| Clone Name | FLbaf63h21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR855162.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0152L12, complete sequence Length = 91167 Score = 222 bits (112), Expect = 2e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 834 aagacggcggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggcc 893 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 41809 aagacggcggagacggcggagggcgccatggacagggccggcgaggccaaggacaggaca 41868 Query: 894 gcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagc 953 | ||| || || | | |||||| ||||||||||||||| |||||||||| || || ||| Sbjct: 41869 gtggaagggacgaagcacgccggcgagaaggtggcggagatgaccaaggaaggggcgagc 41928 Query: 954 aaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcc 1013 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41929 aaggtggtggagacggcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcg 41988 Query: 1014 tgggacgccaccaagg 1029 |||| ||||||||||| Sbjct: 41989 tggggcgccaccaagg 42004 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1097 cgacgtcgaggcggcgacgaaggagagggacaggatcgcgcaggaggagcggaagaggca 1156 ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct: 42048 cgacgccgacgccgcgatgaaggagcaggacaggatcgcgcaggaggagaagaagaggca 42107 Query: 1157 ggccagggagaagggcgccggcttgcc 1183 |||||||||||||||||| |||||||| Sbjct: 42108 ggccagggagaagggcgctggcttgcc 42134 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 415 cggacgaccggagggacgtcaaggacaagtacaggggcgcggcggagcaggccaaggacg 474 |||||||||| ||||||||| ||||| |||||||| ||| |||||| |||| ||||| | Sbjct: 41510 cggacgaccgaagggacgtcggggacaggtacagggacgccgcggaggaggcgaaggagg 41569 Query: 475 ccaccggcgatgccaaggag 494 |||||||||| ||||||||| Sbjct: 41570 ccaccggcgacgccaaggag 41589 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 99 catccatgtccaggttgatggccgccatgcttctcggaggcgcgcgggtcgcc 151 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct: 41207 catccatgtccaggttgatggccgccatgctgctcggtggcgcccgcgtcgcc 41259
>ref|NM_001060366.1| Oryza sativa (japonica cultivar-group) Os04g0610600 (Os04g0610600) mRNA, complete cds Length = 1074 Score = 222 bits (112), Expect = 2e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 834 aagacggcggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggcc 893 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 573 aagacggcggagacggcggagggcgccatggacagggccggcgaggccaaggacaggaca 632 Query: 894 gcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagc 953 | ||| || || | | |||||| ||||||||||||||| |||||||||| || || ||| Sbjct: 633 gtggaagggacgaagcacgccggcgagaaggtggcggagatgaccaaggaaggggcgagc 692 Query: 954 aaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcc 1013 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 693 aaggtggtggagacggcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcg 752 Query: 1014 tgggacgccaccaagg 1029 |||| ||||||||||| Sbjct: 753 tggggcgccaccaagg 768 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1097 cgacgtcgaggcggcgacgaaggagagggacaggatcgcgcaggaggagcggaagaggca 1156 ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct: 812 cgacgccgacgccgcgatgaaggagcaggacaggatcgcgcaggaggagaagaagaggca 871 Query: 1157 ggccagggagaagggcgccggcttgcc 1183 |||||||||||||||||| |||||||| Sbjct: 872 ggccagggagaagggcgctggcttgcc 898 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 415 cggacgaccggagggacgtcaaggacaagtacaggggcgcggcggagcaggccaaggacg 474 |||||||||| ||||||||| ||||| |||||||| ||| |||||| |||| ||||| | Sbjct: 274 cggacgaccgaagggacgtcggggacaggtacagggacgccgcggaggaggcgaaggagg 333 Query: 475 ccaccggcgatgccaaggag 494 |||||||||| ||||||||| Sbjct: 334 ccaccggcgacgccaaggag 353 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 99 catccatgtccaggttgatggccgccatgcttctcggaggcgcgcgggtcgcc 151 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct: 73 catccatgtccaggttgatggccgccatgctgctcggtggcgcccgcgtcgcc 125
