||| ||||||||||| | ||||| || ||||||||||| | || || || || |||| Sbjct: 28147 aggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctcttaaagataaggatt 28088 Query: 687 tcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 | |||||||| || ||||| ||||||| | | |||||||| |||| Sbjct: 28087 ttgtcgagggtccatggtctcagaacagtctcgacaatggtgctg 28043
>gb|AY531661.1| Lycopersicon cheesmanii UV-damaged DNA binding protein 1 (hp1) gene, promoter and complete cds Length = 23464 Score = 67.9 bits (34), Expect = 1e-07 Identities = 64/74 (86%) Strand = Plus / Plus Query: 1130 ggacctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtc 1189 |||||||||||||||||||| || ||||| || || |||||||| ||||||||||| || Sbjct: 11385 ggacctattgtggacttctgtgttgttgatctggaaaggcaaggtcaaggtcaggttgta 11444 Query: 1190 acttgttcaggagc 1203 ||||| || ||||| Sbjct: 11445 acttgctctggagc 11458 Score = 48.1 bits (24), Expect = 0.13 Identities = 45/52 (86%) Strand = Plus / Plus Query: 501 aggttataccattcgacaacaaaggacagctgaaggaagctttcaatatcag 552 ||||||| ||||| || |||||||| || |||||||||||||| || ||||| Sbjct: 8701 aggttattccatttgataacaaaggccaactgaaggaagcttttaacatcag 8752 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 248 gtgcccatatatgggaggatcgcgac 273 ||||| |||||||||||||||||||| Sbjct: 7520 gtgccaatatatgggaggatcgcgac 7545 Score = 44.1 bits (22), Expect = 2.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 626 caggataacaaagatgccaggcatgttaagacatatga 663 ||||||||||| |||||| ||||||| || |||||||| Sbjct: 10403 caggataacaaggatgcccggcatgtcaaaacatatga 10440
>dbj|AK230366.1| Arabidopsis thaliana mRNA for UV-damaged DNA binding factor - like protein, partial cds, clone: RAFL24-24-M01 Length = 2426 Score = 65.9 bits (33), Expect = 5e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 1172 gggcaaggtcaggtggtcacttgttcaggagcattcaaagatggttccattcgagtggtt 1231 |||||||||||||| || |||||||| |||||||| || ||||||||| | || || ||| Sbjct: 6 gggcaaggtcaggttgtaacttgttctggagcatttaaggatggttccctccgcgtagtt 65 Query: 1232 cgtaatggtatagggattaatgagcaggc 1260 || ||||| ||||| || ||||| ||||| Sbjct: 66 cgcaatggaataggaatcaatgaacaggc 94
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 65.9 bits (33), Expect = 5e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 90 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 149 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 22752239 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 22752298 Query: 150 acttcaccg 158 ||||||||| Sbjct: 22752299 acttcaccg 22752307
>dbj|AP003341.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0024F06 Length = 129402 Score = 65.9 bits (33), Expect = 5e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 90 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 149 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 128951 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 129010 Query: 150 acttcaccg 158 ||||||||| Sbjct: 129011 acttcaccg 129019
>dbj|AP003492.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0712E02 Length = 158084 Score = 65.9 bits (33), Expect = 5e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 90 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 149 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 69628 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 69687 Query: 150 acttcaccg 158 ||||||||| Sbjct: 69688 acttcaccg 69696
>dbj|AK103584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133B01, full insert sequence Length = 663 Score = 65.9 bits (33), Expect = 5e-07 Identities = 60/69 (86%) Strand = Plus / Plus Query: 90 cgtggaactacgtcgtgacggcgcacaagcccaccagcgtcagccactcctgcgtcggca 149 ||||||||||||| |||||||||||||||| || |||| || |||||||||||||| Sbjct: 146 cgtggaactacgtggtgacggcgcacaagctgacggtcgtcgcccgctcctgcgtcggca 205 Query: 150 acttcaccg 158 ||||||||| Sbjct: 206 acttcaccg 214
