ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf61c05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g11620:12006.t01039:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 3947 Score = 152 bits (326), Expect(7) = 7e-72 Identities = 61/65 (93%), Positives = 64/65 (98%) Frame = +1 / +3 Query: 364 VDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHG 543 VDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF+E EA+QEAVKL+ESELHG Sbjct: 3117 VDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFLEVEAVQEAVKLNESELHG 3296 Query: 544 RQIKV 558 RQIKV Sbjct: 3297 RQIKV 3311 Score = 68.9 bits (144), Expect(7) = 7e-72 Identities = 27/34 (79%), Positives = 31/34 (91%) Frame = +1 / +3 Query: 94 AAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKL 195 AAM DEEHEVYGQEIP+D EDV+MGA GD+AAK+ Sbjct: 99 AAMADEEHEVYGQEIPLDGEDVDMGAPGDEAAKV 200 Score = 51.5 bits (106), Expect(7) = 7e-72 Identities = 19/20 (95%), Positives = 20/20 (100%) Frame = +1 / +1 Query: 556 VAPKRTNVPGLKQPRGGRGF 615 VAPKRTNVPG+KQPRGGRGF Sbjct: 3412 VAPKRTNVPGMKQPRGGRGF 3471 Score = 49.6 bits (102), Expect(7) = 7e-72 Identities = 19/28 (67%), Positives = 26/28 (92%) Frame = +1 / +3 Query: 292 GGDPNATTSEAKEEMDSRSVFVGNVDYA 375 G DPNA++SE+KEEMD+RSV+VGNV ++ Sbjct: 1812 GLDPNASSSESKEEMDARSVYVGNVRFS 1895 Score = 30.9 bits (61), Expect(7) = 7e-72 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 / +3 Query: 606 PRIQPIWRPPLHEAISTTVLQSLW 677 PR Q I L+EAI +T+LQSLW Sbjct: 3453 PRRQRIRWSSLYEAIWSTILQSLW 3524 Score = 24.4 bits (47), Expect(7) = 7e-72 Identities = 8/12 (66%), Positives = 11/12 (91%) Frame = +3 / +2 Query: 696 QVPPTAQALLLK 731 Q+PP+ QA+LLK Sbjct: 3644 QIPPSTQAILLK 3679 Score = 23.1 bits (44), Expect(7) = 7e-72 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = +1 / +3 Query: 265 QAKVAKEMQG 294 Q KVAKEMQG Sbjct: 390 QTKVAKEMQG 419 Score = 100 bits (213), Expect(4) = 3e-33 Identities = 43/66 (65%), Positives = 50/66 (75%) Frame = -2 / -1 Query: 558 NLDLPTMKL*LTKLDSFLNSFCFNKFNISKTFRLPKLVSQDSHSVDGSARIKMLLHFFWS 379 +LDL TM+ * +L+SFLNSF F +FNIS+TF LPKLV QD H VD S IKMLL F W Sbjct: 3311 HLDLATMQF*FVQLNSFLNSFYFKEFNISETFWLPKLVCQDCHPVDRSTGIKMLLDFLWG 3132 Query: 378 ACIVNI 361 ACIVN+ Sbjct: 3131 ACIVNL 3114 Score = 45.5 bits (93), Expect(4) = 3e-33 Identities = 17/20 (85%), Positives = 17/20 (85%) Frame = -3 / -1 Query: 614 NPRPPRGCFNPGTLVRFGAT 555 NP PPRGCF PGTLV FGAT Sbjct: 3470 NPLPPRGCFIPGTLVLFGAT 3411 Score = 39.6 bits (80), Expect(4) = 3e-33 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = -3 / -2 Query: 365 TFPTKTERESISSFASDVVALGSPP 291 TFPT T+R SISSF SD ALGS P Sbjct: 1885 TFPTYTDRASISSFDSDEDALGSRP 1811 Score = 24.9 bits (48), Expect(4) = 3e-33 Identities = 8/14 (57%), Positives = 12/14 (85%) Frame = -1 / -2 Query: 682 NHHKDCKTVVDMAS 641 ++H+DCK V+ MAS Sbjct: 3529 HNHRDCKMVLHMAS 3488 Score = 85.8 bits (181), Expect(3) = 4e-21 Identities = 42/64 (65%), Positives = 44/64 (68%) Frame = +3 / +2 Query: 366 *LCMHSRRSAAAF*FLRNRQPSDYPD*QVWAA*RFCLC*IC*SRSYSGSCQA**VRASWS 545 *LCMH R S AAF*FL N Q D PD QVWA RF LC*I *SRS SGSC +R +WS Sbjct: 3119 *LCMHPRGSPAAF*FLWNGQQGDNPDRQVWATKRFRLC*IP*SRSCSGSC*VERIRTAWS 3298 Query: 546 ANQG 557 NQG Sbjct: 3299 PNQG 3310 Score = 29.5 bits (58), Expect(3) = 4e-21 Identities = 14/21 (66%), Positives = 15/21 (71%) Frame = +2 / +2 Query: 554 RLHRSGLTFLG*SSPEGAEDS 616 R + GLT LG*SSP AEDS Sbjct: 3410 RWRQRGLTSLG*SSPAEAEDS 3472 Score = 24.0 bits (46), Expect(3) = 4e-21 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 / +2 Query: 641 *GHIHHRFTILMVV 682 *GH+ H FTI MV+ Sbjct: 3488 *GHMEHHFTIPMVM 3529 Score = 80.8 bits (170), Expect(4) = 4e-20 Identities = 34/44 (77%), Positives = 