| Clone Name | FLbaf63e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK240803.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065005A21, full insert sequence Length = 1254 Score = 291 bits (147), Expect = 2e-75 Identities = 246/279 (88%) Strand = Plus / Plus Query: 285 aagggagcagcaaaagctgaatttactgacatgccagcgcttcgtgggaaggattatgga 344 ||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||||||| Sbjct: 242 aagggggcagcaaaagctgagtttgctgatatgcctgcgcttcgtgggaaggattatgga 301 Query: 345 aagacaaaaatgagttatccagattacactgaaacagaatcaggcctccaatacaaggac 404 ||||| || |||| || |||||||||||||||||||||||||| || || ||||||||| Sbjct: 302 aagacgaagatgaagtacccagattacactgaaacagaatcaggtcttcagtacaaggac 361 Query: 405 ttgcgggttggagaaggtccatcccctaagaagggagagacagtagtgattgattgggat 464 ||| | ||||| || || || || || ||||| || || ||||||||| ||||||||||| Sbjct: 362 ttgagagttggtgatgggccttctccaaagaaaggggaaacagtagtggttgattgggat 421 Query: 465 ggatacacaattggatactacggtcggatttttgaagctcgaaacaagaccaaaggtggt 524 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct: 422 ggctacacaattggatactatggtcgcatttttgaagctcgaaacaagaccaaaggtggt 481 Query: 525 tccttcgagggtggcgataaagaattcttcaagtttaag 563 ||||| |||||||| |||||||| ||||| || |||||| Sbjct: 482 tcctttgagggtggtgataaagacttctttaaatttaag 520 Score = 232 bits (117), Expect = 2e-57 Identities = 186/209 (88%) Strand = Plus / Plus Query: 562 aggtaataccagcctttgaggaggctatgacaggcatgcgtccaggtggagttagaagga 621 |||| |||||||| |||||||||||||| ||| |||| ||||||||||||||| |||| Sbjct: 534 aggtcataccagcttttgaggaggctatatcagacatggctccaggtggagttaggagga 593 Query: 622 taatagtgccaccggatattggatacccagataatgacttgaacaagttaggcccaaaac 681 ||||||| ||||| ||| ||||||||||||| ||||||| |||||||| || ||||||| Sbjct: 594 taatagtaccaccagatcttggatacccagacaatgactacaacaagttgggtccaaaac 653 Query: 682 caacaacattttcgggacaaagggctctagattttgttctaaggaatcaaggattaatag 741 |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 654 caacgacattctcgggacaaagggctctggattttgttctgaggaatcaagggttgatag 713 Query: 742 acaaaactctcctgtttgacattgagctt 770 | ||||||||||||||||||||||||||| Sbjct: 714 ataaaactctcctgtttgacattgagctt 742
>ref|NM_001065373.1| Oryza sativa (japonica cultivar-group) Os07g0133700 (Os07g0133700) mRNA, complete cds Length = 777 Score = 232 bits (117), Expect = 2e-57 Identities = 186/209 (88%) Strand = Plus / Plus Query: 562 aggtaataccagcctttgaggaggctatgacaggcatgcgtccaggtggagttagaagga 621 |||| |||||||| |||||||||||||| ||| |||| ||||||||||||||| |||| Sbjct: 545 aggtcataccagcttttgaggaggctatatcagacatggctccaggtggagttaggagga 604 Query: 622 taatagtgccaccggatattggatacccagataatgacttgaacaagttaggcccaaaac 681 ||||||| ||||| ||| ||||||||||||| ||||||| |||||||| || ||||||| Sbjct: 605 taatagtaccaccagatcttggatacccagacaatgactacaacaagttgggtccaaaac 664 Query: 682 caacaacattttcgggacaaagggctctagattttgttctaaggaatcaaggattaatag 741 |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| || |||| Sbjct: 665 caacgacattctcgggacaaagggctctggattttgttctgaggaatcaagggttgatag 724 Query: 742 acaaaactctcctgtttgacattgagctt 770 | ||||||||||||||||||||||||||| Sbjct: 725 ataaaactctcctgtttgacattgagctt 753 Score = 155 bits (78), Expect = 4e-34 Identities = 102/110 (92%) Strand = Plus / Plus Query: 454 ttgattgggatggatacacaattggatactacggtcggatttttgaagctcgaaacaaga 513 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 422 ttgattgggatggctacacaattggatactatggtcgcatttttgaagctcgaaacaaga 481 Query: 514 ccaaaggtggttccttcgagggtggcgataaagaattcttcaagtttaag 563 |||||||||||||||| |||||||| |||||||| ||||| || |||||| Sbjct: 482 ccaaaggtggttcctttgagggtggtgataaagacttctttaaatttaag 531 Score = 143 bits (72), Expect = 1e-30 Identities = 144/168 (85%) Strand = Plus / Plus Query: 285 aagggagcagcaaaagctgaatttactgacatgccagcgcttcgtgggaaggattatgga 344 ||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||||||| Sbjct: 190 aagggggcagcaaaagctgagtttgctgatatgcctgcgcttcgtgggaaggattatgga 249 Query: 345 aagacaaaaatgagttatccagattacactgaaacagaatcaggcctccaatacaaggac 404 ||||| || |||| || |||||||||||||||||||||||||| || || ||||||||| Sbjct: 250 aagacgaagatgaagtacccagattacactgaaacagaatcaggtcttcagtacaaggac 309 Query: 405 ttgcgggttggagaaggtccatcccctaagaagggagagacagtagtg 452 ||| | ||||| || || || || || ||||| || || ||||||||| Sbjct: 310 ttgagagttggtgatgggccttctccaaagaaaggggaaacagtagtg 357
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 129 bits (65), Expect = 2e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 454 ttgattgggatggatacacaattggatactacggtcggatttttgaagctcgaaacaaga 513 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1811067 ttgattgggatggctacacaattggatactatggtcgcatttttgaagctcgaaacaaga 1811126 Query: 514 ccaaaggtggttccttcgagg 534 |||||||||||||||| |||| Sbjct: 1811127 ccaaaggtggttcctttgagg 1811147 Score = 111 bits (56), Expect = 5e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 695 gggacaaagggctctagattttgttctaaggaatcaaggattaatagacaaaactctcct 754 ||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| Sbjct: 1811907 gggacaaagggctctggattttgttctgaggaatcaagggttgatagataaaactctcct 1811966 Query: 755 gtttgacattgagctt 770 |||||||||||||||| Sbjct: 1811967 gtttgacattgagctt 1811982 Score = 101 bits (51), Expect = 5e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 316 tgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatccagattacactg 375 |||| ||||||||||||||||||||||||||||| || |||| || ||||||||||||| Sbjct: 1810678 tgcctgcgcttcgtgggaaggattatggaaagacgaagatgaagtacccagattacactg 1810737 Query: 376 aaacagaatcaggcctccaatacaagg 402 ||||||||||||| || || ||||||| Sbjct: 1810738 aaacagaatcaggtcttcagtacaagg 1810764 Score = 77.8 bits (39), Expect = 7e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 618 aggataatagtgccaccggatattggatacccagataatgacttgaacaagttaggccca 677 ||||||||||| ||||| ||| ||||||||||||| ||||||| |||||||| || ||| Sbjct: 1811742 aggataatagtaccaccagatcttggatacccagacaatgactacaacaagttgggtcca 1811801 Query: 678 aaaccaacaacattttcgg 696 |||||||| ||||| |||| Sbjct: 1811802 aaaccaacgacattctcgg 1811820 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Plus Query: 562 aggtaataccagcctttgaggaggctatgacaggcatgcgtccaggtggagttag 616 |||| |||||||| |||||||||||||| ||| |||| ||||||||||||||| Sbjct: 1811576 aggtcataccagcttttgaggaggctatatcagacatggctccaggtggagttag 1811630
>dbj|AP004338.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0507H12 Length = 143030 Score = 129 bits (65), Expect = 2e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 454 ttgattgggatggatacacaattggatactacggtcggatttttgaagctcgaaacaaga 513 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 15646 ttgattgggatggctacacaattggatactatggtcgcatttttgaagctcgaaacaaga 15705 Query: 514 ccaaaggtggttccttcgagg 534 |||||||||||||||| |||| Sbjct: 15706 ccaaaggtggttcctttgagg 15726 Score = 111 bits (56), Expect = 5e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 695 gggacaaagggctctagattttgttctaaggaatcaaggattaatagacaaaactctcct 754 ||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| Sbjct: 16486 