ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63e08 |
|---|---|
| Clone Library Name | barley_pub |
>Q9JKA9:HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 - Rattus norvegicus (Rat) Length = 863 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/84 (33%), Positives = 36/84 (42%) Frame = +1 Query: 103 PTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHHQEAAMV 282 P A RT P P P+ A P R SR ++P P + A AA Sbjct: 758 PRAPRTSPYGVPGSPATRVGPALPARRLSRASRPLSASQPSLPHGAPAP-----SPAASA 812 Query: 283 VPVAHASPRLGGAQGTRSAPNLPD 354 P + ++PRLG A TR+A PD Sbjct: 813 RPASSSTPRLGPAPTTRTAAPSPD 836
>O88703:HCN2_MOUSE Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 - Mus musculus (Mouse) Length = 863 Score = 39.3 bits (90), Expect = 0.011 Identities = 28/84 (33%), Positives = 36/84 (42%) Frame = +1 Query: 103 PTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHHQEAAMV 282 P A RT P P P+ A P R SR ++P P + V A AA Sbjct: 758 PRAPRTSPYGVPGSPATRVGPALPARRLSRASRPLSASQPSLPHGVPAP-----SPAASA 812 Query: 283 VPVAHASPRLGGAQGTRSAPNLPD 354 P + ++PRLG A R+A PD Sbjct: 813 RPASSSTPRLGPAPTARTAAPSPD 836
>Q9UL51:HCN2_HUMAN Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated| channel 2 - Homo sapiens (Human) Length = 889 Score = 35.0 bits (79), Expect = 0.20 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 3/93 (3%) Frame = +1 Query: 85 SEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHH 264 + P P P A +P P S G P A + P P RL+ + L H Sbjct: 770 ASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQPSLPH 829 Query: 265 QE---AAMVVPVAHASPRLGGAQGTRSAPNLPD 354 AA P + ++PRLG R+A PD Sbjct: 830 GAPGPAASTRPASSSTPRLGPTPAARAAAPSPD 862
>Q9NRR6:INP5E_HUMAN 72 kDa inositol polyphosphate 5-phosphatase - Homo sapiens (Human)| Length = 644 Score = 34.3 bits (77), Expect = 0.34 Identities = 27/77 (35%), Positives = 30/77 (38%), Gaps = 1/77 (1%) Frame = +1 Query: 85 SEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSR-PTKPCCRLAPPVSESVIANYQLH 261 SEP P P GRT + P P G+ P A S P C A P E A Sbjct: 11 SEPAPQPPEGRTLQGQLPGAPPAQRAGSPPDAPGSESPALACSTPATPSGEDPPA----- 65 Query: 262 HQEAAMVVPVAHASPRL 312 AA + P A PRL Sbjct: 66 --RAAPIAPRPPARPRL 80
>Q10690:Y2082_MYCTU Uncharacterized protein Rv2082 - Mycobacterium tuberculosis| Length = 721 Score = 32.3 bits (72), Expect = 1.3 Identities = 27/91 (29%), Positives = 36/91 (39%) Frame = +1 Query: 34 PCARGEQMLLPQDRAWRSEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCR 213 P A G Q L +EPLP P T P+ T + + P S PT Sbjct: 327 PAAAGAQALSAGALHAATEPLPPPAPPPTTPTVTTPTVATATTAGIPHIPDSAPTPSPAP 386 Query: 214 LAPPVSESVIANYQLHHQEAAMVVPVAHASP 306 +APP +++ A + A MV ASP Sbjct: 387 IAPPTTDNASAMTPI----APMVANGPPASP 413
>A0FI79:INP5E_PANTR 72 kDa inositol polyphosphate 5-phosphatase - Pan troglodytes| (Chimpanzee) Length = 644 Score = 32.3 bits (72), Expect = 1.3 Identities = 26/77 (33%), Positives = 29/77 (37%), Gaps = 1/77 (1%) Frame = +1 Query: 85 SEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSR-PTKPCCRLAPPVSESVIANYQLH 261 SEP P P GRT + P P G+ P S P C A P E A Sbjct: 11 SEPAPQPPEGRTLQGQLPGAPLAQRAGSPPDVPGSESPALACSTPATPSGEDPPA----- 65 Query: 262 HQEAAMVVPVAHASPRL 312 AA + P A PRL Sbjct: 66 --RAAPIAPRPPARPRL 80