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 222 bits (112), Expect = 2e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 834 aagacggcggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggcc 893 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 30985522 aagacggcggagacggcggagggcgccatggacagggccggcgaggccaaggacaggaca 30985581 Query: 894 gcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagc 953 | ||| || || | | |||||| ||||||||||||||| |||||||||| || || ||| Sbjct: 30985582 gtggaagggacgaagcacgccggcgagaaggtggcggagatgaccaaggaaggggcgagc 30985641 Query: 954 aaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcc 1013 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30985642 aaggtggtggagacggcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcg 30985701 Query: 1014 tgggacgccaccaagg 1029 |||| ||||||||||| Sbjct: 30985702 tggggcgccaccaagg 30985717 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1097 cgacgtcgaggcggcgacgaaggagagggacaggatcgcgcaggaggagcggaagaggca 1156 ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct: 30985761 cgacgccgacgccgcgatgaaggagcaggacaggatcgcgcaggaggagaagaagaggca 30985820 Query: 1157 ggccagggagaagggcgccggcttgcc 1183 |||||||||||||||||| |||||||| Sbjct: 30985821 ggccagggagaagggcgctggcttgcc 30985847 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 415 cggacgaccggagggacgtcaaggacaagtacaggggcgcggcggagcaggccaaggacg 474 |||||||||| ||||||||| ||||| |||||||| ||| |||||| |||| ||||| | Sbjct: 30985223 cggacgaccgaagggacgtcggggacaggtacagggacgccgcggaggaggcgaaggagg 30985282 Query: 475 ccaccggcgatgccaaggag 494 |||||||||| ||||||||| Sbjct: 30985283 ccaccggcgacgccaaggag 30985302 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 99 catccatgtccaggttgatggccgccatgcttctcggaggcgcgcgggtcgcc 151 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct: 30984920 catccatgtccaggttgatggccgccatgctgctcggtggcgcccgcgtcgcc 30984972
>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10, complete sequence Length = 150551 Score = 222 bits (112), Expect = 2e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 834 aagacggcggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggcc 893 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 82895 aagacggcggagacggcggagggcgccatggacagggccggcgaggccaaggacaggaca 82954 Query: 894 gcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagc 953 | ||| || || | | |||||| ||||||||||||||| |||||||||| || || ||| Sbjct: 82955 gtggaagggacgaagcacgccggcgagaaggtggcggagatgaccaaggaaggggcgagc 83014 Query: 954 aaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcc 1013 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 83015 aaggtggtggagacggcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcg 83074 Query: 1014 tgggacgccaccaagg 1029 |||| ||||||||||| Sbjct: 83075 tggggcgccaccaagg 83090 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1097 cgacgtcgaggcggcgacgaaggagagggacaggatcgcgcaggaggagcggaagaggca 1156 ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct: 83134 cgacgccgacgccgcgatgaaggagcaggacaggatcgcgcaggaggagaagaagaggca 83193 Query: 1157 ggccagggagaagggcgccggcttgcc 1183 |||||||||||||||||| |||||||| Sbjct: 83194 ggccagggagaagggcgctggcttgcc 83220 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 415 cggacgaccggagggacgtcaaggacaagtacaggggcgcggcggagcaggccaaggacg 474 |||||||||| ||||||||| ||||| |||||||| ||| |||||| |||| ||||| | Sbjct: 82596 cggacgaccgaagggacgtcggggacaggtacagggacgccgcggaggaggcgaaggagg 82655 Query: 475 ccaccggcgatgccaaggag 494 |||||||||| ||||||||| Sbjct: 82656 ccaccggcgacgccaaggag 82675 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 99 catccatgtccaggttgatggccgccatgcttctcggaggcgcgcgggtcgcc 151 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct: 82293 catccatgtccaggttgatggccgccatgctgctcggtggcgcccgcgtcgcc 82345
