>LOC_Os05g05980:12005.t00488:unspliced-genomic DNA directed RNA polymerase, 7 kDa subunit family protein|
Length = 4006
Score = 82.2 bits (173), Expect(3) = 6e-22
Identities = 32/37 (86%), Positives = 33/37 (89%)
Frame = +2 / +1
Query: 71 VSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRR 181
V +L DCGAENTLK GDVIQCRECGYRILYKKRTRR
Sbjct: 796 VIFLSSDCGAENTLKPGDVIQCRECGYRILYKKRTRR 906
Score = 40.9 bits (83), Expect(3) = 6e-22
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2 / +3
Query: 35 PPSSMDPQQPEPVSYLCG 88
P MDPQQPEPVSYLCG
Sbjct: 519 PLRPMDPQQPEPVSYLCG 572
Score = 24.4 bits (47), Expect(3) = 6e-22
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +3 / +2
Query: 183 LFNTKLAEDKGTS 221
LFN K AED GTS
Sbjct: 2381 LFNMKRAEDMGTS 2419
Score = 67.5 bits (141), Expect(2) = 9e-12
Identities = 29/36 (80%), Positives = 30/36 (83%)
Frame = -2 / -3
Query: 177 RVRFL*RMRYPHSRHWITSPVLSVFSAPQSPHR*LT 70
RVRFL*RMR PHSRHWITSP SVFSAPQS R +T
Sbjct: 902 RVRFL*RMR*PHSRHWITSPGFSVFSAPQSEERKIT 795
Score = 25.4 bits (49), Expect(2) = 9e-12
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1 / -2
Query: 217 VPLSSASFVLNN 182
VP+SSA F+LNN
Sbjct: 2415 VPISSARFILNN 2380
Score = 57.9 bits (120), Expect(3) = 7e-10
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1 / +3
Query: 79 SMRRLRS*EHAQDRGCDPVPRVWVPHPLQEAHPQD 183
S+ RL S*EH + R CDPVP +W+ HPLQEAHP +
Sbjct: 804 SLFRLWS*EHTEARRCDPVP*MWLSHPLQEAHPPE 908
Score = 25.8 bits (50), Expect(3) = 7e-10
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +1 / +2
Query: 25 RHSTALLDGSAAAGARQLSMRR 90
R S A DGSA ARQLS+ R
Sbjct: 509 RPSAAASDGSATT*ARQLSLWR 574
Score = 22.1 bits (42), Expect(3) = 7e-10
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2 / +1
Query: 182 IVQYEAR*RQRN 217
+VQYEAR*R N
Sbjct: 2380 VVQYEAR*RYGN 2415
Score = 50.1 bits (103), Expect = 1e-05
Identities = 22/35 (62%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 193 VLNNPAGALLVEDAVPTLAALDHIPCLERVLSSAI 89
+ + PAGALLVEDA+ T ALDHI L+ VLSS I
Sbjct: 918 IKHTPAGALLVEDAIATFTALDHISWLQCVLSSTI 814
>LOC_Os01g34614:12001.t006909:unspliced-genomic DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide,|
putative, expressed
Length = 2459
Score = 79.9 bits (168), Expect(3) = 4e-21
Identities = 31/34 (91%), Positives = 31/34 (91%)
Frame = +2 / +2
Query: 80 LCGDCGAENTLKTGDVIQCRECGYRILYKKRTRR 181
L DCGAENTLK GDVIQCRECGYRILYKKRTRR
Sbjct: 620 LSSDCGAENTLKPGDVIQCRECGYRILYKKRTRR 721
Score = 40.9 bits (83), Expect(3) = 4e-21
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +2 / +2
Query: 35 PPSSMDPQQPEPVSYLCG 88
P MDPQQPEPVSYLCG
Sbjct: 149 PLRPMDPQQPEPVSYLCG 202
Score = 22.6 bits (43), Expect(3) = 4e-21
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3 / +2
Query: 183 LFNTKLAEDKG 215
LFN K AEDKG
Sbjct: 2201 LFNMKHAEDKG 2233
Score = 64.3 bits (134), Expect(2) = 7e-11
Identities = 27/30 (90%), Positives = 27/30 (90%)
Frame = -2 / -3
Query: 177 RVRFL*RMRYPHSRHWITSPVLSVFSAPQS 88
RVRFL*RMR PHSRHWITSP SVFSAPQS
Sbjct: 717 RVRFL*RMR*PHSRHWITSPGFSVFSAPQS 628
Score = 24.9 bits (48), Expect(2) = 7e-11
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -1 / -3
Query: 217 VPLSSASFVLNN 182
+PLSSA F+LNN
Sbjct: 2235 LPLSSACFILNN 2200