>Q61818:RAI1_MOUSE Retinoic acid-induced protein 1 - Mus musculus (Mouse)| Length = 1889 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/109 (24%), Positives = 40/109 (36%) Frame = +1 Query: 34 PCARGEQMLLPQDRAWRSEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCR 213 PC +L P DRA ++ G + S P +G + RP +P R Sbjct: 1436 PCPGQPLLLAPHDRASSTQG-----GGEDNSSGGGKKPKTEELGPASQPPEGRPCQPQTR 1490 Query: 214 LAPPVSESVIANYQLHHQEAAMVVPVAHASPRLGGAQGTRSAPNLPDSP 360 ++ ++Y + + AHASP G A R LP P Sbjct: 1491 AQKQPGQASYSSYSKRKRLSRGRGKTAHASPCKGRATRRRQQQVLPLDP 1539
>A1YF08:PDX1_GORGO Pancreas/duodenum homeobox protein 1 - Gorilla gorilla gorilla| (Lowland gorilla) Length = 284 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Frame = +1 Query: 112 GRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHHQEAAMVVPV 291 GR P P HP A+GA + P PP+++ + HH A + +P Sbjct: 39 GRQPPPPPPPHPFPGALGA---LEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLALPH 95 Query: 292 AHASPRLGGAQ-GTRSAPNLPDSP 360 A P GA+ G PN P Sbjct: 96 PPAGPFPEGAEPGVLEEPNRVQLP 119
>Q8XTV4:DNAA_RALSO Chromosomal replication initiator protein dnaA - Ralstonia| solanacearum (Pseudomonas solanacearum) Length = 522 Score = 31.6 bits (70), Expect = 2.2 Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 17/115 (14%) Frame = +1 Query: 100 DPTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAP------PVSESVIANYQLH 261 DPTAG+ + P+ + M +P A ++ + R AP P E+ +A Sbjct: 80 DPTAGQRQAAM---QPALAPMPMQPLAAQTMQAQAVPREAPARPTMAPYRETPMATAA-- 134 Query: 262 HQEAAMVVPVAHAS-----------PRLGGAQGTRSAPNLPDSPVADLVHVGSRL 393 H A + VPV A+ P G SAP P +PV D VH SRL Sbjct: 135 HAAADIDVPVMDAAEASTQSYRVPAPAAPAVMGGLSAP--PAAPVDDTVHERSRL 187
>Q9BTK6:CP053_HUMAN Uncharacterized protein C16orf53 - Homo sapiens (Human)| Length = 254 Score = 31.2 bits (69), Expect = 2.9 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -3 Query: 391 GEIQRARGRRRANPEDLARIWCLELRRDEAKHERRGQPWRPP 266 GE+ A G A E+ + WC+ +E + GQPW PP Sbjct: 69 GEVPSAGGEEPA--EEDSEDWCVPCSDEEVELPADGQPWMPP 108
>Q9C0E4:GRIP2_HUMAN Glutamate receptor-interacting protein 2 - Homo sapiens (Human)| Length = 1043 Score = 31.2 bits (69), Expect = 2.9 Identities = 39/135 (28%), Positives = 52/135 (38%), Gaps = 20/135 (14%) Frame = +1 Query: 67 QDRAWRSEPLPDPTAGRTHPSRTPCHPSRSAMGARPRA------RRSRPTKPCCRLAPPV 228 Q R+ S P PT P R + PR +R R K LA Sbjct: 383 QSRSLSSTPFSSPTLNHAFSCNNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLA--- 439 Query: 229 SESVIANYQLHHQEAAMVV----PVAHASPRLGG---AQGTRSAPNL-----PDSPV--A 366 S +V Q+ H E VV P++ +L G A T S+P L PDSP Sbjct: 440 SSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERC 499 Query: 367 DLVHVGSRLLCLTSL 411 L+ VG R+L + + Sbjct: 500 GLLQVGDRVLSINGI 514
>P29936:COBV_PSEDE Cobalamin synthase - Pseudomonas denitrificans| Length = 262 Score = 30.8 bits (68), Expect = 3.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -3 Query: 145 DGMGSGSDGYALLLDREVALTAMLDLEEGAFALLGRMVTPGWGVA 11 DG+G +DG+ DRE AL M D G +A + +++ G V+ Sbjct: 88 DGLGDTADGFGGGRDREAALAIMKDSRIGTYAAVALILSFGLRVS 132
>Q5TZ18:NAV3_DANRE Neuron navigator 3 - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 2269 Score = 30.8 bits (68), Expect = 3.8 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +1 Query: 94 LPDPTAGRTHPSRT--PCHPSRSAM-GARPRARRSRPTKPCC--RLAPPVSES 237 +P PTAG+T S++ H + S+M +P + S PT P RL PP++++ Sbjct: 294 IPSPTAGKTWRSKSMNMKHSATSSMLATKPPSPTSSPTPPSSSDRLRPPITDA 346