>dbj|AK073109.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022D23, full insert sequence Length = 1075 Score = 222 bits (112), Expect = 2e-54 Identities = 175/196 (89%) Strand = Plus / Plus Query: 834 aagacggcggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggcc 893 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| | Sbjct: 574 aagacggcggagacggcggagggcgccatggacagggccggcgaggccaaggacaggaca 633 Query: 894 gcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagc 953 | ||| || || | | |||||| ||||||||||||||| |||||||||| || || ||| Sbjct: 634 gtggaagggacgaagcacgccggcgagaaggtggcggagatgaccaaggaaggggcgagc 693 Query: 954 aaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcc 1013 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 aaggtggtggagacggcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcg 753 Query: 1014 tgggacgccaccaagg 1029 |||| ||||||||||| Sbjct: 754 tggggcgccaccaagg 769 Score = 101 bits (51), Expect = 6e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 1097 cgacgtcgaggcggcgacgaaggagagggacaggatcgcgcaggaggagcggaagaggca 1156 ||||| ||| || |||| ||||||| |||||||||||||||||||||| ||||||||| Sbjct: 813 cgacgccgacgccgcgatgaaggagcaggacaggatcgcgcaggaggagaagaagaggca 872 Query: 1157 ggccagggagaagggcgccggcttgcc 1183 |||||||||||||||||| |||||||| Sbjct: 873 ggccagggagaagggcgctggcttgcc 899 Score = 79.8 bits (40), Expect = 2e-11 Identities = 70/80 (87%) Strand = Plus / Plus Query: 415 cggacgaccggagggacgtcaaggacaagtacaggggcgcggcggagcaggccaaggacg 474 |||||||||| ||||||||| ||||| |||||||| ||| |||||| |||| ||||| | Sbjct: 275 cggacgaccgaagggacgtcggggacaggtacagggacgccgcggaggaggcgaaggagg 334 Query: 475 ccaccggcgatgccaaggag 494 |||||||||| ||||||||| Sbjct: 335 ccaccggcgacgccaaggag 354 Score = 73.8 bits (37), Expect = 1e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 99 catccatgtccaggttgatggccgccatgcttctcggaggcgcgcgggtcgcc 151 ||||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct: 74 catccatgtccaggttgatggccgccatgctgctcggtggcgcccgcgtcgcc 126
>gb|BT019040.1| Zea mays clone Contig560.F mRNA sequence Length = 812 Score = 135 bits (68), Expect = 4e-28 Identities = 152/180 (84%) Strand = Plus / Minus Query: 842 ggaggtggcggagggcgccatggacagggccggcgaagccaaggacagggccgcggaggg 901 ||||| ||||| | ||||||||||||||||||| || ||||||||| |||||| |||||| Sbjct: 480 ggaggcggcggggcgcgccatggacagggccggggaggccaaggaccgggccgtggaggg 421 Query: 902 caccaggagcgccggggagaaggtggcggagttgaccaaggagggcgcaagcaaggtggc 961 ||| | |||||||||||||| |||| |||||||||||||||| | |||||||| Sbjct: 420 gaccgcgtcgtacggggagaaggtggtggagatgaccaaggagggcgcggggaaggtggc 361 Query: 962 ggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggcgcctgggacgc 1021 ||||| |||||||||||||| || | ||||||||||||||||| | || |||||||||| Sbjct: 360 cgagacggcgcaggccatcggggacatggcgaagcaggcggcgcggagcacctgggacgc 301 Score = 50.1 bits (25), Expect = 0.020 Identities = 34/37 (91%) Strand = Plus / Minus Query: 1151 gaggcaggccagggagaagggcgccggcttgccgtag 1187 |||| ||||||||||||||||| | |||||||||||| Sbjct: 174 gagggaggccagggagaagggctcgggcttgccgtag 138
>emb|AJ512944.1|HVU512944 Hordeum vulgare cor14b gene for cold regulated protein Length = 1395 Score = 81.8 bits (41), Expect = 6e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 891 gccgcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgca 950 |||| ||||||| ||| ||||||||| |||| |||| ||| | ||||||| ||||| Sbjct: 1081 gccgtggagggcgccaagagcgccggcgagagcgtggtggacgcggccaaggatggcgcg 1140 Query: 951 agcaaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggc 1010 ||||||||| ||||||||||||| | |||||| | |||| |||||||||||| ||| Sbjct: 1141 agcaaggtgagcgagaccgcgcaggacctcggcgggcaggccaagcaggcggcggaggaa 1200 Query: 1011 gcctgggacgccaccaagggagccgcgca 1039 || |||||||||||||||| |||||||| Sbjct: 1201 gcgtgggacgccaccaaggacgccgcgca 1229
