ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63f04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835058.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN007O14, full insert sequence Length = 1158 Score = 272 bits (137), Expect = 3e-69 Identities = 253/291 (86%), Gaps = 3/291 (1%) Strand = Plus / Plus Query: 430 tcccaggagatcttccgcggaagcaagctgttccaggtgtatgtggtgatgggcaccacg 489 ||||| |||||||||||||| |||| | |||||||| ||| |||||| |||| || ||| Sbjct: 437 tcccaagagatcttccgcggcagcacgtggttccaggcgtacgtggtgctggggacgacg 496 Query: 490 gtggggctgttcctgccgctggcgcacgtcctgggcgggttcgcgcgcggcgacgacgct 549 ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 497 gtggggctgttcctgccgctggcgcacgtgctgggcggattcgcgcgcggggacgacggc 556 Query: 550 gcggtgcgctccgcgacgccgcacctgttcctgctctcgtgccagatcctcacggagaac 609 |||||| | || |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 557 gcggtgaggtcggcgacgccgcacctgttcctcctctcgtgccagatcctcaccgagaac 616 Query: 610 atcgtcggctcactcggcgtc---ttctcgccgccgctgagggcgctggtgccgcttctc 666 | |||||| | || |||| | |||||||||||| | ||||||||||||||||| ||| Sbjct: 617 gtggtcggcgccctgggcgccgcgttctcgccgccggtcagggcgctggtgccgctgctc 676 Query: 667 tacaccgtgcgccgcgtattcgtcatcgtcgactgggtctacgacgtgtgg 717 ||||| ||||||||||| |||||| |||||||||||| ||||||| |||| Sbjct: 677 tacacggtgcgccgcgtgttcgtcgccgtcgactgggtgtacgacgcgtgg 727 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 234 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 293 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 294 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 353 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 354 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 399 Score = 145 bits (73), Expect = 4e-31 Identities = 133/153 (86%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 767 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 826 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||||| |||||||||||||||| || | Sbjct: 827 ctcctcgtcttcctcattcccaagttcctcccccgcgccttcgagaagtacttccgcatg 886 Query: 880 cgcgacgaggtgtatgcgaagacggcggaggac 912 |||||||||||||| || ||||| || |||||| Sbjct: 887 cgcgacgaggtgtacgccaagaccgccgaggac 919 Score = 42.1 bits (21), Expect = 4.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 177 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 143 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 187
>dbj|AK240915.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065037K20, full insert sequence Length = 1074 Score = 272 bits (137), Expect = 3e-69 Identities = 253/291 (86%), Gaps = 3/291 (1%) Strand = Plus / Plus Query: 430 tcccaggagatcttccgcggaagcaagctgttccaggtgtatgtggtgatgggcaccacg 489 ||||| |||||||||||||| |||| | |||||||| ||| |||||| |||| || ||| Sbjct: 372 tcccaagagatcttccgcggcagcacgtggttccaggcgtacgtggtgctggggacgacg 431 Query: 490 gtggggctgttcctgccgctggcgcacgtcctgggcgggttcgcgcgcggcgacgacgct 549 ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 432 gtggggctgttcctgccgctggcgcacgtgctgggcggattcgcgcgcggggacgacggc 491 Query: 550 gcggtgcgctccgcgacgccgcacctgttcctgctctcgtgccagatcctcacggagaac 609 |||||| | || |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 492 gcggtgaggtcggcgacgccgcacctgttcctcctctcgtgccagatcctcaccgagaac 551 Query: 610 atcgtcggctcactcggcgtc---ttctcgccgccgctgagggcgctggtgccgcttctc 666 | |||||| | || |||| | |||||||||||| | ||||||||||||||||| ||| Sbjct: 552 gtggtcggcgccctgggcgccgcgttctcgccgccggtcagggcgctggtgccgctgctc 611 Query: 667 tacaccgtgcgccgcgtattcgtcatcgtcgactgggtctacgacgtgtgg 717 ||||| ||||||||||| |||||| |||||||||||| ||||||| |||| Sbjct: 612 tacacggtgcgccgcgtgttcgtcgccgtcgactgggtgtacgacgcgtgg 662 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 169 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 