ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf65l14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT831887.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA004G05, full insert sequence Length = 880 Score = 220 bits (111), Expect = 8e-54 Identities = 261/311 (83%) Strand = Plus / Plus Query: 247 agcgagatggccggaaggctcctcgggcaactcctcgtcatgggtggcgccgtcgtcggc 306 ||||||||||| | ||||| |||| | | ||||||||||| || ||| |||| | ||| Sbjct: 304 agcgagatggctgctaggcttctcgcgaatctcctcgtcatcggcggcaccgtgctgggc 363 Query: 307 agggccgtcgtgcaggcctaccgccaggccatcgtcaatgcacagcgaaccggagctgcc 366 ||||||| || ||||| || ||||| ||||||||||||||| | ||| ||||||||| Sbjct: 364 agggccgcggtccaggcgtatcgccaagccatcgtcaatgcaaacaaaactggagctgcc 423 Query: 367 caggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaagaagcccgg 426 ||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 424 caggaagctataaatggtattcgaagggccagcaaggccatgactgagcaagaagcccgg 483 Query: 427 caaatattgggtatcagtgaaaagacgagttgggaagagatcgtgcagaagtatgatacg 486 |||||| | |||||||| |||||| ||| ||||||||||||||| ||||| || ||||| Sbjct: 484 caaatactaggtatcagcgaaaagtcgacttgggaagagatcgtccagaaatacgatact 543 Query: 487 atgtttgagaagaacgccaagagcggaagcttctatctgcagtcaaaagtccaccgagcg 546 |||||||||| ||| || |||| || ||||||||||| ||||| ||||| || || || Sbjct: 544 atgtttgagaggaatgctaagaatgggagcttctatctccagtcgaaagttcatcgggct 603 Query: 547 aaagaatgtct 557 ||||||||||| Sbjct: 604 aaagaatgtct 614
>ref|NM_001052003.1| Oryza sativa (japonica cultivar-group) Os01g0960800 (Os01g0960800) mRNA, partial cds Length = 846 Score = 220 bits (111), Expect = 8e-54 Identities = 261/311 (83%) Strand = Plus / Plus Query: 247 agcgagatggccggaaggctcctcgggcaactcctcgtcatgggtggcgccgtcgtcggc 306 ||||||||||| | ||||| |||| | | ||||||||||| || ||| |||| | ||| Sbjct: 266 agcgagatggctgctaggcttctcgcgaatctcctcgtcatcggcggcaccgtgctgggc 325 Query: 307 agggccgtcgtgcaggcctaccgccaggccatcgtcaatgcacagcgaaccggagctgcc 366 ||||||| || ||||| || ||||| ||||||||||||||| | ||| ||||||||| Sbjct: 326 agggccgcggtccaggcgtatcgccaagccatcgtcaatgcaaacaaaactggagctgcc 385 Query: 367 caggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaagaagcccgg 426 ||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 386 caggaagctataaatggtattcgaagggccagcaaggccatgactgagcaagaagcccgg 445 Query: 427 caaatattgggtatcagtgaaaagacgagttgggaagagatcgtgcagaagtatgatacg 486 |||||| | |||||||| |||||| ||| ||||||||||||||| ||||| || ||||| Sbjct: 446 caaatactaggtatcagcgaaaagtcgacttgggaagagatcgtccagaaatacgatact 505 Query: 487 atgtttgagaagaacgccaagagcggaagcttctatctgcagtcaaaagtccaccgagcg 546 |||||||||| ||| || |||| || ||||||||||| ||||| ||||| || || || Sbjct: 506 atgtttgagaggaatgctaagaatgggagcttctatctccagtcgaaagttcatcgggct 565 Query: 547 aaagaatgtct 557 ||||||||||| Sbjct: 566 aaagaatgtct 576