>gb|M60732.1|BLYCLDAA Hordeum vulgare cold-regulated mRNA, 3' end Length = 653 Score = 81.8 bits (41), Expect = 6e-12 Identities = 122/149 (81%) Strand = Plus / Plus Query: 891 gccgcggagggcaccaggagcgccggggagaaggtggcggagttgaccaaggagggcgca 950 |||| ||||||| ||| ||||||||| |||| |||| ||| | ||||||| ||||| Sbjct: 315 gccgtggagggcgccaagagcgccggcgagagcgtggtggacgcggccaaggatggcgcg 374 Query: 951 agcaaggtggcggagaccgcgcaggccatcggcgagaaggcgaagcaggcggcgcagggc 1010 ||||||||| ||||||||||||| | |||||| | |||| |||||||||||| ||| Sbjct: 375 agcaaggtgagcgagaccgcgcaggacctcggcgggcaggccaagcaggcggcggaggaa 434 Query: 1011 gcctgggacgccaccaagggagccgcgca 1039 || |||||||||||||||| |||||||| Sbjct: 435 gcgtgggacgccaccaaggacgccgcgca 463
>emb|AM261428.1| Sporobolus stapfianus mRNA for putative group 3 late embryogenesis abundant protein (sdg2i gene) Length = 1089 Score = 77.8 bits (39), Expect = 9e-11 Identities = 90/107 (84%) Strand = Plus / Plus Query: 913 ccggggagaaggtggcggagttgaccaaggagggcgcaagcaaggtggcggagaccgcgc 972 |||| ||||||||| |||| ||||||||||||||| | ||||| ||| ||||||| || Sbjct: 652 ccggcgagaaggtgatggagaagaccaaggagggcgccaacaaggcggccgagaccgtgc 711 Query: 973 aggccatcggcgagaaggcgaagcaggcggcgcagggcgcctgggac 1019 ||| |||||||||||| |||||||||||||||||| | |||||| Sbjct: 712 aggaggccggcgagaaggccaagcaggcggcgcagggcacgtgggac 758 Score = 48.1 bits (24), Expect = 0.081 Identities = 36/40 (90%) Strand = Plus / Plus Query: 1151 gaggcaggccagggagaagggcgccggcttgccgtagacg 1190 ||||||||||| |||||| |||||||| ||||||||||| Sbjct: 823 gaggcaggccatggagaacggcgccgggctgccgtagacg 862 Score = 42.1 bits (21), Expect = 5.0 Identities = 39/45 (86%) Strand = Plus / Plus Query: 616 aggccgcggacaaggcgggcgagatgaaagaccgggccaaggaga 660 |||||| |||||||||||| || |||| |||||||||| ||||| Sbjct: 475 aggccggggacaaggcgggggacgtgaaggaccgggccatggaga 519
>gb|AF491837.1| Triticum aestivum cultivar Fredrick WCOR14c mRNA, complete cds Length = 604 Score = 54.0 bits (27), Expect = 0.001 Identities = 42/47 (89%) Strand = Plus / Plus Query: 981 ggcgagaaggcgaagcaggcggcgcagggcgcctgggacgccaccaa 1027 ||||||||||||||||||||| || ||| || |||||||||||||| Sbjct: 316 ggcgagaaggcgaagcaggcgacggaggaggcgtgggacgccaccaa 362
>gb|AF491838.1| Triticum aestivum cultivar Fredrick WCOR14a mRNA, complete cds Length = 645 Score = 50.1 bits (25), Expect = 0.020 Identities = 43/49 (87%) Strand = Plus / Plus Query: 979 tcggcgagaaggcgaagcaggcggcgcagggcgcctgggacgccaccaa 1027 ||||||||||||||||||||||| || ||| || ||||| |||||||| Sbjct: 314 tcggcgagaaggcgaagcaggcgacggaggaggcgtgggatgccaccaa 362
>gb|AF207545.1|AF207545 Triticum aestivum cultivar Mironovska 808 cold-responsive protein COR14a (cor14a) mRNA, complete cds Length = 638 Score = 50.1 bits (25), Expect = 0.020 Identities = 43/49 (87%) Strand = Plus / Plus Query: 979 tcggcgagaaggcgaagcaggcggcgcagggcgcctgggacgccaccaa 1027 ||||||||||||||||||||||| || ||| || ||||| |||||||| Sbjct: 379 tcggcgagaaggcgaagcaggcgacggaggaggcgtgggatgccaccaa 427
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.32 Identities = 26/27 (96%) Strand = Plus / Plus Query: 969 gcgcaggccatcggcgagaaggcgaag 995 |||||||||||||||||||| |||||| Sbjct: 1751777 gcgcaggccatcggcgagaacgcgaag 1751803
>gb|AC012294.15| Mus musculus chromosome 11, clone RP23-328G11, complete sequence Length = 222121 Score = 46.1 bits (23), Expect = 0.32 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1150 agaggcaggccagggagaagggc 1172 ||||||||||||||||||||||| Sbjct: 169224 agaggcaggccagggagaagggc 169246
>emb|AL626807.7| Mouse DNA sequence from clone RP23-350G1 on chromosome 11 Contains two novel genes, the 5' end of the Accn1 gene for neuronal amiloride-sensitive cation channel 1 (degenerin) and the Ccl2 and Ccl7 genes for chemokine (C-C motif) ligand 2 and 7, complete sequence Length = 223726 Score = 46.1 bits (23), Expect = 0.32 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1150 agaggcaggccagggagaagggc 1172 ||||||||||||||||||||||| Sbjct: 78390 agaggcaggccagggagaagggc 78412
>gb|AF207546.1|AF207546 Triticum aestivum cultivar Mironovska 808 cold-responsive protein COR14b (cor14b) mRNA, complete cds Length = 576 Score = 46.1 bits (23), Expect = 0.32 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 981 ggcgagaaggcgaagcaggcggcgcagggcgcctgggacgccaccaa 1027 ||||||||||||||||||||| || | || || |||||||||||||| Sbjct: 389 ggcgagaaggcgaagcaggcgacgga-ggagcgtgggacgccaccaa 434