>emb|AL161554.2|ATCHRIV54 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 54 Length = 198715 Score = 61.9 bits (31), Expect = 9e-06 Identities = 103/127 (81%) Strand = Plus / Minus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| || || || || ||||||||||| || || |||||||||||||| || ||| Sbjct: 73637 cctattgtcgatttttgtgtagttgaccttgagagacaggggcaaggtcaggttgtaact 73578 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 || || ||||||| ||| |||||||| |||| | ||||| ||||| ||||| || ||| Sbjct: 73577 tgctctggagcatacaaggatggttctcttcgcatagttcgcaatgggataggaataaat 73518 Query: 1253 gagcagg 1259 || |||| Sbjct: 73517 gaacagg 73511 Score = 52.0 bits (26), Expect = 0.008 Identities = 86/106 (81%) Strand = Plus / Minus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || |||||||||||| | || ||||| || | Sbjct: 74546 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataagaac 74487 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || ||||| || || ||||||||||||||| | |||||||| |||| Sbjct: 74486 tttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctg 74441
>emb|AL021960.2|ATF7J7 Arabidopsis thaliana DNA chromosome 4, BAC clone F7J7 (ESSA project) Length = 91387 Score = 61.9 bits (31), Expect = 9e-06 Identities = 103/127 (81%) Strand = Plus / Minus Query: 1133 cctattgtggacttctgcgtggttgaccttgataggcaagggcaaggtcaggtggtcact 1192 |||||||| || || || || ||||||||||| || || |||||||||||||| || ||| Sbjct: 15434 cctattgtcgatttttgtgtagttgaccttgagagacaggggcaaggtcaggttgtaact 15375 Query: 1193 tgttcaggagcattcaaagatggttccattcgagtggttcgtaatggtatagggattaat 1252 || || ||||||| ||| |||||||| |||| | ||||| ||||| ||||| || ||| Sbjct: 15374 tgctctggagcatacaaggatggttctcttcgcatagttcgcaatgggataggaataaat 15315 Query: 1253 gagcagg 1259 || |||| Sbjct: 15314 gaacagg 15308 Score = 52.0 bits (26), Expect = 0.008 Identities = 86/106 (81%) Strand = Plus / Minus Query: 626 caggataacaaagatgccaggcatgttaagacatatgaagttgcactgaaggagaaagat 685 ||||| ||||||||||| | ||||| || |||||||||||| | || ||||| || | Sbjct: 16343 caggacaacaaagatgctcgtcatgtcaaaacatatgaagtttctctaaaggataagaac 16284 Query: 686 ttcgtcgagggcccttggtcacagaacaatttagacaatggagctg 731 || ||||| || || ||||||||||||||| | |||||||| |||| Sbjct: 16283 tttgtcgaaggtccatggtcacagaacaatctcgacaatggtgctg 16238
>ref|XM_001032686.1| Tetrahymena thermophila SB210 Kinesin motor domain containing protein (TTHERM_00529750) mRNA, complete cds Length = 3855 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Plus Query: 1382 gaagatgaattagaagaaattgag 1405 |||||||||||||||||||||||| Sbjct: 748 gaagatgaattagaagaaattgag 771
>ref|XM_636185.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0206412) mRNA, complete cds Length = 2727 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 1731 tacaaattgaccaaactacacttg 1754 |||||||||||||||||||||||| Sbjct: 2041 tacaaattgaccaaactacacttg 2018
>emb|CT797480.11| Pig DNA sequence from clone CH242-209J20 on chromosome 7, complete sequence Length = 162225 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1380 tggaagatgaattagaagaaat 1401 |||||||||||||||||||||| Sbjct: 47471 tggaagatgaattagaagaaat 47450
>gb|AC189966.3| Rhesus Macaque BAC CH250-311D22 () complete sequence Length = 128464 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1687 catgttttaattctttgtcaat 1708 |||||||||||||||||||||| Sbjct: 13498 catgttttaattctttgtcaat 13519
>gb|BT019136.1| Zea mays clone Contig775.F mRNA sequence Length = 960 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1202 gcattcaaagatggttccattcgagt 1227 |||| ||||||||||||||||||||| Sbjct: 290 gcatccaaagatggttccattcgagt 315
>gb|BT017194.1| Zea mays clone EL01N0371D04.c mRNA sequence Length = 733 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1202 gcattcaaagatggttccattcgagt 1227 |||| ||||||||||||||||||||| Sbjct: 11 gcatccaaagatggttccattcgagt 36
>gb|BC061946.1| Xenopus laevis hypothetical protein MGC68476, mRNA (cDNA clone MGC:68476 IMAGE:3399801), complete cds Length = 4145 Score = 44.1 bits (22), Expect = 2.0 Identities = 61/74 (82%) Strand = Plus / Plus Query: 440 attgggatcatcgaccctgactgtagacttattggccttcacctctatgatgggttgttt 499 ||||||||||| ||||| ||||| ||| | ||||| |||| || ||||||||| | ||| Sbjct: 460 attgggatcattgacccagactgcagaatgattggtcttcgtctttatgatgggctattt 519 Query: 500 aaggttataccatt 513 || || |||||||| Sbjct: 520 aaagtcataccatt 533
>gb|AC104071.3| Homo sapiens BAC clone RP11-315A17 from 4, complete sequence Length = 184001 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 ggcatctctcctaccacctctccacc 26 |||||||| ||||||||||||||||| Sbjct: 134942 ggcatctcccctaccacctctccacc 134967