gggacaaagggctctggattttgttctgaggaatcaagggttgatagataaaactctcct 16545 Query: 755 gtttgacattgagctt 770 |||||||||||||||| Sbjct: 16546 gtttgacattgagctt 16561 Score = 101 bits (51), Expect = 5e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 316 tgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatccagattacactg 375 |||| ||||||||||||||||||||||||||||| || |||| || ||||||||||||| Sbjct: 15257 tgcctgcgcttcgtgggaaggattatggaaagacgaagatgaagtacccagattacactg 15316 Query: 376 aaacagaatcaggcctccaatacaagg 402 ||||||||||||| || || ||||||| Sbjct: 15317 aaacagaatcaggtcttcagtacaagg 15343 Score = 77.8 bits (39), Expect = 7e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 618 aggataatagtgccaccggatattggatacccagataatgacttgaacaagttaggccca 677 ||||||||||| ||||| ||| ||||||||||||| ||||||| |||||||| || ||| Sbjct: 16321 aggataatagtaccaccagatcttggatacccagacaatgactacaacaagttgggtcca 16380 Query: 678 aaaccaacaacattttcgg 696 |||||||| ||||| |||| Sbjct: 16381 aaaccaacgacattctcgg 16399 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Plus Query: 562 aggtaataccagcctttgaggaggctatgacaggcatgcgtccaggtggagttag 616 |||| |||||||| |||||||||||||| ||| |||| ||||||||||||||| Sbjct: 16155 aggtcataccagcttttgaggaggctatatcagacatggctccaggtggagttag 16209
>dbj|AP003742.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_D07 Length = 131449 Score = 129 bits (65), Expect = 2e-26 Identities = 77/81 (95%) Strand = Plus / Plus Query: 454 ttgattgggatggatacacaattggatactacggtcggatttttgaagctcgaaacaaga 513 ||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 63286 ttgattgggatggctacacaattggatactatggtcgcatttttgaagctcgaaacaaga 63345 Query: 514 ccaaaggtggttccttcgagg 534 |||||||||||||||| |||| Sbjct: 63346 ccaaaggtggttcctttgagg 63366 Score = 111 bits (56), Expect = 5e-21 Identities = 71/76 (93%) Strand = Plus / Plus Query: 695 gggacaaagggctctagattttgttctaaggaatcaaggattaatagacaaaactctcct 754 ||||||||||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| Sbjct: 64126 gggacaaagggctctggattttgttctgaggaatcaagggttgatagataaaactctcct 64185 Query: 755 gtttgacattgagctt 770 |||||||||||||||| Sbjct: 64186 gtttgacattgagctt 64201 Score = 101 bits (51), Expect = 5e-18 Identities = 78/87 (89%) Strand = Plus / Plus Query: 316 tgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatccagattacactg 375 |||| ||||||||||||||||||||||||||||| || |||| || ||||||||||||| Sbjct: 62897 tgcctgcgcttcgtgggaaggattatggaaagacgaagatgaagtacccagattacactg 62956 Query: 376 aaacagaatcaggcctccaatacaagg 402 ||||||||||||| || || ||||||| Sbjct: 62957 aaacagaatcaggtcttcagtacaagg 62983 Score = 77.8 bits (39), Expect = 7e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 618 aggataatagtgccaccggatattggatacccagataatgacttgaacaagttaggccca 677 ||||||||||| ||||| ||| ||||||||||||| ||||||| |||||||| || ||| Sbjct: 63961 aggataatagtaccaccagatcttggatacccagacaatgactacaacaagttgggtcca 64020 Query: 678 aaaccaacaacattttcgg 696 |||||||| ||||| |||| Sbjct: 64021 aaaccaacgacattctcgg 64039 Score = 54.0 bits (27), Expect = 0.001 Identities = 48/55 (87%) Strand = Plus / Plus Query: 562 aggtaataccagcctttgaggaggctatgacaggcatgcgtccaggtggagttag 616 |||| |||||||| |||||||||||||| ||| |||| ||||||||||||||| Sbjct: 63795 aggtcataccagcttttgaggaggctatatcagacatggctccaggtggagttag 63849