>emb|AL713839.1|CNS07YOT Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 149H13 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 240425 Score = 46.1 bits (23), Expect = 0.32 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1150 agaggcaggccagggagaagggc 1172 ||||||||||||||||||||||| Sbjct: 3824 agaggcaggccagggagaagggc 3802
>ref|XM_001209565.1| Aspergillus terreus NIH2624 hypothetical protein (ATEG_06879) mRNA, complete cds Length = 1431 Score = 44.1 bits (22), Expect = 1.3 Identities = 28/30 (93%) Strand = Plus / Plus Query: 465 gccaaggacgccaccggcgatgccaaggag 494 |||||||||||| ||||||| ||||||||| Sbjct: 1078 gccaaggacgccgccggcgacgccaaggag 1107
>ref|XM_521666.2| PREDICTED: Pan troglodytes VENT homeobox (VENTX), mRNA Length = 2929 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 868 ggagcggaagaggctggccagggaga 893
>gb|CP000386.1| Rubrobacter xylanophilus DSM 9941, complete genome Length = 3225748 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Minus Query: 912 gccggggagaaggtggcggagt 933 |||||||||||||||||||||| Sbjct: 713801 gccggggagaaggtggcggagt 713780
>gb|BC108916.1| Homo sapiens VENT homeobox homolog (Xenopus laevis), mRNA (cDNA clone MGC:119911 IMAGE:40015553), complete cds Length = 867 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 368 ggagcggaagaggctggccagggaga 393
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 994 agcaggcggcgcagggcgcctg 1015 |||||||||||||||||||||| Sbjct: 3071798 agcaggcggcgcagggcgcctg 3071819
>emb|AL445199.37| Human DNA sequence from clone RP13-439H18 on chromosome 10 Contains the GPR123 gene for G protein-coupled receptor 123, a novel gene (containing KIAA1768, FLJ00378 and FLJ00252), gene FLJ25027, the UTF1 gene for undifferentiated embryonic cell transcription factor 1, the 5' end of the VENTX2 gene for VENT-like homeobox2, a novel gene, a 60S ribosomal protein L5 (RPL5) pseudogene and twenty five CpG islands, complete sequence Length = 212199 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 208874 ggagcggaagaggctggccagggaga 208899
>gb|AF288039.1|AF288039 Homo sapiens hemopoietic progenitor homeobox protein VENTX2 (VENTX2) gene, complete cds Length = 9721 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 7263 ggagcggaagaggctggccagggaga 7288
>gb|AF068006.1|AF068006 Homo sapiens hemopoietic progenitor homeobox protein VENTX2 (VENTX2) mRNA, complete cds Length = 2435 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 368 ggagcggaagaggctggccagggaga 393
>emb|BX324195.8| Zebrafish DNA sequence from clone CH211-288O15 in linkage group 14, complete sequence Length = 156128 Score = 44.1 bits (22), Expect = 1.3 Identities = 22/22 (100%) Strand = Plus / Plus Query: 911 cgccggggagaaggtggcggag 932 |||||||||||||||||||||| Sbjct: 3958 cgccggggagaaggtggcggag 3979
>gb|BC108915.1| Homo sapiens VENT homeobox homolog (Xenopus laevis), mRNA (cDNA clone MGC:119910 IMAGE:40015551), complete cds Length = 867 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 368 ggagcggaagaggctggccagggaga 393
>ref|NM_014468.2| Homo sapiens VENT homeobox homolog (Xenopus laevis) (VENTX), mRNA Length = 2428 Score = 44.1 bits (22), Expect = 1.3 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1142 ggagcggaagaggcaggccagggaga 1167 |||||||||||||| ||||||||||| Sbjct: 368 ggagcggaagaggctggccagggaga 393
>dbj|AB261103.1| Neurospora crassa mus-41 gene for DNA repair and recombination protein MUS41, complete cds Length = 3812 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 790 aggcgatggacaaggccaagg 810 ||||||||||||||||||||| Sbjct: 1316 aggcgatggacaaggccaagg 1336
>gb|DQ245872.1| Zea mays clone 21433 mRNA sequence Length = 861 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 831 gagaagacggcggaggtggcg 851 ||||||||||||||||||||| Sbjct: 379 gagaagacggcggaggtggcg 399