228 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 229 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 288 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 289 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 334 Score = 131 bits (66), Expect = 6e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 702 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 761 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||| | |||||||||||||||| || | Sbjct: 762 ctcctcgtcttcctcattcccaagttcctcccccgctccttcgagaagtacttccgcatg 821 Query: 880 cgcgacgaggtgta 893 |||||||||||||| Sbjct: 822 cgcgacgaggtgta 835 Score = 42.1 bits (21), Expect = 4.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 177 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 78 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 122
>ref|NM_001059158.1| Oryza sativa (japonica cultivar-group) Os04g0386700 (Os04g0386700) mRNA, complete cds Length = 825 Score = 272 bits (137), Expect = 3e-69 Identities = 253/291 (86%), Gaps = 3/291 (1%) Strand = Plus / Plus Query: 430 tcccaggagatcttccgcggaagcaagctgttccaggtgtatgtggtgatgggcaccacg 489 ||||| |||||||||||||| |||| | |||||||| ||| |||||| |||| || ||| Sbjct: 283 tcccaagagatcttccgcggcagcacgtggttccaggcgtacgtggtgctggggacgacg 342 Query: 490 gtggggctgttcctgccgctggcgcacgtcctgggcgggttcgcgcgcggcgacgacgct 549 ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| Sbjct: 343 gtggggctgttcctgccgctggcgcacgtgctgggcggattcgcgcgcggggacgacggc 402 Query: 550 gcggtgcgctccgcgacgccgcacctgttcctgctctcgtgccagatcctcacggagaac 609 |||||| | || |||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 403 gcggtgaggtcggcgacgccgcacctgttcctcctctcgtgccagatcctcaccgagaac 462 Query: 610 atcgtcggctcactcggcgtc---ttctcgccgccgctgagggcgctggtgccgcttctc 666 | |||||| | || |||| | |||||||||||| | ||||||||||||||||| ||| Sbjct: 463 gtggtcggcgccctgggcgccgcgttctcgccgccggtcagggcgctggtgccgctgctc 522 Query: 667 tacaccgtgcgccgcgtattcgtcatcgtcgactgggtctacgacgtgtgg 717 ||||| ||||||||||| |||||| |||||||||||| ||||||| |||| Sbjct: 523 tacacggtgcgccgcgtgttcgtcgccgtcgactgggtgtacgacgcgtgg 573 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 80 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 139 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 140 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 199 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 200 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 245 Score = 131 bits (66), Expect = 6e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 613 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 672 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||| | |||||||||||||||| || | Sbjct: 673 ctcctcgtcttcctcattcccaagttcctcccccgctccttcgagaagtacttccgcatg 732 Query: 880 cgcgacgaggtgta 893 |||||||||||||| Sbjct: 733 cgcgacgaggtgta 746
>emb|CR855115.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence Length = 80434 Score = 254 bits (128), Expect = 6e-64 Identities = 229/262 (87%), Gaps = 3/262 (1%) Strand = Plus / Plus Query: 459 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 518 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 45881 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 45940 Query: 519 cctgggcgggttcgcgcgcggcgacgacgctgcggtgcgctccgcgacgccgcacctgtt 578 |||||||| ||||||||||| ||||||| |||||| | || ||||||||||||||||| Sbjct: 45941 gctgggcggattcgcgcgcggggacgacggcgcggtgaggtcggcgacgccgcacctgtt 46000 Query: 579 cctgctctcgtgccagatcctcacggagaacatcgtcggctcactcggcgtc---ttctc 635 ||| |||||||||||||||||||| |||||| | |||||| | || |||| | ||||| Sbjct: 46001 cctcctctcgtgccagatcctcaccgagaacgtggtcggcgccctgggcgccgcgttctc 46060 Query: 636 gccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtcatcgt 695 ||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 46061 gccgccggtcagggcgctggtgccgctgctctacacggtgcgccgcgtgttcgtcgccgt 46120 Query: 696 cgactgggtctacgacgtgtgg 717 ||||||||| ||||||| |||| Sbjct: 46121 cgactgggtgtacgacgcgtgg 46142 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 45563 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 45622 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 45623 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 45682 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 45683 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 45728 Score = 145 bits (73), Expect = 4e-31 Identities = 133/153 (86%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 46182 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 46241 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||||| |||||||||||||||| || | Sbjct: 46242 ctcctcgtcttcctcattcccaagttcctcccccgcgccttcgagaagtacttccgcatg 46301 Query: 880 cgcgacgaggtgtatgcgaagacggcggaggac 912 |||||||||||||| || ||||| || |||||| Sbjct: 46302 cgcgacgaggtgtacgccaagaccgccgaggac 46334 Score = 42.1 bits (21), Expect = 4.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 177 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 45472 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 45516
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 254 bits (128), Expect = 6e-64 Identities = 229/262 (87%), Gaps = 3/262 (1%) Strand = Plus / Plus Query: 459 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 518 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 19005857 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 19005916 Query: 519 cctgggcgggttcgcgcgcggcgacgacgctgcggtgcgctccgcgacgccgcacctgtt 578 |||||||| ||||||||||| ||||||| |||||| | || ||||||||||||||||| Sbjct: 19005917 gctgggcggattcgcgcgcggggacgacggcgcggtgaggtcggcgacgccgcacctgtt 19005976 Query: 579 cctgctctcgtgccagatcctcacggagaacatcgtcggctcactcggcgtc---ttctc 635 ||| |||||||||||||||||||| |||||| | |||||| | || |||| | ||||| Sbjct: 19005977 cctcctctcgtgccagatcctcaccgagaacgtggtcggcgccctgggcgccgcgttctc 19006036 Query: 636 gccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtcatcgt 695 ||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 19006037 gccgccggtcagggcgctggtgccgctgctctacacggtgcgccgcgtgttcgtcgccgt 19006096 Query: 696 cgactgggtctacgacgtgtgg 717 ||||||||| ||||||| |||| Sbjct: 19006097 cgactgggtgtacgacgcgtgg 19006118 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 19005539 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 19005598 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 19005599 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 19005658 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 19005659 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 19005704 Score = 131 bits (66), Expect = 6e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 19006158 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 19006217 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||| | |||||||||||||||| || | Sbjct: 19006218 ctcctcgtcttcctcattcccaagttcctcccccgctccttcgagaagtacttccgcatg 19006277 Query: 880 cgcgacgaggtgta 893 |||||||||||||| Sbjct: 19006278 cgcgacgaggtgta 19006291 Score = 73.8 bits (37), Expect = 1e-09 Identities = 100/121 (82%), Gaps = 5/121 (4%) Strand = Plus / Plus Query: 574 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggctcact-----cggcg 628 ||||| || |||||||||||||||||||| |||||| | |||||| | || ||||| Sbjct: 17126886 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggcaccctgggcgcggcg 17126945 Query: 629 tcttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcg 688 |||| ||||||| |||||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct: 17126946 cgttctggccgccggtgagggcgctggtgtcgctgctctacacggtgcgtcgcgtgttcg 17127005 Query: 689 t 689 | Sbjct: 17127006 t 17127006 Score = 42.1 bits (21), Expect = 4.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 177 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 19005448 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 19005492 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcccgctcatcgacctcgcct 325 ||||||||||||||||||||| Sbjct: 29304945 tcccgctcatcgacctcgcct 29304965