36/44 (81%) Frame = -3 / -2 Query: 470 KPLGCPNLSVRIVTRLTVPQELKCCCTSSGVHA*STFPTKTERE 339 KP GCPNLSVRIVT LTVPQELKCC TSSGVHA*ST + R+ Sbjct: 3223 KPFGCPNLSVRIVTLLTVPQELKCCWTSSGVHA*STCSDHSSRK 3092 Score = 31.8 bits (63), Expect(4) = 4e-20 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -2 / -3 Query: 615 ESSAPSGLLQPRNVSPL 565 ESSA +GLL PR+VSPL Sbjct: 3471 ESSASAGLLHPRDVSPL 3421 Score = 28.1 bits (55), Expect(4) = 4e-20 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 / -1 Query: 363 ISNKNRTRIHLFFCFRCGRIRI 298 +SN R +H F FR GRIRI Sbjct: 1883 VSNIYRPSVHFLF*FR*GRIRI 1818 Score = 24.4 bits (47), Expect(4) = 4e-20 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -2 / -3 Query: 714 ARSAEPGSSPITTIRIVKRWWIWPHV 637 A+ S TI IVK IWPH+ Sbjct: 3561 AKQESANSHSPITIGIVKWCSIWPHI 3484 Score = 51.9 bits (107), Expect = 7e-06 Identities = 25/38 (65%), Positives = 27/38 (71%) Frame = -1 / -3 Query: 478 HKQNL*AAQTCQSG*SLG*RFRKN*NAAALLLECMHSQ 365 HK+NL AQTC SG S * F +N*NAA L L CMHSQ Sbjct: 3231 HKRNLLVAQTCLSGLSPC*PFHRN*NAAGLPLGCMHSQ 3118 Score = 40.0 bits (81), Expect(3) = 8e-05 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = +2 / +1 Query: 299 ILMRPHLKQKKRWILVLFLLEMLTMHALQKKCSSI 403 ILMRPHL QK++W L ++LE H L SI Sbjct: 1819 ILMRPHLNQKRKWTLGRYMLET*DFHILYLLSKSI 1923 Score = 27.6 bits (54), Expect(3) = 8e-05 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +3 / +3 Query: 555 GCTEAD*RSWVEAAPRGPRIQ 617 G + D*R W EAAPR RI+ Sbjct: 3411 GGAKED*RPWDEAAPRRQRIR 3473 Score = 24.0 bits (46), Expect(3) = 8e-05 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +2 / +1 Query: 503 FRKLSSLVSQSFMVGKSR 556 FRKL S +Q+ MV KSR Sbjct: 3256 FRKLLS*TNQNCMVAKSR 3309 Score = 31.8 bits (63), Expect(2) = 1.3 Identities = 15/21 (71%), Positives = 16/21 (76%) Frame = +2 / +1 Query: 365 LTMHALQKKCSSILILAEPST 427 LTMHA Q+K SSILI E ST Sbjct: 3118 LTMHAPQRKSSSILIPVERST 3180 Score = 24.9 bits (48), Expect(2) = 1.3 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = +3 / +2 Query: 300 S*CDHI*SKRRDGFSFCFCWK 362 S*C I* KR +G S CWK Sbjct: 1820 S*CVLI*IKRGNGRSVGICWK 1882
>LOC_Os02g52140:12002.t04795:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 4496 Score = 144 bits (308), Expect(5) = 5e-53 Identities = 57/65 (87%), Positives = 62/65 (95%) Frame = +1 / +1 Query: 364 VDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHG 543 VDYACTPEEVQQHF +CGTVNRVTILTDKFGQPKGFAYVEF+E EA+QEA+ L+ESELHG Sbjct: 3577 VDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNLNESELHG 3756 Query: 544 RQIKV 558 RQIKV Sbjct: 3757 RQIKV 3771 Score = 49.6 bits (102), Expect(5) = 5e-53 Identities = 18/25 (72%), Positives = 25/25 (100%) Frame = +1 / +1 Query: 292 GGDPNATTSEAKEEMDSRSVFVGNV 366 GGDP+A+T+EAKE++D+RSV+VGNV Sbjct: 1336 GGDPSASTAEAKEQVDARSVYVGNV 1410 Score = 40.5 bits (82), Expect(5) = 5e-53 Identities = 15/21 (71%), Positives = 18/21 (85%) Frame = +1 / +3 Query: 91 AAAMEDEEHEVYGQEIPVDAE 153 A AM++EEHEVYGQEIP D + Sbjct: 72 ANAMDEEEHEVYGQEIPEDGD 134 Score = 33.1 bits (66), Expect(5) = 5e-53 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = +1 / +3 Query: 553 KVAPKRTNVPGLKQ 594 +VAPKRTNVPG+KQ Sbjct: 3876 QVAPKRTNVPGMKQ 3917 Score = 31.3 bits (62), Expect(5) = 5e-53 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +1 / +3 Query: 142 VDAEDVEMGAGGDDAAKL 195 +D DV+M +GGDDAAK+ Sbjct: 135 MDGADVDMASGGDDAAKV 188 Score = 90.4 bits (191), Expect(5) = 1e-28 Identities = 37/66 (56%), Positives = 47/66 (71%) Frame = -2 / -3 Query: 558 NLDLPTMKL*LTKLDSFLNSFCFNKFNISKTFRLPKLVSQDSHSVDGSARIKMLLHFFWS 379 +L L TM+ ++ S LN F F KF+ISKTF L KLVS D HS+D + R+KMLLHFFW Sbjct: 3771 HLYLTTMQFRFIQIQSLLNCFLFQKFHISKTFWLSKLVS*DRHSIDCATRLKMLLHFFWG 3592 