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gcgtgctcgccggccgccggc 378 ||||||||||||||||||||| Sbjct: 132930 gcgtgctcgccggccgccggc 132910
>emb|CT836171.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN040J21, full insert sequence Length = 770 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 237 gacgacgtcgaggcggcgacg 217
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 cggaggcgcgcgggtcgccagcgcc 157 |||| |||||||||||||||||||| Sbjct: 274763 cggatgcgcgcgggtcgccagcgcc 274787
>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence Length = 3556545 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gcgtgctcgccggccgccggc 378 ||||||||||||||||||||| Sbjct: 131304 gcgtgctcgccggccgccggc 131284
>ref|XR_020931.1| PREDICTED: Pan troglodytes similar to hemopoietic progenitor homeobox protein VENTX2 (LOC743859), mRNA Length = 899 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1143 gagcggaagaggcaggccagggaga 1167 ||||||||||||| ||||||||||| Sbjct: 474 gagcggaagaggctggccagggaga 498
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 cggaggcgcgcgggtcgccagcgcc 157 |||| |||||||||||||||||||| Sbjct: 284948 cggatgcgcgcgggtcgccagcgcc 284972
>ref|XM_001092717.1| PREDICTED: Macaca mulatta similar to VENT homeobox (LOC701963), mRNA Length = 1027 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1143 gagcggaagaggcaggccagggaga 1167 ||||||||||||| ||||||||||| Sbjct: 602 gagcggaagaggctggccagggaga 626
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 gcgtgctcgccggccgccggc 378 ||||||||||||||||||||| Sbjct: 3234088 gcgtgctcgccggccgccggc 3234108
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 cgggtcgccagcgccacggcg 163 ||||||||||||||||||||| Sbjct: 3967732 cgggtcgccagcgccacggcg 3967712
>gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, complete sequence Length = 155145 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 agctcacacacaccaccacca 29 ||||||||||||||||||||| Sbjct: 16986 agctcacacacaccaccacca 16966
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 gcgtgctcgccggccgccggc 378 ||||||||||||||||||||| Sbjct: 145267 gcgtgctcgccggccgccggc 145247
>gb|BC071677.1| Homo sapiens cDNA clone IMAGE:4998897, partial cds Length = 859 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1143 gagcggaagaggcaggccagggaga 1167 ||||||||||||| ||||||||||| Sbjct: 269 gagcggaagaggctggccagggaga 245
>ref|XM_850625.1| PREDICTED: Canis familiaris hypothetical protein LOC606775 (LOC606775), mRNA Length = 519 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 871 ccggcgaagccaaggacaggg 891 ||||||||||||||||||||| Sbjct: 442 ccggcgaagccaaggacaggg 422
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 667 aggaagccgccgagaaggcct 687 ||||||||||||||||||||| Sbjct: 2762264 aggaagccgccgagaaggcct 2762284
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 993 aagcaggcggcgcagggcgcc 1013 ||||||||||||||||||||| Sbjct: 440339 aagcaggcggcgcagggcgcc 440359
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 359 cgtgctcgccggccgccggct 379 ||||||||||||||||||||| Sbjct: 3684541 cgtgctcgccggccgccggct 3684561
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1170 ggcgccggcttgccgtagacg 1190 ||||||||||||||||||||| Sbjct: 3968964 ggcgccggcttgccgtagacg 3968944
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 2244909 gacgacgtcgaggcggcgacg 2244929 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 5954757 gacgacgtcgaggcggcgacg 5954777
>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 240079 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 agctcacacacaccaccacca 29 ||||||||||||||||||||| Sbjct: 85356 agctcacacacaccaccacca 85336
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 727 cggcaagccaggccgcggacaaggcgggc 755 ||||| |||||||||||| |||||||||| Sbjct: 3499633 cggcacgccaggccgcggtcaaggcgggc 3499605 Score = 42.1 bits (21), Expect = 5.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 607 cggcaagccaggccgcggacaaggcgggc 635 ||||| |||||||||||| |||||||||| Sbjct: 3499633 cggcacgccaggccgcggtcaaggcgggc 3499605