>Q9KCH9:COBS_BACHD Cobalamin synthase - Bacillus halodurans| Length = 261 Score = 30.4 bits (67), Expect = 4.9 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -3 Query: 145 DGMGSGSDGYALLLDREVALTAMLDLEEGAFALLGRMVTPGWGV 14 DG SD + DRE L + D GAFA++ ++ GW V Sbjct: 83 DGWMDVSDAFLSRRDRETKLIILKDSRVGAFAVMTTILLIGWKV 126
>Q9FXT4:AGAL_ORYSJ Alpha-galactosidase precursor - Oryza sativa subsp. japonica (Rice)| Length = 417 Score = 30.4 bits (67), Expect = 4.9 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = -3 Query: 292 RRGQPWRPPGDGAGNWR*HSPTRAVRADNRAWWGGYDELGGEHPWQTARDGMGSGSD 122 R G WR GD A NW + RAD W Y GG + G G S+ Sbjct: 230 RMGNSWRTTGDIADNW----GSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSE 282
>Q63503:NR1D1_RAT Orphan nuclear receptor NR1D1 - Rattus norvegicus (Rat)| Length = 508 Score = 30.4 bits (67), Expect = 4.9 Identities = 30/118 (25%), Positives = 43/118 (36%) Frame = +1 Query: 85 SEPLPDPTAGRTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHH 264 + P P PT+G PS P +G ++ P P P E VI+ H Sbjct: 133 TSPAPHPTSGSVGPSPPPAPAPTPLVGFSQFPQQLTP--PRSPSPEPTVEDVISQVARAH 190 Query: 265 QEAAMVVPVAHASPRLGGAQGTRSAPNLPDSPVADLVHVGSRLLCLTSLEMPRTTDSN 438 +E +A +LG + G +A + SP A C S P T + N Sbjct: 191 REI-----FTYAHDKLGTSPGNFNANHASGSPPATTPQ------CWESQGCPSTPNDN 237
>A2T756:PDX1_PANTR Pancreas/duodenum homeobox protein 1 - Pan troglodytes (Chimpanzee)| Length = 283 Score = 30.0 bits (66), Expect = 6.4 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 8/103 (7%) Frame = +1 Query: 76 AWRSEPLPDPTAGRT-------HPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSE 234 A++ P P+ +AG P P HP A+GA + P PP+++ Sbjct: 19 AFQRGPAPEFSAGPPACLYMGRQPPPPPPHPFPGALGA---LEQGSPPDISPYEVPPLAD 75 Query: 235 SVIANYQLHHQEAAMVVPVAHASPRLGGAQ-GTRSAPNLPDSP 360 + HH A + +P A P GA+ G PN P Sbjct: 76 DPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLP 118
>A1YG85:PDX1_PANPA Pancreas/duodenum homeobox protein 1 - Pan paniscus (Pygmy| chimpanzee) (Bonobo) Length = 283 Score = 30.0 bits (66), Expect = 6.4 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 8/103 (7%) Frame = +1 Query: 76 AWRSEPLPDPTAGRT-------HPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSE 234 A++ P P+ +AG P P HP A+GA + P PP+++ Sbjct: 19 AFQRGPAPEFSAGPPACLYMGRQPPPPPPHPFPGALGA---LEQGSPPDISPYEVPPLAD 75 Query: 235 SVIANYQLHHQEAAMVVPVAHASPRLGGAQ-GTRSAPNLPDSP 360 + HH A + +P A P GA+ G PN P Sbjct: 76 DPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLP 118
>Q5KE13:BRO1_CRYNE Vacuolar protein-sorting protein BRO1 - Cryptococcus neoformans| (Filobasidiella neoformans) Length = 957 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +1 Query: 223 PVSESVIANYQLHHQEAAMVVPVAHASPRLGGAQGTRSAPNLPDSP 360 P + V+AN L + AA+ + PRL GT S PNLP P Sbjct: 773 PSTGGVVANRGLEERLAALKMEAPPQPPRL----GTTSTPNLPPPP 814
>P93329:NO20_MEDTR Early nodulin 20 precursor - Medicago truncatula (Barrel medic)| Length = 268 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/56 (35%), Positives = 26/56 (46%) Frame = +2 Query: 239 SSPITSSITRRPPWLSPSLMLRLVSAELKAPDPRQIFRIRPSPTSCTLDLASSASP 406 S+PI R P SPS L K+P P + + PSP+ LA S+SP Sbjct: 181 STPIPHPRKRSPASPSPSPSLS------KSPSPSESPSLAPSPSDSVASLAPSSSP 230