>gb|AC020734.6| Homo sapiens BAC clone RP11-665I14 from 4, complete sequence Length = 196550 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 ggcatctctcctaccacctctccacc 26 |||||||| ||||||||||||||||| Sbjct: 156329 ggcatctcccctaccacctctccacc 156304
>gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 22q11, complete sequence Length = 163955 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1202 gcattcaaagatggttccattcgagt 1227 |||||||| ||||||||||||||||| Sbjct: 149605 gcattcaatgatggttccattcgagt 149630
>gb|AC127285.4| Mus musculus BAC clone RP23-336P20 from chromosome 8, complete sequence Length = 232127 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1167 ggcaagggcaaggtcaggtggt 1188 |||||||||||||||||||||| Sbjct: 119623 ggcaagggcaaggtcaggtggt 119644
>emb|BX936308.13| Zebrafish DNA sequence from clone CH211-152F6 in linkage group 3, complete sequence Length = 110020 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 997 gtcaatatcgtatcttgataat 1018 |||||||||||||||||||||| Sbjct: 101143 gtcaatatcgtatcttgataat 101164
>emb|BX914211.5| Zebrafish DNA sequence from clone DKEY-91D10 in linkage group 3, complete sequence Length = 179226 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 997 gtcaatatcgtatcttgataat 1018 |||||||||||||||||||||| Sbjct: 33430 gtcaatatcgtatcttgataat 33451
>gb|AC102632.8| Mus musculus chromosome 5, clone RP23-286C5, complete sequence Length = 200020 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 790 aatagtttactgcaatgctaat 811 |||||||||||||||||||||| Sbjct: 73625 aatagtttactgcaatgctaat 73646
>gb|AY106510.1| Zea mays PCO107914 mRNA sequence Length = 1820 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1202 gcattcaaagatggttccattcgagt 1227 |||| ||||||||||||||||||||| Sbjct: 1045 gcatccaaagatggttccattcgagt 1070
>ref|XM_001023135.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00492430) mRNA, complete cds Length = 564 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 809 aattctacatttagagctata 829 ||||||||||||||||||||| Sbjct: 276 aattctacatttagagctata 296
>ref|XM_971265.1| PREDICTED: Tribolium castaneum hypothetical protein LOC660773 (LOC660773), mRNA Length = 2037 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1733 caaattgaccaaactacactt 1753 ||||||||||||||||||||| Sbjct: 901 caaattgaccaaactacactt 881
>gb|AY448799.1| Callithrix jacchus clone OLG_24 olfactory receptor-like protein gene, partial sequence Length = 667 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1292 tggtcactgaagtcttccttc 1312 ||||||||||||||||||||| Sbjct: 135 tggtcactgaagtcttccttc 155
>gb|AY904598.1| HIV-1 isolate 04MYKL1798 from Malaysia protease (pol) gene, partial cds Length = 291 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 aggacagctgaaggaagcttt 543 ||||||||||||||||||||| Sbjct: 52 aggacagctgaaggaagcttt 72
>gb|AC079934.3| Homo sapiens BAC clone RP11-327C24 from UL, complete sequence Length = 47736 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 3616 cattcaatgatggttccattcgagt 3640
>gb|AC127387.3| Homo sapiens BAC clone RP11-28J3 from UL, complete sequence Length = 47702 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1203 cattcaaagatggttccattcgagt 1227 |||||||||||| |||||||||||| Sbjct: 19398 cattcaaagatgattccattcgagt 19422
>gb|AC127701.2| Homo sapiens BAC clone RP11-79F18 from UL, complete sequence Length = 161405 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 154380 cattcaatgatggttccattcgagt 154404
>gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complete sequence Length = 188672 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 9895 cattcaatgatggttccattcgagt 9871
>gb|AC093006.4| Homo sapiens 3 BAC RP11-394D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 215577 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1015 taatggtgttgtctatgttgg 1035 ||||||||||||||||||||| Sbjct: 75288 taatggtgttgtctatgttgg 75308
>gb|AC004943.2| Homo sapiens PAC clone RP5-991G20 from 16, complete sequence Length = 141313 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1453 catcaatgatctgcttataca 1473 ||||||||||||||||||||| Sbjct: 34173 catcaatgatctgcttataca 34193