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 254 bits (128), Expect = 6e-64 Identities = 229/262 (87%), Gaps = 3/262 (1%) Strand = Plus / Plus Query: 459 gttccaggtgtatgtggtgatgggcaccacggtggggctgttcctgccgctggcgcacgt 518 |||||||| ||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 97782 gttccaggcgtacgtggtgctggggacgacggtggggctgttcctgccgctggcgcacgt 97841 Query: 519 cctgggcgggttcgcgcgcggcgacgacgctgcggtgcgctccgcgacgccgcacctgtt 578 |||||||| ||||||||||| ||||||| |||||| | || ||||||||||||||||| Sbjct: 97842 gctgggcggattcgcgcgcggggacgacggcgcggtgaggtcggcgacgccgcacctgtt 97901 Query: 579 cctgctctcgtgccagatcctcacggagaacatcgtcggctcactcggcgtc---ttctc 635 ||| |||||||||||||||||||| |||||| | |||||| | || |||| | ||||| Sbjct: 97902 cctcctctcgtgccagatcctcaccgagaacgtggtcggcgccctgggcgccgcgttctc 97961 Query: 636 gccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtcatcgt 695 ||||||| | ||||||||||||||||| |||||||| ||||||||||| |||||| ||| Sbjct: 97962 gccgccggtcagggcgctggtgccgctgctctacacggtgcgccgcgtgttcgtcgccgt 98021 Query: 696 cgactgggtctacgacgtgtgg 717 ||||||||| ||||||| |||| Sbjct: 98022 cgactgggtgtacgacgcgtgg 98043 Score = 218 bits (110), Expect = 3e-53 Identities = 152/166 (91%) Strand = Plus / Plus Query: 212 cgtcggcgatgctggggggcgtcatgggctcgctccgcgtcatcgagctccagctcgtcg 271 ||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 97464 cgtcgacgatgctgggcggcgtgatggggtcgctccgcgtcatcgagctccagctcgtcg 97523 Query: 272 ccttcatcatggtcttctcgatgtcaggcctcgtcccgctcatcgacctcgccttcccgg 331 ||||||||||||||||||| || |||||||||||||||||||||||||||||||| | Sbjct: 97524 ccttcatcatggtcttctccgcctccggcctcgtcccgctcatcgacctcgccttccccg 97583 Query: 332 tcgtcaccaccctctacctcatcgtcctctcccgcctcgccttccc 377 ||| |||||||||||||||| || |||||||||||||| ||||||| Sbjct: 97584 tcgccaccaccctctacctcctcctcctctcccgcctctccttccc 97629 Score = 131 bits (66), Expect = 6e-27 Identities = 117/134 (87%) Strand = Plus / Plus Query: 760 gcctgggtctggttcggcaggtacctcgcggtggcgaacctggtctacttctccatcaac 819 |||||| | ||||||||| | |||||||| || || ||||| ||||||||||||| |||| Sbjct: 98083 gcctggatgtggttcggccgctacctcgccgtcgccaacctcgtctacttctccaccaac 98142 Query: 820 ctgttcgtcttcctgatccccaagttcctcccccgcgcgttcgagaagtacttccacacg 879 || |||||||||| || |||||||||||||||||| | |||||||||||||||| || | Sbjct: 98143 ctcctcgtcttcctcattcccaagttcctcccccgctccttcgagaagtacttccgcatg 98202 Query: 880 cgcgacgaggtgta 893 |||||||||||||| Sbjct: 98203 cgcgacgaggtgta 98216 Score = 42.1 bits (21), Expect = 4.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 133 gaggcagctgccatgtcgggaatatcgctggccgtggcgccgcgg 177 ||||| || ||||||||||| || |||||||| |||| ||||||| Sbjct: 97373 gaggcggcggccatgtcggggatgtcgctggcggtggggccgcgg 97417
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 83.8 bits (42), Expect = 1e-12 Identities = 66/74 (89%) Strand = Plus / Minus Query: 631 ttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtc 690 |||||||| | | ||||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct: 4220480 ttctcgccactggtgagggcactggtgccgctgctctacacggtgcgccgcgtgttcgtc 4220421 Query: 691 atcgtcgactgggt 704 ||||| |||||||| Sbjct: 4220420 atcgtggactgggt 4220407 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 ggagcggcagccgtcgtcggcg 219 |||||||||||||||||||||| Sbjct: 4168143 ggagcggcagccgtcgtcggcg 4168122