>emb|Z28214.1|SCYKL214C S.cerevisiae chromosome XI reading frame ORF YKL214c Length = 1272 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1146 cggaagaggcaggccagggag 1166 ||||||||||||||||||||| Sbjct: 533 cggaagaggcaggccagggag 513
>emb|X75951.1|SC6ORF S.cerevisiae URA1, SAC1, RSD1 and TRP3 genes and 6 new orfs Length = 24577 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1146 cggaagaggcaggccagggag 1166 ||||||||||||||||||||| Sbjct: 16861 cggaagaggcaggccagggag 16841
>emb|X55387.1|RRCYTBC1 R. rubrum cytochrome bc1-complex genes (petA, petB, petC) Length = 5550 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 993 aagcaggcggcgcagggcgcc 1013 ||||||||||||||||||||| Sbjct: 71 aagcaggcggcgcagggcgcc 51
>gb|AC128678.8| Homo sapiens 12 BAC RP11-81H3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 102595 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1143 gagcggaagaggcaggccagggaga 1167 ||||||||||||| ||||||||||| Sbjct: 96009 gagcggaagaggctggccagggaga 95985
>dbj|AP005098.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008C11 Length = 157205 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 9927 gacgacgtcgaggcggcgacg 9947
>dbj|AP003748.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1136_A05 Length = 120823 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 97205 gacgacgtcgaggcggcgacg 97225
>ref|XM_953418.1| Neurospora crassa OR74A hypothetical protein (NCU09516.1) partial mRNA Length = 3528 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 790 aggcgatggacaaggccaagg 810 ||||||||||||||||||||| Sbjct: 1316 aggcgatggacaaggccaagg 1336
>dbj|AP003824.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1343_B12 Length = 121362 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1095 gacgacgtcgaggcggcgacg 1115 ||||||||||||||||||||| Sbjct: 18608 gacgacgtcgaggcggcgacg 18628
>gb|AF166485.1|AF166485 Glycine max maturation protein pPM32 (PM32) mRNA, complete cds Length = 919 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 828 aaggagaagacggcggaggtggcgg 852 ||||||||||||| ||||||||||| Sbjct: 458 aaggagaagacggaggaggtggcgg 482
>gb|DQ333008.1| Synthetic construct Saccharomyces cerevisiae clone FLH113546.01X YRA2 gene, complete sequence Length = 612 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1146 cggaagaggcaggccagggag 1166 ||||||||||||||||||||| Sbjct: 474 cggaagaggcaggccagggag 494
>gb|AF131877.1|AF131877 Streptomyces collinus putative naphthomycin AHBA biosynthetic gene cluster, complete sequence Length = 7298 Score = 42.1 bits (21), Expect = 5.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 680 gaaggcctcccgcatgacggagaag 704 |||||||||||||||||||| |||| Sbjct: 5813 gaaggcctcccgcatgacggcgaag 5789
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1170 ggcgccggcttgccgtagacg 1190 ||||||||||||||||||||| Sbjct: 5374 ggcgccggcttgccgtagacg 5354
>emb|AL732376.2|CNS08C8Z Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152090 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1170 ggcgccggcttgccgtagacg 1190 ||||||||||||||||||||| Sbjct: 130940 ggcgccggcttgccgtagacg 130920
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 42.1 bits (21), Expect = 5.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 715 agacgaaggagacggcaagcc 735 ||||||||||||||||||||| Sbjct: 919373 agacgaaggagacggcaagcc 919393 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 196,506,922 Number of extensions: 11050149 Number of successful extensions: 221644 Number of sequences better than 10.0: 64 Number of HSP's gapped: 221640 Number of HSP's successfully gapped: 90 Length of query: 1310 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1287 Effective length of database: 18,503,978,556 Effective search space: 23814620401572 Effective search space used: 23814620401572 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)