Query: 378 ACIVNI 361 CI+N+ Sbjct: 3591 TCIINL 3574 Score = 40.9 bits (83), Expect(5) = 1e-28 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = -3 / -1 Query: 365 TFPTKTERESISSFASDVVALGSPP 291 TFPT T+R S SFAS V ALGSPP Sbjct: 1409 TFPTYTDRASTCSFASAVDALGSPP 1335 Score = 29.0 bits (57), Expect(5) = 1e-28 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = -3 / -2 Query: 593 CFNPGTLVRFGAT 555 CF PGTLV FGAT Sbjct: 3916 CFIPGTLVLFGAT 3878 Score = 27.6 bits (54), Expect(5) = 1e-28 Identities = 10/11 (90%), Positives = 10/11 (90%) Frame = -3 / -1 Query: 302 GSPPCISLATL 270 G PPCISLATL Sbjct: 386 GGPPCISLATL 354 Score = 26.3 bits (51), Expect(5) = 1e-28 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -1 / -3 Query: 682 NHHKDCKTVVDMASCRG 632 NH KDC VD AS +G Sbjct: 3951 NHDKDCIHAVDAASSQG 3901 Score = 74.8 bits (157), Expect(3) = 9e-17 Identities = 30/36 (83%), Positives = 31/36 (86%) Frame = -3 / -1 Query: 470 KPLGCPNLSVRIVTRLTVPQELKCCCTSSGVHA*ST 363 KP GCPNLSV+IVT LTVP KCCCTSSGVHA*ST Sbjct: 3683 KPFGCPNLSVKIVTLLTVPHA*KCCCTSSGVHA*ST 3576 Score = 32.7 bits (65), Expect(3) = 9e-17 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -2 / -3 Query: 363 ISNKNRTRIHLFFCFRCGRIRIS 295 ISN +R+ IHL C C R RIS Sbjct: 1407 ISNIHRSSIHLLLCLSCRRARIS 1339 Score = 26.3 bits (51), Expect(3) = 9e-17 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 / -1 Query: 594 LLQPRNVSPLRCNLDLPTMKL 532 LL PR++SPL C+L KL Sbjct: 3917 LLHPRDISPLWCHLLSTKQKL 3855 Score = 65.7 bits (137), Expect(3) = 1e-15 Identities = 33/64 (51%), Positives = 44/64 (68%) Frame = +3 / +3 Query: 366 *LCMHSRRSAAAF*FLRNRQPSDYPD*QVWAA*RFCLC*IC*SRSYSGSCQA**VRASWS 545 *LCM+ RRSAAAF + + Q SD +*QVW A RFCLC I +RS SG + *+ +WS Sbjct: 3579 *LCMYPRRSAAAFSSVWHSQ*SDDLN*QVWTAKRFCLCGISGTRSSSGGSEFE*I*TAWS 3758 Query: 546 ANQG 557 +++G Sbjct: 3759 SDKG 3770 Score = 32.7 bits (65), Expect(3) = 1e-15 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +1 / +1 Query: 265 QAKVAKEMQGGDPNATTS 318 QAKVAKEMQGG P T+ Sbjct: 349 QAKVAKEMQGGPPGVLTA 402 Score = 31.8 bits (63), Expect(3) = 1e-15 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +2 / +2 Query: 296 EILMRPHLKQKKRWILVLFLLEM 364 EIL R L+Q+ RW+L L +LEM Sbjct: 1340 EILARLQLRQRSRWMLDLCMLEM 1408 Score = 40.9 bits (83), Expect(2) = 0.007 Identities = 23/38 (60%), Positives = 24/38 (63%) Frame = -1 / -2 Query: 478 HKQNL*AAQTCQSG*SLG*RFRKN*NAAALLLECMHSQ 365 HKQNL A QTCQ SL * NAAALLL MH+Q Sbjct: 3691 HKQNLLAVQTCQLRSSLY*LCHTLENAAALLLGYMHNQ 3578 Score = 24.0 bits (46), Expect(2) = 0.007 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 / -2 Query: 364 HFQQKQNENPSLLLLQMWSH*DLRL 290 HFQ Q E+P L Q+ + *DL L Sbjct: 1408 HFQHTQIEHPPAPLPQL*TR*DLLL 1334
>LOC_Os03g03140:12003.t00200:unspliced-genomic RNA binding protein, putative, expressed| Length = 1936 Score = 55.1 bits (114), Expect = 7e-07 Identities = 22/72 (30%), Positives = 44/72 (61%) Frame = +1 / +1 Query: 346 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 525 S +VGN+ + T +++ F S + + + G +GF +V+F + E++++AV ++ Sbjct: 1330 SAYVGNLKWDVTETDLRDFFKSLKISSIRFAINKRTGDSRGFCHVDFEDDESLEKAVGMN 1509 Query: 526 ESELHGRQIKVA 561 +SEL GR IK++ Sbjct: 1510 QSELRGRPIKIS 1545
>LOC_Os04g42600:12004.t03808:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 7248 Score = 46.4 bits (95), Expect = 3e-04 Identities = 18/53 (33%), Positives = 31/53 (58%) Frame = +1 / +1 Query: 361 NVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 519 N+D A + + F++ G + + TD+ GQ KGF +V++ + EA Q A+K Sbjct: 2395 NLDKAIDHKTLHDTFSAFGNILSCKVATDEMGQSKGFGFVQYDKGEAAQSAIK 2553
