ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf63e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 48 0.035
2dbj|AB270530.1| Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete... 42 2.2
3gb|DQ351904.1| Klebsiella sp. LSSE-H2 carbazole operon, partial ... 42 2.2
4dbj|AB095953.2| Sphingomonas sp. KA1 car operons, complete cds 42 2.2
5ref|XM_363911.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 8.6
6gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome... 40 8.6
7gb|AF178757.1| Anabaena PCC7120 phycobilisome rod structure gene... 40 8.6
8gb|AC152166.4| Mus musculus BAC clone RP23-425A3 from chromosome... 40 8.6
9gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 8.6
10emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 8.6
11dbj|AK050739.1| Mus musculus 9 days embryo whole body cDNA, RIKE... 40 8.6
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
13emb|AL512503.14| Human DNA sequence from clone RP11-323K8 on chr... 40 8.6
14emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome 40 8.6
15emb|AJ238385.1|CLA238385 Chinchilla lanigera vWF gene (partial),... 40 8.6
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.6
17emb|X05239.1|ANPC Anabaena 7120 billiprotein phycocyanin operon 40 8.6
18emb|AJ849318.1| Trinomys yonenagae partial vWF gene for von Will... 40 8.6
19emb|AJ849316.1| Trinomys paratus partial vWF gene for von Willeb... 40 8.6
20emb|AJ002783.1|NGAJ2783 Neisseria gonorrhoeae aroK, aroB, yafJ g... 40 8.6
21gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.6
22dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.6
23dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
24dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
25emb|BX649370.5| Zebrafish DNA sequence from clone DKEY-97I11 in ... 40 8.6
26gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 40 8.6
27emb|AL160314.7|CNS01RH3 Human chromosome 14 DNA sequence BAC C-2... 40 8.6
28ref|XM_672524.1| Plasmodium berghei strain ANKA translation init... 40 8.6
29emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chr... 40 8.6
30emb|AL731794.13| Mouse DNA sequence from clone RP23-232L4 on chr... 40 8.6

>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061
 Score = 48.1 bits (24), Expect = 0.035
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 353    attcgcccgtcgccgacctcgtgc 376
              ||||||||||||||||||||||||
Sbjct: 291343 attcgcccgtcgccgacctcgtgc 291320



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>dbj|AB270530.1| Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence
          Length = 254797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 342   aaatcttccggattcgcccgtcgcc 366
             |||||||| ||||||||||||||||
Sbjct: 34340 aaatcttcaggattcgcccgtcgcc 34316



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>gb|DQ351904.1| Klebsiella sp. LSSE-H2 carbazole operon, partial sequence
          Length = 3782

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 342  aaatcttccggattcgcccgtcgcc 366
            |||||||| ||||||||||||||||
Sbjct: 3705 aaatcttcaggattcgcccgtcgcc 3729



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>dbj|AB095953.2| Sphingomonas sp. KA1 car operons, complete cds
          Length = 13651

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 342  aaatcttccggattcgcccgtcgcc 366
            |||||||| ||||||||||||||||
Sbjct: 8824 aaatcttcaggattcgcccgtcgcc 8848



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>ref|XM_363911.1| Magnaporthe grisea 70-15 hypothetical protein (MG01837.4) partial
            mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 135  cccatgccatccctcgcggtctgc 158
            ||||||||||||||||||| ||||
Sbjct: 1406 cccatgccatccctcgcgggctgc 1383



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>gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome 7, complete sequence
          Length = 151861

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    taaaagttactttgaagccg 572
              ||||||||||||||||||||
Sbjct: 125865 taaaagttactttgaagccg 125884



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>gb|AF178757.1| Anabaena PCC7120 phycobilisome rod structure gene cluster, partial
            sequence
          Length = 16341

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 519  ggctatgttttatttctgggaaac 542
            ||||||||||||||||| ||||||
Sbjct: 8489 ggctatgttttatttcttggaaac 8466



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>gb|AC152166.4| Mus musculus BAC clone RP23-425A3 from chromosome 7, complete sequence
          Length = 216652

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   taaaagttactttgaagccg 572
             ||||||||||||||||||||
Sbjct: 37955 taaaagttactttgaagccg 37974



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 519     ggctatgttttatttctgggaaac 542
               ||||||||||||||||| ||||||
Sbjct: 3636164 ggctatgttttatttcttggaaac 3636141



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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    taccagctccatcaccagga 269
              ||||||||||||||||||||
Sbjct: 875452 taccagctccatcaccagga 875471



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>dbj|AK050739.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030013L11
            product:unclassifiable, full insert sequence
          Length = 3320

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 547  tttaaataaaagttactttg 566
            ||||||||||||||||||||
Sbjct: 1764 tttaaataaaagttactttg 1745



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 169      cgcccccgagctcgtcgtagccgc 192
                |||||||||||||||||| |||||
Sbjct: 10048680 cgcccccgagctcgtcgtcgccgc 10048703