>Q8VHN2:NMD3B_RAT Glutamate [NMDA] receptor subunit 3B precursor - Rattus norvegicus| (Rat) Length = 1002 Score = 29.6 bits (65), Expect = 8.3 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%) Frame = -3 Query: 322 ELRRDEAKHERRG-QPWRPPGDGAGNWR*HSPTRAVRADNRA-WWGGYDELGGEHPW 158 E +++ A+ ER G + P DGAG WR RAV + R + E GG+ PW Sbjct: 889 EGQQERAEQERSGPKDELPATDGAGRWR--RVRRAVERERRVRFLLEPGEAGGDRPW 943
>O35348:COLQ_MOUSE Acetylcholinesterase collagenic tail peptide precursor - Mus| musculus (Mouse) Length = 457 Score = 29.6 bits (65), Expect = 8.3 Identities = 18/65 (27%), Positives = 26/65 (40%) Frame = +2 Query: 212 GSHRPCRRVSSPITSSITRRPPWLSPSLMLRLVSAELKAPDPRQIFRIRPSPTSCTLDLA 391 GSH+ C + P PP L P R + L +PD + + + SP+ C Sbjct: 46 GSHKACCLLMPP--------PPPLFPPPFFRGSRSPLLSPDMKNLLELEASPSPCIQGSL 97 Query: 392 SSASP 406 S P Sbjct: 98 GSPGP 102
>Q86X52:CHSS1_HUMAN Chondroitin sulfate synthase 1 - Homo sapiens (Human)| Length = 802 Score = 29.6 bits (65), Expect = 8.3 Identities = 19/52 (36%), Positives = 25/52 (48%) Frame = -3 Query: 418 ASRAR*GRGGEIQRARGRRRANPEDLARIWCLELRRDEAKHERRGQPWRPPG 263 ASR R E++RA RRRA+PE + A+ + RG PPG Sbjct: 23 ASRLVLPRASELKRAGPRRRASPEGCRSGQAAASQAGGARGDARGAQLWPPG 74
>Q96ST3:SIN3A_HUMAN Paired amphipathic helix protein Sin3a - Homo sapiens (Human)| Length = 1273 Score = 29.6 bits (65), Expect = 8.4 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Frame = +1 Query: 103 PTAG-RTHPSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESVIANYQLHHQEAAM 279 PT G + P P HPS+ + + P + P P +++ P + Q H Sbjct: 212 PTHGIQPQPQPPPQHPSQPSAQSAPAPAQPAPQPPPAKVSKP------SQLQAH------ 259 Query: 280 VVPVAHASPRLGGAQGTRSAPNLPDSPV 363 P + +P L RS P P +PV Sbjct: 260 -TPASQQTPPLPPYASPRSPPVQPHTPV 286
>Q9CCP9:RPE_MYCLE Ribulose-phosphate 3-epimerase - Mycobacterium leprae| Length = 224 Score = 29.6 bits (65), Expect = 8.4 Identities = 19/65 (29%), Positives = 27/65 (41%) Frame = +1 Query: 211 RLAPPVSESVIANYQLHHQEAAMVVPVAHASPRLGGAQGTRSAPNLPDSPVADLVHVGSR 390 R APP +E+ N H + V VAH G G P P +P D++ Sbjct: 72 RWAPPYAEAGAYNVTFHAEATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDT 131 Query: 391 LLCLT 405 LL ++ Sbjct: 132 LLIMS 136
>Q21624:CORO_CAEEL Coronin-like protein cor-1 - Caenorhabditis elegans| Length = 607 Score = 29.6 bits (65), Expect = 8.4 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = +1 Query: 124 PSRTPCHPSRSAMGARPRARRSRPTKPCCRLAPPVSESV-IANYQLHHQEAAMVVPVAHA 300 P+R P + + +A A+P+ + ++ LAP +ESV +Y + P A Sbjct: 383 PNRQPVNAAAAAAAAKPKVQVAKKANILSTLAPTAAESVPTQSYSERPPSSQQPSPRPSA 442 Query: 301 SPR 309 SPR Sbjct: 443 SPR 445
>O35817:AKA14_RAT A-kinase anchor protein 14 - Rattus norvegicus (Rat)| Length = 502 Score = 29.6 bits (65), Expect = 8.4 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 259 HHQEAAMVVPVAHASPRLGGAQGTRSAPNLPDSPV 363 H + VPVAHA+P AQ + +AP P PV Sbjct: 172 HAVQVPHAVPVAHAAPVAHTAQVSHAAPVAPSLPV 206 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 106,064,831 Number of extensions: 2425363 Number of successful extensions: 8817 Number of sequences better than 10.0: 27 Number of HSP's gapped: 8793 Number of HSP's successfully gapped: 27 Length of query: 196 Length of database: 100,686,439 Length adjustment: 107 Effective length of query: 89 Effective length of database: 71,336,874 Effective search space: 6348981786 Effective search space used: 6348981786 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