>LOC_Os08g02390:12008.t00134:unspliced-genomic ribonucleoprotein, chloroplast precursor, putative, expressed| Length = 2478 Score = 45.1 bits (92), Expect = 8e-04 Identities = 14/36 (38%), Positives = 27/36 (75%) Frame = +1 / +1 Query: 349 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 456 ++VGN+ ++ P+E++++F+ CGTV +LTD+ G Sbjct: 1693 IYVGNIAWSVEPQELREYFSQCGTVVSTRLLTDRKG 1800
>LOC_Os10g33230:12010.t02625:unspliced-genomic heterogeneous nuclear ribonucleoprotein 27C, putative, expressed| Length = 5337 Score = 37.7 bits (76), Expect(2) = 0.002 Identities = 12/40 (30%), Positives = 24/40 (60%) Frame = +1 / +3 Query: 331 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 450 E D +F+G + + T E+++ HF + G V++ ++ DK Sbjct: 135 ESDQGKLFIGGISWETTEEKLRDHFAAYGDVSQAAVMRDK 254 Score = 24.0 bits (46), Expect(2) = 0.002 Identities = 7/21 (33%), Positives = 14/21 (66%) Frame = +1 / +3 Query: 454 GQPKGFAYVEFVEAEAIQEAV 516 G+P+GF +V F + ++ A+ Sbjct: 261 GRPRGFGFVVFSDPSSVDAAL 323
>LOC_Os04g39629:12004.t03532:unspliced-genomic RNA recognition motif family protein, expressed| Length = 7845 Score = 41.4 bits (84), Expect = 0.010 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = +1 / +3 Query: 364 VDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 486 V +A T + + +HFN G V + I+TD GQP G+ + F Sbjct: 6093 VHFAATKDALSRHFNKFGAVLKTLIVTDIAGQPTGYEFQVF 6215
>LOC_Os04g52200:12004.t04696:unspliced-genomic multiple RNA-binding domain-containing protein 1, putative, expressed| Length = 6619 Score = 32.2 bits (64), Expect(2) = 0.013 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = +1 / +2 Query: 334 MDSRSVFVGNVDYACTPEEVQQHFNS 411 + SRSVFV N+++ + E ++QHF++ Sbjct: 5012 LQSRSVFVKNLNFKTSDESLKQHFST 5089 Score = 32.2 bits (64), Expect(2) = 0.013 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / +1 Query: 448 KFGQPKGFAYVEFVEAEAIQEAVK 519 KFG +GFA+VEFV + Q A++ Sbjct: 5827 KFGSHRGFAFVEFVTKQEAQNALQ 5898
>LOC_Os07g03240:12007.t00214:unspliced-genomic ribonucleoprotein like protein, putative, expressed| Length = 3694 Score = 32.7 bits (65), Expect(2) = 0.034 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +1 / +2 Query: 337 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 450 + R +FVG + + E++ HF G V V ++ DK Sbjct: 152 ERRKLFVGGIPTSAQEAELRGHFGQYGAVRSVIVMRDK 265 Score = 24.4 bits (47), Expect(2) = 0.034 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +1 / +2 Query: 454 GQPKGFAYVEFVEAEAIQEAVKLSESELH 540 G +GF +VEF E E A+ E H Sbjct: 272 GHGRGFGFVEFEEEEDAARALGDGEHPRH 358 Score = 33.6 bits (67), Expect(2) = 0.69 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 / +2 Query: 340 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 447 S+ VF+G + T EE + +F S GTV V ++ D Sbjct: 1004 SKKVFIGGLRDNITEEEFKTYFESFGTVTDVVVIYD 1111 Score = 24.0 bits (46), Expect(2) = 0.69 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +1 / +1 Query: 124 YGQEIPVDAEDVEMGAGGDDAAKL 195 +G+E V D ++GAGG A L Sbjct: 148 WGEEEAVRGRDPDVGAGGGAAGPL 219
>LOC_Os09g10760:12009.t00867:unspliced-genomic plastid-specific 30S ribosomal protein 2, chloroplast precursor,| putative, expressed Length = 2232 Score = 39.1 bits (79), Expect = 0.050 Identities = 16/47 (34%), Positives = 28/47 (59%) Frame = +1 / +1 Query: 304 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 444 +++ EA EE+ +R ++VGN+ T +E+ F GTV R ++T Sbjct: 268 SSSVLEAPEEVAARKLYVGNIPRTVTNDELAAMFADHGTVERAEVVT 408
>LOC_Os09g37720:12009.t03246:unspliced-genomic RNA binding protein, putative, expressed| Length = 992 Score = 38.2 bits (77), Expect = 0.093 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 / +1 Query: 292 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 450 GG P +V+V N+D+A T ++ F+ G V RVT+L D+ Sbjct: 157 GGKPGGGGGSGGLAPSKSTVYVSNLDFALTNSDLHTLFSRFGRVARVTVLKDR 315