>ref|NM_121344.3| Arabidopsis thaliana FK506 binding / peptidyl-prolyl cis-trans isomerase (AT5G13410) mRNA, complete cds Length = 921 Score = 73.8 bits (37), Expect = 1e-09 Identities = 67/77 (87%) Strand = Plus / Plus Query: 304 aatttactgacatgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatc 363 ||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||| Sbjct: 330 aatttgctgacatgccagcgcttaaagggaaggattatggcaaaacaaaaatgaagtatc 389 Query: 364 cagattacactgaaaca 380 ||||||| || |||||| Sbjct: 390 cagattatacagaaaca 406 Score = 46.1 bits (23), Expect = 0.25 Identities = 101/127 (79%) Strand = Plus / Plus Query: 435 aagggagagacagtagtgattgattgggatggatacacaattggatactacggtcggatt 494 |||||||| | ||| ||| |||| ||||| || |||||||| || ||||| || || || Sbjct: 461 aagggagacaaagttgtggttgactgggacggttacacaatagggtactatggacgcata 520 Query: 495 tttgaagctcgaaacaagaccaaaggtggttccttcgagggtggcgataaagaattcttc 554 ||||||||||| || || || ||||| ||||| || ||||| | ||||| ||||| ||| Sbjct: 521 tttgaagctcgcaataaaacaaaagggggttcttttgagggcgatgataaggaatttttc 580 Query: 555 aagttta 561 || |||| Sbjct: 581 aaattta 587
>gb|BT012636.1| Arabidopsis thaliana At5g13410 mRNA, complete cds Length = 771 Score = 73.8 bits (37), Expect = 1e-09 Identities = 67/77 (87%) Strand = Plus / Plus Query: 304 aatttactgacatgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatc 363 ||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||| Sbjct: 269 aatttgctgacatgccagcgcttaaagggaaggattatggcaaaacaaaaatgaagtatc 328 Query: 364 cagattacactgaaaca 380 ||||||| || |||||| Sbjct: 329 cagattatacagaaaca 345 Score = 46.1 bits (23), Expect = 0.25 Identities = 101/127 (79%) Strand = Plus / Plus Query: 435 aagggagagacagtagtgattgattgggatggatacacaattggatactacggtcggatt 494 |||||||| | ||| ||| |||| ||||| || |||||||| || ||||| || || || Sbjct: 400 aagggagacaaagttgtggttgactgggacggttacacaatagggtactatggacgcata 459 Query: 495 tttgaagctcgaaacaagaccaaaggtggttccttcgagggtggcgataaagaattcttc 554 ||||||||||| || || || ||||| ||||| || ||||| | ||||| ||||| ||| Sbjct: 460 tttgaagctcgcaataaaacaaaagggggttcttttgagggcgatgataaggaatttttc 519 Query: 555 aagttta 561 || |||| Sbjct: 520 aaattta 526
>dbj|AK175218.1| Arabidopsis thaliana mRNA, partial cds, clone: RAFL21-64-G07 Length = 875 Score = 73.8 bits (37), Expect = 1e-09 Identities = 67/77 (87%) Strand = Plus / Plus Query: 304 aatttactgacatgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatc 363 ||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||| Sbjct: 267 aatttgctgacatgccagcgcttaaagggaaggattatggcaaaacaaaaatgaagtatc 326 Query: 364 cagattacactgaaaca 380 ||||||| || |||||| Sbjct: 327 cagattatacagaaaca 343 Score = 46.1 bits (23), Expect = 0.25 Identities = 101/127 (79%) Strand = Plus / Plus Query: 435 aagggagagacagtagtgattgattgggatggatacacaattggatactacggtcggatt 494 |||||||| | ||| ||| |||| ||||| || |||||||| || ||||| || || || Sbjct: 398 aagggagacaaagttgtggttgactgggacggttacacaatagggtactatggacgcata 457 Query: 495 tttgaagctcgaaacaagaccaaaggtggttccttcgagggtggcgataaagaattcttc 554 ||||||||||| || || || ||||| ||||| || ||||| | ||||| ||||| ||| Sbjct: 458 tttgaagctcgcaataaaacaaaagggggttcttttgagggcgatgataaggaatttttc 517 Query: 555 aagttta 561 || |||| Sbjct: 518 aaattta 524
