ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63f04 |
|---|---|
| Clone Library Name | barley_pub |
>Q84UQ1:RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 - Oryza sativa subsp.| japonica (Rice) Length = 1049 Score = 40.4 bits (93), Expect = 0.014 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%) Frame = -3 Query: 666 EKRHQRPQRRREDA------E*ADDVLREDLAREQEQVRRRGAHRSVVAAREPAQDVRQR 505 E+RH+ +R RE+ E + RE R +E+ R + R AA E +DV + Sbjct: 58 ERRHREKERDREERKAREREEREKEKERERARRREERDREERSRRREAAAEEEEEDVDRD 117 Query: 504 QEQPHRGAHHHIH 466 +++ R +HHH H Sbjct: 118 RKRRRRSSHHHHH 130
>Q00333:NPBL_COPCI Protein rad9 - Coprinus cinereus (Inky cap fungus) (Hormographiella| aspergillata) Length = 2157 Score = 34.3 bits (77), Expect = 1.0 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Frame = -1 Query: 266 SWSSMTR-SEPMTPPSIADDGCRSAPLSGSDRGATASDIPDMAAASVSLLSICSYGK 99 S+ MT S+P+TP R APL+ + R + AS +P A++S S+ S+ S K Sbjct: 372 SYKPMTLISQPLTPS-------RGAPLTPTSRASNASSVPTTASSSTSITSMSSSSK 421
>P94499:BRNQ_BACSU Branched-chain amino acid transport system carrier protein brnQ -| Bacillus subtilis Length = 440 Score = 33.1 bits (74), Expect = 2.2 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +1 Query: 241 SLRVIELQLVAFIMVFSMSGLVPLIDLAFPVVTTLYLIVLSRLAFPSLHSKLDDQXXXXX 420 S + I + L F + + GL LI ++ PV+ T+Y I +S + LHS + Sbjct: 317 SYKKIAVVLSVFSTLVANIGLTQLIKVSMPVLLTMYPIAISLIFLTFLHSVFKGK----- 371 Query: 421 XXXXQEIFRGSKLF 462 E+++GS LF Sbjct: 372 ----TEVYQGSLLF 381
>Q5ZIA2:MAP7_CHICK Ensconsin - Gallus gallus (Chicken)| Length = 725 Score = 32.7 bits (73), Expect = 2.9 Identities = 19/70 (27%), Positives = 36/70 (51%) Frame = -3 Query: 666 EKRHQRPQRRREDAE*ADDVLREDLAREQEQVRRRGAHRSVVAAREPAQDVRQRQEQPHR 487 E+R + R++ E + + E RE+E+ RR+ A R R+ A++ R+++E+ R Sbjct: 456 ERREREELERQKKEELSQRIAEERARREEEEARRQEAERK----RKDAEEEREKEERLRR 511 Query: 486 GAHHHIHLEQ 457 A E+ Sbjct: 512 QAEEREQKER 521
>Q9H3P7:GCP60_HUMAN Golgi resident protein GCP60 - Homo sapiens (Human)| Length = 528 Score = 32.3 bits (72), Expect = 3.8 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = -3 Query: 681 AAHGVEKRHQRPQRRREDAE*ADDVLREDLAREQEQVRRRGAHRSVVAAREPAQDVRQRQ 502 A+H +EK Q +R+ E E+ R +E+ R R RE + +R+ + Sbjct: 177 ASHKIEKEEQEKKRKEE----------EERRRREEEERERLQKEEEKRRREEEERLRREE 226 Query: 501 EQPHRGAHHHIHLEQ 457 E+ R + LEQ Sbjct: 227 EERRRIEEERLRLEQ 241
>P75509:Y266_MYCPN Uncharacterized protein MG127 homolog - Mycoplasma pneumoniae| Length = 145 Score = 32.0 bits (71), Expect = 5.0 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +1 Query: 874 HTRDEVYAKTAEDKRARDLSSLDDDGAAKSEVSKKAD 984 +T + Y K DKR RD+ SL +DG +S SK+AD Sbjct: 38 YTIENFYKKPISDKRFRDILSLSEDG-TESLFSKRAD 73
>P10627:TWIST_DROME Protein twist - Drosophila melanogaster (Fruit fly)| Length = 490 Score = 32.0 bits (71), Expect = 5.0 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = -1 Query: 311 SGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATA 162 S R D+E A S S M+P +ADDG + L GSD G A Sbjct: 290 SSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKA 339
>Q8I1G0:TWIST_DROER Protein twist - Drosophila erecta (Fruit fly)| Length = 490 Score = 32.0 bits (71), Expect = 5.0 Identities = 19/50 (38%), Positives = 23/50 (46%) Frame = -1 Query: 311 SGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATA 162 S R D+E A S S M+P +ADDG + L GSD G A Sbjct: 290 SSDRDDMEYARHNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKA 339