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 83.8 bits (42), Expect = 1e-12 Identities = 66/74 (89%) Strand = Plus / Plus Query: 631 ttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtc 690 ||||||| |||| ||||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct: 20680918 ttctcgctgccggtgagggcactggtgccgctgctctacacggtgcgccgcgtgttcgtc 20680977 Query: 691 atcgtcgactgggt 704 |||| |||||||| Sbjct: 20680978 gtcgtggactgggt 20680991
>gb|AC108871.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0077M24, complete sequence Length = 128920 Score = 83.8 bits (42), Expect = 1e-12 Identities = 66/74 (89%) Strand = Plus / Plus Query: 631 ttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtc 690 ||||||| |||| ||||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct: 115926 ttctcgctgccggtgagggcactggtgccgctgctctacacggtgcgccgcgtgttcgtc 115985 Query: 691 atcgtcgactgggt 704 |||| |||||||| Sbjct: 115986 gtcgtggactgggt 115999
>emb|AL954158.4|CNS08CCW Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0089D09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104999 Score = 83.8 bits (42), Expect = 1e-12 Identities = 66/74 (89%) Strand = Plus / Plus Query: 631 ttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcgtc 690 |||||||| | | ||||||| ||||||||||| |||||||| ||||||||||| |||||| Sbjct: 63303 ttctcgccactggtgagggcactggtgccgctgctctacacggtgcgccgcgtgttcgtc 63362 Query: 691 atcgtcgactgggt 704 ||||| |||||||| Sbjct: 63363 atcgtggactgggt 63376
>emb|CR855124.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0105P02, complete sequence Length = 98540 Score = 73.8 bits (37), Expect = 1e-09 Identities = 100/121 (82%), Gaps = 5/121 (4%) Strand = Plus / Plus Query: 574 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggctcact-----cggcg 628 ||||| || |||||||||||||||||||| |||||| | |||||| | || ||||| Sbjct: 91980 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggcaccctgggcgcggcg 92039 Query: 629 tcttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcg 688 |||| ||||||| |||||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct: 92040 cgttctggccgccggtgagggcgctggtgtcgctgctctacacggtgcgtcgcgtgttcg 92099 Query: 689 t 689 | Sbjct: 92100 t 92100
>emb|CR855088.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0104J13, complete sequence Length = 82577 Score = 73.8 bits (37), Expect = 1e-09 Identities = 100/121 (82%), Gaps = 5/121 (4%) Strand = Plus / Plus Query: 574 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggctcact-----cggcg 628 ||||| || |||||||||||||||||||| |||||| | |||||| | || ||||| Sbjct: 9746 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggcaccctgggcgcggcg 9805 Query: 629 tcttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcg 688 |||| ||||||| |||||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct: 9806 cgttctggccgccggtgagggcgctggtgtcgctgctctacacggtgcgtcgcgtgttcg 9865 Query: 689 t 689 | Sbjct: 9866 t 9866
>emb|AL662956.3|OSJN00159 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018J19, complete sequence Length = 169559 Score = 73.8 bits (37), Expect = 1e-09 Identities = 100/121 (82%), Gaps = 5/121 (4%) Strand = Plus / Plus Query: 574 ctgttcctgctctcgtgccagatcctcacggagaacatcgtcggctcact-----cggcg 628 ||||| || |||||||||||||||||||| |||||| | |||||| | || ||||| Sbjct: 71183 ctgtttctcctctcgtgccagatcctcaccgagaacgtggtcggcaccctgggcgcggcg 71242 Query: 629 tcttctcgccgccgctgagggcgctggtgccgcttctctacaccgtgcgccgcgtattcg 688 |||| ||||||| |||||||||||||| |||| |||||||| ||||| ||||| |||| Sbjct: 71243 cgttctggccgccggtgagggcgctggtgtcgctgctctacacggtgcgtcgcgtgttcg 71302 Query: 689 t 689 | Sbjct: 71303 t 71303