>emb|CR847563.12| Zebrafish DNA sequence from clone CH211-202H14 in linkage group 11, complete sequence Length = 204337 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1864 ttcttcattttgtattgttaa 1884 ||||||||||||||||||||| Sbjct: 167640 ttcttcattttgtattgttaa 167660
>emb|AL032660.1|CEY70G10A Caenorhabditis elegans YAC Y70G10A, complete sequence Length = 26253 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1862 ttttcttcattttgtattgttaact 1886 ||||||| ||||||||||||||||| Sbjct: 19555 ttttcttgattttgtattgttaact 19579
>emb|AL022343.6|HS608E8 Human DNA sequence from clone RP4-608E8 on chromosome 6p22.1-22.3 Contains the 5' end of the DTNBP1 gene for dystobrevin binding protein 1 and a CpG island, complete sequence Length = 92143 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 622 ctaccaggataacaaagatgc 642 ||||||||||||||||||||| Sbjct: 47808 ctaccaggataacaaagatgc 47828
>gb|AC062004.5| Homo sapiens chromosome 8, clone RP11-325O20, complete sequence Length = 205646 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1861 tttttcttcattttgtattgt 1881 ||||||||||||||||||||| Sbjct: 50534 tttttcttcattttgtattgt 50554
>emb|AL662900.12| Mouse DNA sequence from clone RP23-413L24 on chromosome 11 Contains a CpG island, complete sequence Length = 190156 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1380 tggaagatgaattagaagaaattga 1404 ||||||||||| ||||||||||||| Sbjct: 48116 tggaagatgaaatagaagaaattga 48140
>gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complete sequence Length = 194995 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 184366 cattcaatgatggttccattcgagt 184342 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 190983 cattcaatgatggttccattcgagt 190959
>gb|AC106819.3| Homo sapiens chromosome 16 clone RP11-696P19, complete sequence Length = 122793 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 46436 cattcaacgatggttccattcgagt 46412
>gb|AC137499.2| Homo sapiens chromosome 16 clone RP11-317D10, complete sequence Length = 159831 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 37910 cattcaatgatggttccattcgagt 37886
>gb|AC019340.6| Homo sapiens BAC clone RP11-715L17 from 7, complete sequence Length = 190137 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 19631 cattcaatgatggttccattcgagt 19607
>gb|AY960941.1| HIV-1 isolate 03MYKL1510 from Malaysia protease (pol) gene, partial cds Length = 291 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 aggacagctgaaggaagcttt 543 ||||||||||||||||||||| Sbjct: 52 aggacagctgaaggaagcttt 72
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1379 atggaagatgaattagaagaa 1399 ||||||||||||||||||||| Sbjct: 1494340 atggaagatgaattagaagaa 1494360
>gb|DQ018354.1| HIV-1 isolate 04MYIDUB11 from Malaysia pol protein (pol) gene, partial cds Length = 1107 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 523 aggacagctgaaggaagcttt 543 ||||||||||||||||||||| Sbjct: 106 aggacagctgaaggaagcttt 126
>gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, complete sequence Length = 189849 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1922 tatttgtttttacctacaaaataat 1946 ||||||||||||||| ||||||||| Sbjct: 123591 tatttgtttttacctccaaaataat 123567
>ref|XM_724618.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01882) partial mRNA Length = 1119 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 704 tcacagaacaatttagacaat 724 ||||||||||||||||||||| Sbjct: 415 tcacagaacaatttagacaat 435
>dbj|AP000543.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region, clone:c20H12 Length = 36955 Score = 42.1 bits (21), Expect = 7.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1203 cattcaaagatggttccattcgagt 1227 ||||||| ||||||||||||||||| Sbjct: 188 cattcaatgatggttccattcgagt 164 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 357,513,289 Number of extensions: 19376766 Number of successful extensions: 99068 Number of sequences better than 10.0: 66 Number of HSP's gapped: 99059 Number of HSP's successfully gapped: 131 Length of query: 2076 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2053 Effective length of database: 18,503,978,556 Effective search space: 37988667975468 Effective search space used: 37988667975468 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