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>emb|AL512503.14| Human DNA sequence from clone RP11-323K8 on chromosome 1 Contains part
             of the NOTCH2 gene for Notch homolog 2 (Drosophila),
             complete sequence
          Length = 109612

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 538   gaaacacagtttaaataaaa 557
             ||||||||||||||||||||
Sbjct: 15809 gaaacacagtttaaataaaa 15828



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>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome
          Length = 1144377

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 549    taaataaaagttactttgaa 568
              ||||||||||||||||||||
Sbjct: 661828 taaataaaagttactttgaa 661847



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>emb|AJ238385.1|CLA238385 Chinchilla lanigera vWF gene (partial), exon 28
          Length = 1263

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 28  gtgtgaccatgcgcccgagg 47
           ||||||||||||||||||||
Sbjct: 660 gtgtgaccatgcgcccgagg 679



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 166     gctcgcccccgagctcgtcg 185
               ||||||||||||||||||||
Sbjct: 5349253 gctcgcccccgagctcgtcg 5349272



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>emb|X05239.1|ANPC Anabaena 7120 billiprotein phycocyanin operon
          Length = 3920

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 519 ggctatgttttatttctgggaaac 542
           ||||||||||||||||| ||||||
Sbjct: 432 ggctatgttttatttcttggaaac 409



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>emb|AJ849318.1| Trinomys yonenagae partial vWF gene for von Willebrand Factor, exon
           28
          Length = 1155

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  tgtgaccatgcgcccgagga 48
           ||||||||||||||||||||
Sbjct: 592 tgtgaccatgcgcccgagga 611



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>emb|AJ849316.1| Trinomys paratus partial vWF gene for von Willebrand Factor, exon
           28
          Length = 1171

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 29  tgtgaccatgcgcccgagga 48
           ||||||||||||||||||||
Sbjct: 610 tgtgaccatgcgcccgagga 629



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>emb|AJ002783.1|NGAJ2783 Neisseria gonorrhoeae aroK, aroB, yafJ genes and open reading frame
          Length = 3502

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 353  attcgcccgtcgccgacctcgtgc 376
            |||| |||||||||||||||||||
Sbjct: 2473 attcccccgtcgccgacctcgtgc 2496



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 353     attcgcccgtcgccgacctcgtgc 376
               |||| |||||||||||||||||||
Sbjct: 1907661 attcccccgtcgccgacctcgtgc 1907684



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 519    ggctatgttttatttctgggaaac 542
              ||||||||||||||||| ||||||
Sbjct: 620769 ggctatgttttatttcttggaaac 620746



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>dbj|AP006158.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1127C04
          Length = 121441

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 169   cgcccccgagctcgtcgtagccgc 192
             |||||||||||||||||| |||||
Sbjct: 88582 cgcccccgagctcgtcgtcgccgc 88605



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>dbj|AP006064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0023I13
          Length = 165911

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 169  cgcccccgagctcgtcgtagccgc 192
            |||||||||||||||||| |||||
Sbjct: 8026 cgcccccgagctcgtcgtcgccgc 8049



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>emb|BX649370.5| Zebrafish DNA sequence from clone DKEY-97I11 in linkage group 24,
              complete sequence
          Length = 167578

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    tttaaataaaagttactttg 566
              ||||||||||||||||||||
Sbjct: 138765 tttaaataaaagttactttg 138746



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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 353   attcgcccgtcgccgacctcgtgc 376
             |||| |||||||||||||||||||
Sbjct: 99551 attcccccgtcgccgacctcgtgc 99528



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>emb|AL160314.7|CNS01RH3 Human chromosome 14 DNA sequence BAC C-2555K7 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 208953

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 539    aaacacagtttaaataaaag 558
              ||||||||||||||||||||
Sbjct: 130684 aaacacagtttaaataaaag 130665



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>ref|XM_672524.1| Plasmodium berghei strain ANKA translation initiation factor EF-1
           (PB000820.03.0) partial mRNA
          Length = 357

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 522 tatgttttatttctgggaaa 541
           ||||||||||||||||||||
Sbjct: 206 tatgttttatttctgggaaa 225



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>emb|AL935155.13| Mouse DNA sequence from clone RP23-334M3 on chromosome 2, complete
             sequence
          Length = 123205

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 547   tttaaataaaagttactttg 566
             ||||||||||||||||||||
Sbjct: 23794 tttaaataaaagttactttg 23813



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>emb|AL731794.13| Mouse DNA sequence from clone RP23-232L4 on chromosome X, complete
             sequence
          Length = 142298

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 522   tatgttttatttctgggaaa 541
             ||||||||||||||||||||
Sbjct: 94440 tatgttttatttctgggaaa 94421


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 87,894,332
Number of extensions: 4481012
Number of successful extensions: 95941
Number of sequences better than 10.0: 30
Number of HSP's gapped: 95941
Number of HSP's successfully gapped: 30
Length of query: 588
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 566
Effective length of database: 18,508,616,841
Effective search space: 10475877132006
Effective search space used: 10475877132006
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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