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 50.1 bits (25), Expect = 0.018 Identities = 25/25 (100%) Strand = Plus / Plus Query: 495 gctgttcctgccgctggcgcacgtc 519 ||||||||||||||||||||||||| Sbjct: 2265654 gctgttcctgccgctggcgcacgtc 2265678 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 8396209 gtcgtcaccaccctctacctc 8396189
>gb|AC185350.5| Nasonia vitripennis BAC NV_Bb-46A6 (Clemson University Genomics Nasonia vitripennis BAC Library) complete sequence Length = 113048 Score = 44.1 bits (22), Expect = 1.1 Identities = 25/26 (96%) Strand = Plus / Plus Query: 533 cgcgcggcgacgacgctgcggtgcgc 558 |||| ||||||||||||||||||||| Sbjct: 52629 cgcggggcgacgacgctgcggtgcgc 52654
>gb|AC127350.3| Mus musculus BAC clone RP23-64P14 from chromosome 18, complete sequence Length = 190228 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 tgccttcctctgctttcctctc 37 |||||||||||||||||||||| Sbjct: 165180 tgccttcctctgctttcctctc 165159
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 249 cgtcatcgagctccagctcgtc 270 |||||||||||||||||||||| Sbjct: 5944913 cgtcatcgagctccagctcgtc 5944934
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 816 caacctgttcgtcttcctgatc 837 |||||||||||||||||||||| Sbjct: 4536159 caacctgttcgtcttcctgatc 4536138 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 497 tgttcctgccgctggcgcacgt 518 |||||||||||||||||||||| Sbjct: 4913886 tgttcctgccgctggcgcacgt 4913907
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 ggagcggcagccgtcgtcggcg 219 |||||||||||||||||||||| Sbjct: 110539 ggagcggcagccgtcgtcggcg 110518
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 495 gctgttcctgccgctggcgcac 516 |||||||||||||||||||||| Sbjct: 447252 gctgttcctgccgctggcgcac 447273
>dbj|AP004606.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-138O22, complete sequences Length = 173185 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 455 agctgttccaggtgtatgtggt 476 |||||||||||||||||||||| Sbjct: 78658 agctgttccaggtgtatgtggt 78637
>ref|XM_001229114.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_02599) mRNA, complete cds Length = 3660 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 gtcttctcgccgccgctgagg 648 ||||||||||||||||||||| Sbjct: 3389 gtcttctcgccgccgctgagg 3369
>ref|NM_001068889.1| Oryza sativa (japonica cultivar-group) Os08g0535200 (Os08g0535200) mRNA, complete cds Length = 1516 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>ref|NM_001060186.1| Oryza sativa (japonica cultivar-group) Os04g0581000 (Os04g0581000) mRNA, complete cds Length = 1361 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcccgctcatcgacctcgcct 325 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 495 gctgttcctgccgctggcgcacgtc 519 ||||||||| ||||||||||||||| Sbjct: 3467526 gctgttccttccgctggcgcacgtc 3467550
>gb|DQ421396.1| Oryza sativa (indica cultivar-group) cultivar IR24 disease resistant allele XA13 (Xa13) gene, complete cds Length = 4454 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 3088 gtcgtcaccaccctctacctc 3108
>gb|DQ421395.1| Oryza sativa (indica cultivar-group) cultivar IR64 disease resistant allele XA13 (Xa13) gene, complete cds Length = 4454 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 3088 gtcgtcaccaccctctacctc 3108
>gb|DQ421394.1| Oryza sativa (indica cultivar-group) cultivar IRBB13 disease resistant allele xa13 (xa13) gene, complete cds Length = 4654 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 3288 gtcgtcaccaccctctacctc 3308
>gb|AC185140.5| Nasonia giraulti BAC NG_Bb-89M15 (Clemson University Genomics Nasonia giraulti BAC Library) complete sequence Length = 103696 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 538 ggcgacgacgctgcggtgcgc 558 ||||||||||||||||||||| Sbjct: 102796 ggcgacgacgctgcggtgcgc 102776