>LOC_Os06g38980:12006.t03596:unspliced-genomic polyadenylate-binding protein 3, putative, expressed| Length = 5401 Score = 38.2 bits (77), Expect = 0.093 Identities = 14/57 (24%), Positives = 33/57 (57%) Frame = +1 / +1 Query: 346 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 516 +VF+ N++ + + + F+S GT+ + TD G+ KG+ +++F + ++A+ Sbjct: 1291 NVFIKNLEPNIDNKSLYEMFSSFGTILSSKVATDFNGKSKGYGFIQFESESSAKDAI 1461
>LOC_Os04g54440:12004.t04916:unspliced-genomic RNA-binding protein AKIP1, putative, expressed| Length = 4049 Score = 26.3 bits (51), Expect(4) = 0.11 Identities = 10/35 (28%), Positives = 18/35 (51%) Frame = +1 / +2 Query: 454 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 558 G+PKGFA + E+ + A++ G+ + V Sbjct: 887 GKPKGFALFVYKSVESARRALEEPTRNFDGKMLNV 991 Score = 25.8 bits (50), Expect(4) = 0.11 Identities = 11/47 (23%), Positives = 23/47 (48%) Frame = +1 / +2 Query: 310 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 450 + S ++ + R +FVGNV + + ++F+ G + + DK Sbjct: 740 SASSSQPDNMQRKIFVGNVHADVDVDRLYEYFSQFGEIEEGPLGFDK 880 Score = 23.5 bits (45), Expect(4) = 0.11 Identities = 8/12 (66%), Positives = 8/12 (66%) Frame = +1 / +1 Query: 826 SLFHSGICDGCC 861 S F SG C GCC Sbjct: 1504 SSFTSGYCCGCC 1539 Score = 23.1 bits (44), Expect(4) = 0.11 Identities = 9/15 (60%), Positives = 10/15 (66%) Frame = +1 / +1 Query: 16 PRDTNPNRPRVRLGR 60 PR+ RPR RLGR Sbjct: 415 PREQEALRPRPRLGR 459
>LOC_Os01g56110:12001.t05020:unspliced-genomic DAZ-associated protein 1, putative| Length = 2939 Score = 37.7 bits (76), Expect = 0.13 Identities = 14/49 (28%), Positives = 27/49 (55%) Frame = +1 / +3 Query: 301 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 447 P+A + R +FVG + + T ++++++FN G VNR ++ D Sbjct: 2328 PSAGGPQLSPGDQKRKIFVGGLPVSATEKKLKEYFNKFGEVNRAIVVID 2474
>LOC_Os04g24170:12004.t02131:unspliced-genomic RNA recognition motif family protein, expressed| Length = 8627 Score = 36.8 bits (74), Expect = 0.24 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 / +2 Query: 364 VDYACTPEEVQQHFNSCGTVNRVTILTD 447 V +A T E + HF CGTV ++ ILTD Sbjct: 7256 VHFAATKEALSGHFMKCGTVLKINILTD 7339
>LOC_Os07g48980:12007.t04526:unspliced-genomic nicotianamine synthase 3, putative, expressed| Length = 1621 Score = 35.9 bits (72), Expect = 0.46 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -2 / +2 Query: 717 PARSAEPGSSPITTIRIVKRWWIWPHVGVAAIWVESSA 604 P P +SP TT +RWW+WP A W S + Sbjct: 683 PTSPTSPPTSPPTTSCSWRRWWVWPPRRRRAWWSTSGS 796
>LOC_Os05g02400:12005.t00139:unspliced-genomic RNA binding protein, putative, expressed| Length = 2853 Score = 35.9 bits (72), Expect = 0.46 Identities = 10/38 (26%), Positives = 24/38 (63%) Frame = +1 / +1 Query: 331 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 444 E +++ V+VG + Y + ++++ F +CG++ V +T Sbjct: 1132 EKNAKKVYVGGIPYYSSEDDIRSFFEACGSITSVDCMT 1245
>LOC_Os03g17030:12003.t01484:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 4373 Score = 35.9 bits (72), Expect = 0.46 Identities = 19/66 (28%), Positives = 32/66 (48%) Frame = +1 / +3 Query: 346 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 525 ++++ N+D T E ++ F+ G V V I+ G KGF +V F E+ + A + Sbjct: 1989 NLYMKNLDDDITEELIKLKFSQYGLVISVKIMKRDDGTSKGFGFVSFQNPESAKRAKESM 2168 Query: 526 ESELHG 543 L G Sbjct: 2169 NGMLLG 2186
>LOC_Os06g48310:12006.t04517:unspliced-genomic cleavage stimulation factor, 64 kDa subunit, putative| Length = 300 Score = 29.5 bits (58), Expect(2) = 0.59 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = +1 / +1 Query: 340 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 450 S VFVGNV Y T E++ G V + + D+ Sbjct: 25 SSVVFVGNVSYRATEAELRDACEEIGPVESLRLAVDE 135 Score = 23.5 bits (45), Expect(2) = 0.59 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 / +3 Query: 559 APKRTNVPGLKQPRGGRG 612 AP+R PGL++ RG G Sbjct: 243 APRRPRRPGLRRRRGRDG 296