>emb|BX833291.1|CNS0A1LD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL43ZA07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 924 Score = 73.8 bits (37), Expect = 1e-09 Identities = 67/77 (87%) Strand = Plus / Plus Query: 304 aatttactgacatgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatc 363 ||||| ||||||||||||||||| |||||||||||||| || |||||||||| |||| Sbjct: 331 aatttgctgacatgccagcgcttaaagggaaggattatggcaaaacaaaaatgaagtatc 390 Query: 364 cagattacactgaaaca 380 ||||||| || |||||| Sbjct: 391 cagattatacagaaaca 407 Score = 46.1 bits (23), Expect = 0.25 Identities = 101/127 (79%) Strand = Plus / Plus Query: 435 aagggagagacagtagtgattgattgggatggatacacaattggatactacggtcggatt 494 |||||||| | ||| ||| |||| ||||| || |||||||| || ||||| || || || Sbjct: 462 aagggagacaaagttgtggttgactgggacggttacacaatagggtactatggacgcata 521 Query: 495 tttgaagctcgaaacaagaccaaaggtggttccttcgagggtggcgataaagaattcttc 554 ||||||||||| || || || ||||| ||||| || ||||| | ||||| ||||| ||| Sbjct: 522 tttgaagctcgcaataaaacaaaagggggttcttttgagggcgatgataaggaatttttc 581 Query: 555 aagttta 561 || |||| Sbjct: 582 aaattta 588
>emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project) Length = 68948 Score = 58.0 bits (29), Expect = 6e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 316 tgccagcgcttcgtgggaaggattatggaaagacaaaaatgagttatccagattacactg 375 ||||||||||| |||||||||||||| || |||||||||| ||||||||||| || | Sbjct: 44161 tgccagcgcttaaagggaaggattatggcaaaacaaaaatgaagtatccagattatacag 44102 Query: 376 aaaca 380 ||||| Sbjct: 44101 aaaca 44097
>emb|BX247884.6| Zebrafish DNA sequence from clone CH211-174M1 in linkage group 1, complete sequence Length = 108530 Score = 48.1 bits (24), Expect = 0.062 Identities = 24/24 (100%) Strand = Plus / Plus Query: 950 atatgtaaatatatatactgtata 973 |||||||||||||||||||||||| Sbjct: 48824 atatgtaaatatatatactgtata 48847
>emb|CR388055.6| Zebrafish DNA sequence from clone DKEY-56D12 in linkage group 5, complete sequence Length = 190426 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 953 tgtaaatatatatactgtatact 975 ||||||||||||||||||||||| Sbjct: 82763 tgtaaatatatatactgtatact 82785
>gb|M58656.1|MZEPPDKA2 Corn pyruvate,orthophosphate dikinase gene, exons 2-19 Length = 5519 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 953 tgtaaatatatatactgtatact 975 ||||||||||||||||||||||| Sbjct: 2815 tgtaaatatatatactgtatact 2837
>emb|AL591771.1|CNS07EGO Human chromosome 14 DNA sequence BAC R-727C22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 154205 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Minus Query: 637 atattggatacccagataatgacttga 663 |||||||||||||||||||| |||||| Sbjct: 141891 atattggatacccagataataacttga 141865
>gb|AC103602.12| Mus musculus chromosome 1, clone RP24-234P21, complete sequence Length = 158510 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 855 ttgttcaacagaataagatgtt 876 |||||||||||||||||||||| Sbjct: 45856 ttgttcaacagaataagatgtt 45835
>gb|AC169673.3| Mus musculus chromosome 1, clone RP24-188K18, complete sequence Length = 166442 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 855 ttgttcaacagaataagatgtt 876 |||||||||||||||||||||| Sbjct: 153120 ttgttcaacagaataagatgtt 153099
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 cctgcccgccgccgtcgtgctcggg 186 |||||||||||||| |||||||||| Sbjct: 4231020 cctgcccgccgccgacgtgctcggg 4230996
>gb|CP000350.1| Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 1, complete sequence Length = 3576473 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tgaatcttccttcccattttc 843 ||||||||||||||||||||| Sbjct: 1754859 tgaatcttccttcccattttc 1754879
>gb|CP000348.1| Leptospira borgpetersenii serovar Hardjo-bovis L550 chromosome 1, complete sequence Length = 3614446 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 823 tgaatcttccttcccattttc 843 ||||||||||||||||||||| Sbjct: 1996399 tgaatcttccttcccattttc 1996419