>Q07283:TRHY_HUMAN Trichohyalin - Homo sapiens (Human)| Length = 1898 Score = 32.0 bits (71), Expect = 5.0 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = -3 Query: 666 EKRHQRPQRRREDAE*ADDVLRED-LAREQEQVRRRGAHRSVVAAREPAQDVRQRQEQPH 490 E+R Q+ +RR + + RE L REQE+ RR R Q +R+ QE+ Sbjct: 326 ERREQQEERREQQLRREQEERREQQLRREQEEERREQQLRREQEEERREQQLRREQEEER 385 Query: 489 R 487 R Sbjct: 386 R 386
>A1KEN2:Y095_MYCBP UPF0182 protein BCG_0095 - Mycobacterium bovis (strain BCG / Paris| 1173P2) Length = 979 Score = 31.6 bits (70), Expect = 6.5 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +1 Query: 652 LVPLLYTVRRVFVIVDWVY-------DVWTNKLITRSAPVQHKAWVWFGRYLAVANLVYF 810 L LL+ R V + VDW++ VW L+TR A V A V G LA L Y Sbjct: 27 LALLLFGPRLVDIYVDWLWFGEVGFRSVWITVLLTRLAIVAAVALVVAGIVLAALLLAYR 86 Query: 811 SINLFV 828 S FV Sbjct: 87 SRPFFV 92
>Q7U2X8:Y065_MYCBO UPF0182 protein Mb0065 - Mycobacterium bovis| Length = 979 Score = 31.6 bits (70), Expect = 6.5 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +1 Query: 652 LVPLLYTVRRVFVIVDWVY-------DVWTNKLITRSAPVQHKAWVWFGRYLAVANLVYF 810 L LL+ R V + VDW++ VW L+TR A V A V G LA L Y Sbjct: 27 LALLLFGPRLVDIYVDWLWFGEVGFRSVWITVLLTRLAIVAAVALVVAGIVLAALLLAYR 86 Query: 811 SINLFV 828 S FV Sbjct: 87 SRPFFV 92
>O53609:Y064_MYCTU UPF0182 protein Rv0064/MT0070 - Mycobacterium tuberculosis| Length = 979 Score = 31.6 bits (70), Expect = 6.5 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = +1 Query: 652 LVPLLYTVRRVFVIVDWVY-------DVWTNKLITRSAPVQHKAWVWFGRYLAVANLVYF 810 L LL+ R V + VDW++ VW L+TR A V A V G LA L Y Sbjct: 27 LALLLFGPRLVDIYVDWLWFGEVGFRSVWITVLLTRLAIVAAVALVVAGIVLAALLLAYR 86 Query: 811 SINLFV 828 S FV Sbjct: 87 SRPFFV 92
>P03865:RLX2_STAAU Protein rlx - Staphylococcus aureus| Length = 315 Score = 31.6 bits (70), Expect = 6.5 Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 6/83 (7%) Frame = -3 Query: 687 EYAAHGVEKRHQRPQRRREDAE*ADD--VLREDLAREQEQVRRRGAHRS----VVAAREP 526 EY ++ H+R Q+++ + E AD+ + + + + EQ+++R R+ ++ Sbjct: 226 EYEKGAIDHEHERHQKQQREPEYADEFKINWDAVEQHTEQLKQRRVERAQETKQAHSKIS 285 Query: 525 AQDVRQRQEQPHRGAHHHIHLEQ 457 ++D R+ + Q R ++I +E+ Sbjct: 286 SRDTRESENQRERAKGNNIRIER 308
>Q32KG4:RGAG1_MOUSE Retrotransposon gag domain-containing protein 1 - Mus musculus| (Mouse) Length = 1339 Score = 31.2 bits (69), Expect = 8.5 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%) Frame = -1 Query: 314 MSGTRPDIEKTMMKATSWSSMTRSEPMTPPSIADDGCRSAPLSGSDRGATAS---DIPDM 144 MSGT + +++ + S T ++P PP +G + +SGSD +S + Sbjct: 272 MSGTDSEAISSLIMSALASGETPAQPTNPPE--SEGIPTVLMSGSDSAVMSSLPMPVSGS 329 Query: 143 AAASVSLLSICSYGKCAT 90 A LLSI G+ AT Sbjct: 330 GAMPTPLLSIPDAGEIAT 347 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 146,780,431 Number of extensions: 2860218 Number of successful extensions: 10653 Number of sequences better than 10.0: 14 Number of HSP's gapped: 10561 Number of HSP's successfully gapped: 14 Length of query: 386 Length of database: 100,686,439 Length adjustment: 115 Effective length of query: 271 Effective length of database: 69,142,514 Effective search space: 18737621294 Effective search space used: 18737621294 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