>LOC_Os09g02700:12009.t00169:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 5156 Score = 35.0 bits (70), Expect = 0.86 Identities = 15/56 (26%), Positives = 28/56 (50%) Frame = +1 / +1 Query: 349 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 516 +F N+D + + + F G + + TD G+ KG+ +V++ EA Q A+ Sbjct: 1546 LFFQNLDKSIDNKALYDTFCVFGNILSCKVATDASGESKGYGFVQYERDEAAQAAI 1713
>LOC_Os09g15870:12009.t01375:unspliced-genomic hypothetical protein| Length = 300 Score = 30.9 bits (61), Expect(2) = 0.96 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = +3 / -1 Query: 675 WWLWESSQVPPTAQALL 725 WWLW S PPT A++ Sbjct: 99 WWLWAPSSPPPTPPAIV 49 Score = 22.6 bits (43), Expect(2) = 0.96 Identities = 5/12 (41%), Positives = 10/12 (83%) Frame = +2 / -3 Query: 305 MRPHLKQKKRWI 340 +RPH + ++RW+ Sbjct: 247 LRPHCRPERRWL 212
>LOC_Os06g10510:12006.t00929:unspliced-genomic expressed protein| Length = 1005 Score = 34.5 bits (69), Expect = 1.2 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 / +2 Query: 324 KRRDGFSFCFCWKC*LCMHSRRSAA 398 +RR + +C+CW C C SRRS A Sbjct: 530 RRRGAWRWCWCWCCSWCRTSRRSRA 604
>LOC_Os01g57066:12001.t06759:unspliced-genomic transmembrane protein 49, putative, expressed| Length = 6384 Score = 34.5 bits (69), Expect = 1.2 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 / -2 Query: 594 APRGPRIQPIWRPPLHEAISTTVLQSLWWLWESSQVPPTAQALLL 728 APR P QP P E S T SLWW+ ++++ P + + + Sbjct: 290 APRSPASQPDRTPDRDEPPSATPAASLWWVVDAARRFPVERLVFM 156 Score = 31.8 bits (63), Expect = 8.0 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -1 / +1 Query: 712 AVGGTWELSHNHHKDCKTVVDMASCRGGRHMG*ILGPLGAAS 587 + G S HHK V D S R G G*+ G LGA++ Sbjct: 172 STGNRRAASTTHHKLAAGVADGGSSRSGVRSG*LAGDLGAST 297
>LOC_Os10g42760:12010.t03500:unspliced-genomic expressed protein| Length = 1914 Score = 34.5 bits (69), Expect = 1.2 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +1 / -1 Query: 64 E*IGLGAQHAAAMEDEEHEVYGQEIPVDAEDVEMGAGGDDAAKLHEL 204 E +G+ A +E EHE PV+ E E G G D AA+ EL Sbjct: 450 EGVGVEAPEGHLVEQLEHERVDAPAPVEPEQEEEGVGADGAAEGAEL 310
>LOC_Os01g01640:12001.t00061:unspliced-genomic RER1A protein, putative, expressed| Length = 2513 Score = 26.7 bits (52), Expect(2) = 1.3 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +1 / -2 Query: 127 GQEIPVDAEDVEMGAGGDDAAKLHELD 207 G+E + E+V+ A GDD L E+D Sbjct: 385 GEEADEEVEEVDPEAVGDDVEALDEVD 305 Score = 24.9 bits (48), Expect(2) = 1.3 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 / -2 Query: 52 LGRGE*IGLGAQHAAAMEDEEHE 120 +G G +GLG H DEE E Sbjct: 427 VGGGSGVGLGVDHGGEEADEEVE 359
>LOC_Os08g22354:12008.t02014:unspliced-genomic polyadenylate-binding protein 2, putative, expressed| Length = 7457 Score = 34.1 bits (68), Expect = 1.6 Identities = 14/52 (26%), Positives = 27/52 (51%) Frame = +1 / +2 Query: 361 NVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 516 N+D + + + F+ G + + T+ G+ KG+ +V+F EA Q A+ Sbjct: 1415 NLDKSIDNKALYDTFSVFGNILSCKVATEMSGESKGYGFVQFELEEAAQNAI 1570
>LOC_Os05g38270:12005.t03369:unspliced-genomic expressed protein| Length = 4769 Score = 33.6 bits (67), Expect = 2.2 Identities = 17/42 (40%), Positives = 23/42 (54%) Frame = +1 / +1 Query: 835 HSGICDGCCVIYSVVLKNV*AITCISIMYYLT*QSSHRIYYA 960 HS + G ++YS L V I IS+++ L * S IYYA Sbjct: 2047 HSAVVTGQTLLYSTSLNQVPLIFFISLLFILK*CQSSFIYYA 2172