>gb|AC189957.4| Rhesus Macaque BAC CH250-276H13 () complete sequence Length = 200426 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 958 atatatatactgtatacttga 978 ||||||||||||||||||||| Sbjct: 123700 atatatatactgtatacttga 123680
>emb|CR925812.10| Zebrafish DNA sequence from clone DKEY-72P6 in linkage group 10, complete sequence Length = 207061 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 846 ttgttcatcttgttcaacaga 866 ||||||||||||||||||||| Sbjct: 167768 ttgttcatcttgttcaacaga 167748
>gb|AC153907.1| Mus musculus BAC RP23-205F6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 196286 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 300 gctgaatttactgacatgcca 320 ||||||||||||||||||||| Sbjct: 75824 gctgaatttactgacatgcca 75844
>gb|AC119953.15| Mus musculus chromosome 16, clone RP24-449J13, complete sequence Length = 156473 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 946 ttggatatgtaaatatatata 966 ||||||||||||||||||||| Sbjct: 153306 ttggatatgtaaatatatata 153326
>gb|AC148021.2| Mus musculus BAC clone RP23-9A7 from chromosome 19, complete sequence Length = 213178 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 950 atatgtaaatatatatactgtatac 974 ||||||| ||||||||||||||||| Sbjct: 138788 atatgtacatatatatactgtatac 138764
>gb|AY459339.1| Oryza sativa (japonica cultivar-group) clone CL005170.5 R2R3-MYB gene region Length = 9432 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tctcttcttgccatggcggta 210 ||||||||||||||||||||| Sbjct: 1841 tctcttcttgccatggcggta 1821
>gb|AC141867.4| Mus musculus BAC clone RP24-424E17 from chromosome 19, complete sequence Length = 126889 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 950 atatgtaaatatatatactgtatac 974 ||||||| ||||||||||||||||| Sbjct: 10302 atatgtacatatatatactgtatac 10326
>gb|AC130816.4| Mus musculus BAC clone RP23-52D16 from chromosome 6, complete sequence Length = 111111 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 gctgaatttactgacatgcca 320 ||||||||||||||||||||| Sbjct: 2920 gctgaatttactgacatgcca 2900
>emb|CT009698.8| Mouse DNA sequence from clone RP23-117P22 on chromosome 16, complete sequence Length = 210485 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 946 ttggatatgtaaatatatata 966 ||||||||||||||||||||| Sbjct: 136928 ttggatatgtaaatatatata 136908
>gb|AF474135.1| Oryza sativa typical P-type R2R3 Myb protein gene, complete cds Length = 1507 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tctcttcttgccatggcggta 210 ||||||||||||||||||||| Sbjct: 609 tctcttcttgccatggcggta 589
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tctcttcttgccatggcggta 210 ||||||||||||||||||||| Sbjct: 4917695 tctcttcttgccatggcggta 4917675
>emb|Z82205.1|HS363L9 Human DNA sequence from clone RP3-363L9 on chromosome X Contains a N-acetyltransferase 5 (ARD1 homolog, S. cerevisiae) (NAT5) pseudogene, complete sequence Length = 125971 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 434 gaagggagagacagtagtgat 454 ||||||||||||||||||||| Sbjct: 102983 gaagggagagacagtagtgat 103003
>emb|AL353801.13| Human DNA sequence from clone RP11-285G1 on chromosome 10 Contains two novel genes, the gene for AD037 protein (AD037), the gene for a decidual protein induced by progesterone (DEPP), a novel gene (FLJ30567), the ZNF22 gene for zinc finger protein 22 (KOX 15), a novel gene and two CpG islands, complete sequence Length = 222490 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 950 atatgtaaatatatatactgt 970 ||||||||||||||||||||| Sbjct: 127933 atatgtaaatatatatactgt 127953