Score = 57.4 bits (119), Expect(2) = 4e-09
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +1 / +1
Query: 88 RLRS*EHAQDRGCDPVPRVWVPHPLQEAHPQD 183
RLRS*EH + R CDPVP +W+ HPLQEA+P +
Sbjct: 628 RLRS*EHTEARRCDPVP*MWLSHPLQEAYPPE 723
Score = 25.8 bits (50), Expect(2) = 4e-09
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1 / +1
Query: 19 PSRHSTALLDGSAAAGARQLSMRR 90
P S A DGSA ARQLS+ R
Sbjct: 133 PRSTSAAASDGSATT*ARQLSLWR 204
Score = 50.6 bits (104), Expect = 8e-06
Identities = 23/35 (65%), Positives = 26/35 (74%)
Frame = -1 / -2
Query: 193 VLNNPAGALLVEDAVPTLAALDHIPCLERVLSSAI 89
V + PAG LLVEDA+ T ALDHI L+ VLSSAI
Sbjct: 733 VKHTPAGTLLVEDAIATFTALDHISWLQCVLSSAI 629
>LOC_Os07g01450:12007.t00044:unspliced-genomic DNA directed RNA polymerase, 7 kDa subunit family protein,|
expressed
Length = 1925
Score = 54.7 bits (113), Expect(4) = 1e-15
Identities = 21/31 (67%), Positives = 23/31 (74%)
Frame = +2 / +1
Query: 89 DCGAENTLKTGDVIQCRECGYRILYKKRTRR 181
DCG E LK DV+QC ECG RIL KKRTR+
Sbjct: 607 DCGTETLLKPTDVVQCHECGCRILCKKRTRQ 699
Score = 39.6 bits (80), Expect(4) = 1e-15
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +2 / +3
Query: 26 DTLPPSSMDPQQPEPVSYLC 85
D P+ MDPQQP+PVSYLC
Sbjct: 84 DPSSPAPMDPQQPKPVSYLC 143
Score = 23.5 bits (45), Expect(4) = 1e-15
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 182 IVQYEAR*RQRNKH 223
+VQYEAR*R N H
Sbjct: 1668 VVQYEAR*R*GNGH 1709
Score = 23.5 bits (45), Expect(4) = 1e-15
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = +1 / +2
Query: 256 ECVP*DKATMEKCIIYYSACRLY 324
EC ++ KC+ YS CR++
Sbjct: 1754 ECPYQNEHIYSKCVEQYSECRIF 1822
Score = 47.3 bits (97), Expect(3) = 2e-09
Identities = 21/30 (70%), Positives = 21/30 (70%)
Frame = -2 / -1
Query: 177 RVRFL*RMRYPHSRHWITSPVLSVFSAPQS 88
RVRFL RMR PHS HW TS LS S PQS
Sbjct: 695 RVRFLQRMRQPHSWHWTTSVGLSKVSVPQS 606
Score = 31.8 bits (63), Expect(3) = 2e-09
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2 / -3
Query: 357 FYHFKPKSNGQIQPTSTVIYNTFLHCSFVSGHTL 256
+YHF+PK N +I+ + + CSF GH++
Sbjct: 1851 YYHFRPKFNEKIRHSEYCSTHLLYICSFW*GHSI 1750
Score = 23.1 bits (44), Expect(3) = 2e-09
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1 / -1
Query: 217 VPLSSASFVLNN 182
+P SSA F+LNN
Sbjct: 1703 IPSSSARFILNN 1668
Score = 33.1 bits (66), Expect(3) = 0.010
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1 / -3
Query: 178 AGALLVEDAVPTLAALDHIPCLERVLSSAI 89
AG+LL EDA T ALD+I E LSS I
Sbjct: 696 AGSLLAEDATATFMALDNISRFE*GLSSTI 607
Score = 23.5 bits (45), Expect(3) = 0.010
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1 / -2
Query: 358 VLPLQAKVQRTNTTY 314
VLPL AKVQ +TT+
Sbjct: 1852 VLPLPAKVQ*KDTTF 1808
Score = 21.7 bits (41), Expect(3) = 0.010
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2 / -2
Query: 222 CLFLCLQRASY*T 184
C F LQRASY*T
Sbjct: 1708 CPFPHLQRASY*T 1670
Score = 38.6 bits (78), Expect = 0.029
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1 / +3
Query: 88 RLRS*EHAQDRGCDPVPRVWVPHPLQEAHP 177
RL +*+ Q C PVP +W+ HPLQEA+P
Sbjct: 606 RLWN*DLTQTD*CCPVP*MWLSHPLQEANP 695
>LOC_Os12g31960:12012.t02899:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 3388
Score = 29.5 bits (58), Expect(2) = 0.78
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2 / +1