>LOC_Os05g14860:12005.t01260:unspliced-genomic ubiquitin ligase SINAT3, putative, expressed| Length = 5288 Score = 27.2 bits (53), Expect(2) = 2.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +3 / -2 Query: 552 QGCTEAD*RSWVEAAPRGPRIQPIWRPP 635 +G A R W EA RGP ++P PP Sbjct: 445 RGTRAARARWWREARRRGPHLRPPLPPP 362 Score = 23.1 bits (44), Expect(2) = 2.9 Identities = 5/15 (33%), Positives = 9/15 (60%) Frame = +3 / -1 Query: 675 WWLWESSQVPPTAQA 719 WW W ++ PP+ + Sbjct: 239 WWWWWCTEPPPSTSS 195
>LOC_Os08g42780:12008.t04007:unspliced-genomic hypothetical protein| Length = 342 Score = 33.1 bits (66), Expect = 3.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 / -2 Query: 618 PIWRPPLHEAISTTVLQSLWWLWESSQVPPT 710 P+ P H ++S++V+ LWW W + P T Sbjct: 233 PVVPPAPHISMSSSVVVGLWWWWWCAAAPAT 141
>LOC_Os11g46000:12011.t04125:unspliced-genomic von Willebrand factor type A domain containing protein, expressed| Length = 3870 Score = 33.1 bits (66), Expect = 3.1 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -2 / +3 Query: 732 TSIEGPARSAEPGSSPITTIRIVKRWWIWPHVG 634 T+ G A GS P R +RWW W +G Sbjct: 660 TTHRGAASGGSQGSCPHRPCRCARRWWWWNELG 758
>LOC_Os04g02870:12004.t00181:unspliced-genomic arginine/serine-rich splicing factor RSP41, putative, expressed| Length = 4409 Score = 33.1 bits (66), Expect = 3.1 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +1 / +3 Query: 322 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 432 AK + R VFVGN+DY E+ + F G ++R+ Sbjct: 234 AKAKAKMRPVFVGNLDYDTRHSELDRLFYRYGRIDRI 344
>LOC_Os03g06090:12003.t00480:unspliced-genomic nickel ion transporter, putative, expressed| Length = 3210 Score = 33.1 bits (66), Expect = 3.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 / -2 Query: 978 YFFFFFGIVYPMT*LLSQIVHNADACNGLHIF 883 Y FFF I Y ++*+++ IVHN H+F Sbjct: 935 YRFFFIPI*YTVS*IINMIVHNGAQIKSAHMF 840
>LOC_Os01g56120:12001.t05021:unspliced-genomic RNA recognition motif family protein| Length = 4388 Score = 33.1 bits (66), Expect = 3.1 Identities = 13/49 (26%), Positives = 28/49 (57%) Frame = +1 / +2 Query: 301 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 447 P+A + R +FV ++ + T +++++F++ G VNR ++TD Sbjct: 2378 PSAGGPQLSPGDQKRKIFVDSLPASVTK*QLKEYFSNFGEVNRAIVVTD 2524
>LOC_Os09g15580:12009.t01346:unspliced-genomic conserved hypothetical protein| Length = 3112 Score = 28.1 bits (55), Expect(2) = 3.5 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 / -3 Query: 309 DHI*SKRRDGFSFCFCWKC*LCMHSRR 389 D I*S+ + S C C C +C S+R Sbjct: 2876 DAI*SRNQSNHSTCRCKSCWICWRSKR 2796 Score = 26.7 bits (52), Expect(2) = 3.5 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = +3 / -1 Query: 576 RSWVEAAPRGPRIQPIWRPPLH 641 R W ++ RG R+QP PP H Sbjct: 1069 RRWPASSRRGNRLQPPQPPPPH 1004
>LOC_Os04g20474:12004.t01785:unspliced-genomic UDP-glycosyltransferase/ transferase, transferring glycosyl groups,| putative, expressed Length = 5210 Score = 24.9 bits (48), Expect(2) = 3.9 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 / -1 Query: 744 IRARTSIEGPARSAEPGSSPI 682 IRA +S +GPA G++PI Sbjct: 179 IRADSSSKGPAEQQRGGAAPI 117 Score = 24.9 bits (48), Expect(2) = 3.9 Identities = 5/10 (50%), Positives = 9/10 (90%) Frame = -2 / -1 Query: 666 VKRWWIWPHV 637 +++WWIWP + Sbjct: 80 LEQWWIWPAI 51
>LOC_Os01g23830:12001.t02109:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1332 Score = 32.7 bits (65), Expect = 4.2 Identities = 8/25 (32%), Positives = 15/25 (60%) Frame = +3 / -2 Query: 633 PLHEAISTTVLQSLWWLWESSQVPP 707 PL +++ + ++WW W S + PP Sbjct: 1196 PLFASVTVVAVMTIWWCWSSFEWPP 1122
>LOC_Os01g49930:12001.t04431:unspliced-genomic expressed protein| Length = 4643 Score = 32.7 bits (65), Expect = 4.2 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -2 / -2 Query: 561 CNLDLPTMKL*LTKLDSFLNSFCFNKFNISKTFRLPKLVSQDSHSVDGSARIKML 397 C DLP K + K S L S C+ K+ K+ L K S S+ SA + +L Sbjct: 1318 CTWDLPKKKYTILKNSSQLCSLCWGKYYFIKSSVLHKSTEGISCSIGTSATLHLL 1154