>emb|AL158159.14| Human DNA sequence from clone RP11-498N2 on chromosome 9 Contains the 3' end of the CHAC gene for chorea acanthocytosis, the 3' end of the GNA14 gene for guanine nucleotide binding protein (G protein) alpha 14 and the 5' end of a novel gene, complete sequence Length = 167006 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 820 aagtgaatcttccttcccattttct 844 ||||||| ||||||||||||||||| Sbjct: 55383 aagtgaaccttccttcccattttct 55359
>emb|BX469931.8| Zebrafish DNA sequence from clone DKEY-108D22 in linkage group 4, complete sequence Length = 204487 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 950 atatgtaaatatatatactgtatac 974 |||| |||||||||||||||||||| Sbjct: 53359 atatataaatatatatactgtatac 53383
>emb|CR391923.9| Zebrafish DNA sequence from clone DKEYP-13D11 in linkage group 1, complete sequence Length = 181214 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 861 aacagaataagatgttaggag 881 ||||||||||||||||||||| Sbjct: 114995 aacagaataagatgttaggag 114975
>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671B11 Length = 168372 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tctcttcttgccatggcggta 210 ||||||||||||||||||||| Sbjct: 18148 tctcttcttgccatggcggta 18128
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tctcttcttgccatggcggta 210 ||||||||||||||||||||| Sbjct: 162344 tctcttcttgccatggcggta 162324
>gb|AC016955.15| Homo sapiens 3 BAC RP11-21I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169343 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 950 atatgtaaatatatatactgt 970 ||||||||||||||||||||| Sbjct: 65046 atatgtaaatatatatactgt 65026
>gb|AC093496.2| Homo sapiens chromosome 3 clone RP11-536I6 map 3p, complete sequence Length = 184041 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 564 gtaataccagcctttgaggaggcta 588 ||||||||||| ||||||||||||| Sbjct: 9267 gtaataccagcatttgaggaggcta 9243
>gb|AC090941.2| Homo sapiens chromosome 3 clone RP11-16L19 map 3p, complete sequence Length = 187159 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 564 gtaataccagcctttgaggaggcta 588 ||||||||||| ||||||||||||| Sbjct: 93450 gtaataccagcatttgaggaggcta 93426
>gb|AC146656.3| Otolemur garnettii clone CH256-389C8, complete sequence Length = 185109 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 952 atgtaaatatatatactgtat 972 ||||||||||||||||||||| Sbjct: 85178 atgtaaatatatatactgtat 85158
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 162 cctgcccgccgccgtcgtgctcggg 186 |||||||||||||| |||||||||| Sbjct: 3630749 cctgcccgccgccgacgtgctcggg 3630725
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 958 atatatatactgtatacttga 978 ||||||||||||||||||||| Sbjct: 2200904 atatatatactgtatacttga 2200924
>emb|AL929315.8| Zebrafish DNA sequence from clone CH211-69K21, complete sequence Length = 174143 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 846 ttgttcatcttgttcaacaga 866 ||||||||||||||||||||| Sbjct: 90706 ttgttcatcttgttcaacaga 90686 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 188,386,762 Number of extensions: 10609743 Number of successful extensions: 219071 Number of sequences better than 10.0: 44 Number of HSP's gapped: 219071 Number of HSP's successfully gapped: 63 Length of query: 1020 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 997 Effective length of database: 18,503,978,556 Effective search space: 18448466620332 Effective search space used: 18448466620332 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)