Query: 233 LVHVWSDGSVCPETKLQWRNVLYITVLVGCICPLDFG 343
L+++W GS+CP+ + +T + + LD G
Sbjct: 262 LIYIWDRGSICPKRAIHRPATCVVTQICFSVLYLDAG 372
Score = 25.4 bits (49), Expect(2) = 0.78
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1 / +3
Query: 13 TAPSRHSTALLDG 51
T+P+RH+T L+DG
Sbjct: 195 TSPTRHATHLMDG 233
>LOC_Os10g34670:12010.t02761:unspliced-genomic prefoldin subunit 5, putative, expressed|
Length = 9856
Score = 26.3 bits (51), Expect(3) = 2.0
Identities = 11/40 (27%), Positives = 15/40 (37%)
Frame = +1 / +1
Query: 226 FAVSSCLERWECVP*DKATMEKCIIYYSACRLYLSVGLWL 345
F + CL W+ V + C Y A + LWL
Sbjct: 6586 FFLGKCLVSWQSVKQQVVALSSCEAEYMAASAASTQALWL 6705
Score = 25.4 bits (49), Expect(3) = 2.0
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +1 / +2
Query: 70 RQLSMRRLRS*EHAQDRGCDPVPRVWVPHPLQEAHPQDCSIRSSLKTKEQASFAV 234
RQ ++ R R E + GC+ VPRV + P S + AS A+
Sbjct: 3371 RQAAVSRARRGEVSSYGGCEDVPRVAPAKAPRALPPATTSRHETTPAATVASLAI 3535
Score = 22.6 bits (43), Expect(3) = 2.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2 / +3
Query: 5 P*LQPLRDTLPPSSMDP 55
P L PL+ T PP + P
Sbjct: 30 PPLSPLKSTSPPRPLHP 80
>LOC_Os12g09260:12012.t00805:unspliced-genomic retrotransposon protein, putative, unclassified|
Length = 4176
Score = 26.7 bits (52), Expect(2) = 3.0
Identities = 18/77 (23%), Positives = 31/77 (40%)
Frame = +1 / +2
Query: 4 TLATAPSRHSTALLDGSAAAGARQLSMRRLRS*EHAQDRGCDPVPRVWVPHPLQEAHPQD 183
+++ S + +G + RQ ++ R R E + GC+ VPRV + P
Sbjct: 521 SISLGSSGRPLKVTEGRGSHLPRQAAVSRARRGEVSSYGGCEDVPRVAPAEAPRALPPAT 700
Query: 184 CSIRSSLKTKEQASFAV 234
S + AS A+
Sbjct: 701 TSRHETTPAATVASLAI 751
Score = 26.3 bits (51), Expect(2) = 3.0
Identities = 11/40 (27%), Positives = 15/40 (37%)
Frame = +1 / +1
Query: 226 FAVSSCLERWECVP*DKATMEKCIIYYSACRLYLSVGLWL 345
F + CL W+ V + C Y A + LWL
Sbjct: 3754 FFLGKCLVSWQSVKQQVVALSSCEAEYMAASAASTQALWL 3873
>LOC_Os01g22230:12001.t01958:unspliced-genomic peroxidase 1 precursor, putative, expressed|
Length = 4293
Score = 25.4 bits (49), Expect(2) = 7.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +2 / +3
Query: 11 LQPLRDTLPPSSMDPQQP 64
L P RDTL + MDP P
Sbjct: 3678 LCPTRDTLATTPMDPDTP 3731
Score = 22.1 bits (42), Expect(2) = 7.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1 / +2
Query: 52 SAAAGARQLSMRRLRS*EHAQDRGCDPV 135
+AAAG L +R+ + E +R DPV
Sbjct: 3758 AAAAGEGALLLRQPAAGERHHERAGDPV 3841
>LOC_Os06g11400:12006.t01017:unspliced-genomic threonine endopeptidase, putative, expressed|
Length = 2654
Score = 30.4 bits (60), Expect = 8.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3 / +3
Query: 494 FFFFCDQPTGHFIA 453
FFFFC P GHF++
Sbjct: 303 FFFFCVNPDGHFVS 344
Database: tigr.seq.out
Posted date: Jul 20, 2007 8:58 AM
Number of letters in database: 166,841,660
Number of sequences in database: 56,278
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 192,481,499
Number of extensions: 3007952
Number of successful extensions: 11569
Number of sequences better than 10.0: 33
Length of query: 166
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 118
Effective length of database: 52,912,542
Effective search space: 6243679956
Effective search space used: 6243679956
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)