>LOC_Os02g30630:12002.t02756:unspliced-genomic acetolactate synthase III, chloroplast precursor, putative,| expressed Length = 2347 Score = 26.3 bits (51), Expect(3) = 5.3 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = -2 / -1 Query: 717 PARSAEPGSSPITTIRIVKRWWIWPHVGVAAIWVESSAPSG 595 P A P ++ + KRW + V+A W+ AP G Sbjct: 493 PDARAYPDAANASPCSWRKRWLVMTGERVSAWWISMDAPPG 371 Score = 23.5 bits (45), Expect(3) = 5.3 Identities = 9/33 (27%), Positives = 18/33 (54%) Frame = -1 / -3 Query: 916 *C*CM*WLTHFSTQQSRLHNNHHIFHCEIMKTR 818 *C C+ TH+ +Q + ++H H + +K + Sbjct: 2261 *CICLQKTTHYKPRQQEAN*DYHAKHIKQVKQK 2163 Score = 22.6 bits (43), Expect(3) = 5.3 Identities = 7/10 (70%), Positives = 7/10 (70%) Frame = -3 / -2 Query: 611 PRPPRGCFNP 582 P PPRGC P Sbjct: 339 PAPPRGCPRP 310
>LOC_Os09g31300:12009.t02771:unspliced-genomic helix-loop-helix DNA-binding domain containing protein, expressed| Length = 3010 Score = 32.2 bits (64), Expect = 5.8 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 / +1 Query: 401 CCCTSSGVHA*STFPTKTERESISSFASDVVALGSPP 291 C C+SSG+ A +T T + R S + A+ +L +PP Sbjct: 535 CSCSSSGLGARTTPRTPSSRASSPAMAATTTSLPAPP 645
>LOC_Os12g14630:12012.t01324:unspliced-genomic retrotransposon protein, putative, LINE subclass| Length = 5239 Score = 32.2 bits (64), Expect = 5.8 Identities = 8/14 (57%), Positives = 13/14 (92%) Frame = +1 / -1 Query: 838 SGICDGCCVIYSVV 879 SG CDGCC++Y+++ Sbjct: 2386 SGRCDGCCIVYAIL 2345
>LOC_Os06g40740:12006.t03769:unspliced-genomic expressed protein| Length = 4784 Score = 32.2 bits (64), Expect = 5.8 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +2 / -3 Query: 647 HIHHRFTILMVVMGELPGSADRAGPSIE 730 H HHR +++VV+G PG + G IE Sbjct: 399 HDHHRLLVVVVVLGLRPGPEELVGEVIE 316
>LOC_Os04g52190:12004.t04695:unspliced-genomic vacuolar sorting receptor 7 precursor, putative, expressed| Length = 4250 Score = 32.2 bits (64), Expect = 5.8 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 / -1 Query: 448 KFGQPKGFAYVEFVEAEAIQEAVK 519 KFG +GFA+VEFV + Q A++ Sbjct: 4247 KFGSHRGFAFVEFVTKQEAQNALQ 4176
>LOC_Os06g12780:12006.t01154:unspliced-genomic protease Do-like 9, putative, expressed| Length = 6283 Score = 24.9 bits (48), Expect(2) = 6.8 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = +3 / -2 Query: 522 **VRASWSANQGCTEAD*RSWVEAAPRGP 608 ** R WS C RSW A R P Sbjct: 639 **TRCCWSYIAACAATAARSWAPCARRTP 553 Score = 24.0 bits (46), Expect(2) = 6.8 Identities = 9/15 (60%), Positives = 9/15 (60%) Frame = +3 / -2 Query: 591 AAPRGPRIQPIWRPP 635 A PRGP P WR P Sbjct: 498 APPRGPPPPPSWRWP 454
>LOC_Os08g34060:12008.t03146:unspliced-genomic lipid binding protein, putative, expressed| Length = 16984 Score = 31.8 bits (63), Expect = 8.0 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +2 / -1 Query: 317 LKQKKRWILVLFLLEMLTMHA 379 LKQK +W+ +L+LL+++T A Sbjct: 7639 LKQKNKWLFLLYLLQVITKQA 7577
>LOC_Os03g63400:12003.t05557:unspliced-genomic transcription factor BTF3, putative, expressed| Length = 2247 Score = 31.8 bits (63), Expect = 8.0 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -2 / +3 Query: 399 LLHFFWSACIVNISNKNRTRIHLFFC 322 LL FFW +C V+I+N I L+ C Sbjct: 1563 LLFFFWFSCFVSIANYLLVAISLYSC 1640 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 313,232,836 Number of extensions: 4534355 Number of successful extensions: 20186 Number of sequences better than 10.0: 45 Length of query: 326 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 276 Effective length of database: 52,799,986 Effective search space: 14572796136 Effective search space used: 14572796136 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