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 26719880 gtcgtcaccaccctctacctc 26719860
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 348 cctcatcgtcctctcccgcctcgcc 372 ||||||| ||||||||||||||||| Sbjct: 3533253 cctcatcctcctctcccgcctcgcc 3533229
>dbj|AB210848.1| Lemna gibba LgGI H1 mRNA for GI homologue, complete cds Length = 3936 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 255 cgagctccagctcgtcgccttcatc 279 |||||||||||||||| |||||||| Sbjct: 2307 cgagctccagctcgtccccttcatc 2331
>ref|NM_001021140.1| Schizosaccharomyces pombe 972h- glucoamylase (SPBC354.10), partial mRNA Length = 2892 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 gcctcgccttcccttcgctcc 385 ||||||||||||||||||||| Sbjct: 150 gcctcgccttcccttcgctcc 130
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 catcgacctcgccttcccggt 332 ||||||||||||||||||||| Sbjct: 67420 catcgacctcgccttcccggt 67440
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcccgctcatcgacctcgcct 325 ||||||||||||||||||||| Sbjct: 107991 tcccgctcatcgacctcgcct 108011
>emb|AL022071.1|SPBC354 S.pombe chromosome II cosmid c354 Length = 44124 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 365 gcctcgccttcccttcgctcc 385 ||||||||||||||||||||| Sbjct: 26893 gcctcgccttcccttcgctcc 26873
>dbj|AP005528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0702C09 Length = 138203 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 131407 gtcgtcaccaccctctacctc 131387
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 gatgctggggggcgtcatgggctcg 243 ||||||||| ||||||||||||||| Sbjct: 6714248 gatgctgggcggcgtcatgggctcg 6714224
>dbj|AP005439.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24 Length = 186132 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 63222 gtcgtcaccaccctctacctc 63202
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 4.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 348 cctcatcgtcctctcccgcctcgcc 372 ||||||| ||||||||||||||||| Sbjct: 50795 cctcatcctcctctcccgcctcgcc 50771
>gb|AF230488.1|AF230488 Streptomyces coelicolor A3(2) F23a (f23a) gene, complete cds; and F23b (f23b) gene, partial cds Length = 1270 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 312 catcgacctcgccttcccggt 332 ||||||||||||||||||||| Sbjct: 847 catcgacctcgccttcccggt 827
>dbj|AK106127.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-F06, full insert sequence Length = 1500 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 532 gtcgtcaccaccctctacctc 552
>dbj|AK104142.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E07, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcccgctcatcgacctcgcct 325 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211
>dbj|AK070510.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056B21, full insert sequence Length = 1517 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 331 gtcgtcaccaccctctacctc 351 ||||||||||||||||||||| Sbjct: 533 gtcgtcaccaccctctacctc 553
>dbj|AK061337.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-C05, full insert sequence Length = 1361 Score = 42.1 bits (21), Expect = 4.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 tcccgctcatcgacctcgcct 325 ||||||||||||||||||||| Sbjct: 191 tcccgctcatcgacctcgcct 211 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 156,145,258 Number of extensions: 8448269 Number of successful extensions: 188635 Number of sequences better than 10.0: 45 Number of HSP's gapped: 188623 Number of HSP's successfully gapped: 71 Length of query: 1160 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1137 Effective length of database: 18,503,978,556 Effective search space: 21039023618172 Effective search space used: 21039023618172 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