>dbj|AK073977.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075P16, full insert sequence Length = 848 Score = 220 bits (111), Expect = 8e-54 Identities = 261/311 (83%) Strand = Plus / Plus Query: 247 agcgagatggccggaaggctcctcgggcaactcctcgtcatgggtggcgccgtcgtcggc 306 ||||||||||| | ||||| |||| | | ||||||||||| || ||| |||| | ||| Sbjct: 268 agcgagatggctgctaggcttctcgcgaatctcctcgtcatcggcggcaccgtgctgggc 327 Query: 307 agggccgtcgtgcaggcctaccgccaggccatcgtcaatgcacagcgaaccggagctgcc 366 ||||||| || ||||| || ||||| ||||||||||||||| | ||| ||||||||| Sbjct: 328 agggccgcggtccaggcgtatcgccaagccatcgtcaatgcaaacaaaactggagctgcc 387 Query: 367 caggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaagaagcccgg 426 ||||||||| | || |||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 388 caggaagctataaatggtattcgaagggccagcaaggccatgactgagcaagaagcccgg 447 Query: 427 caaatattgggtatcagtgaaaagacgagttgggaagagatcgtgcagaagtatgatacg 486 |||||| | |||||||| |||||| ||| ||||||||||||||| ||||| || ||||| Sbjct: 448 caaatactaggtatcagcgaaaagtcgacttgggaagagatcgtccagaaatacgatact 507 Query: 487 atgtttgagaagaacgccaagagcggaagcttctatctgcagtcaaaagtccaccgagcg 546 |||||||||| ||| || |||| || ||||||||||| ||||| ||||| || || || Sbjct: 508 atgtttgagaggaatgctaagaatgggagcttctatctccagtcgaaagttcatcgggct 567 Query: 547 aaagaatgtct 557 ||||||||||| Sbjct: 568 aaagaatgtct 578
>gb|AY106743.1| Zea mays PCO102668 mRNA sequence Length = 793 Score = 200 bits (101), Expect = 7e-48 Identities = 236/281 (83%) Strand = Plus / Plus Query: 281 tcgtcatgggtggcgccgtcgtcggcagggccgtcgtgcaggcctaccgccaggccatcg 340 |||||||||| || |||| || ||||||||| | | |||||||||||||||||||||| Sbjct: 212 tcgtcatgggcggaaccgtggttggcagggccatgctccaggcctaccgccaggccatcg 271 Query: 341 tcaatgcacagcgaaccggagctgcccaggaagctgtcaacggtattcgaagggctagca 400 |||||||| | ||| ||||||||||| |||||| | || |||||| || ||||||||| Sbjct: 272 tcaatgcaaacaaaactggagctgcccaagaagctataaatggtattagacgggctagca 331 Query: 401 aggccatgaccgagcaagaagcccggcaaatattgggtatcagtgaaaagacgagttggg 460 |||||||||| |||||||||||||||||||| | |||||||||||||| ||| |||| Sbjct: 332 aggccatgactgagcaagaagcccggcaaattcttggtatcagtgaaaattcgacgtggg 391 Query: 461 aagagatcgtgcagaagtatgatacgatgtttgagaagaacgccaagagcggaagcttct 520 ||||||| || |||||||| || || |||||||||| ||| ||||| ||| ||||||| Sbjct: 392 aagagattgtccagaagtacgacacaatgtttgagaggaataacaagaacggcagcttct 451 Query: 521 atctgcagtcaaaagtccaccgagcgaaagaatgtctggaa 561 |||| |||||||| || || ||||||||||||| |||||| Sbjct: 452 atctccagtcaaaggttcatagagcgaaagaatgcctggaa 492
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 145 bits (73), Expect = 4e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 358 ggagctgcccaggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaa 417 |||||||||||||||||| | || |||||||||||||| |||||||||||||| |||||| Sbjct: 42354371 ggagctgcccaggaagctataaatggtattcgaagggccagcaaggccatgactgagcaa 42354312 Query: 418 gaagcccggcaaatattgggtatcagtgaaaagacgagttgggaagagatcgt 470 ||||||||||||||| | |||||||| |||||| ||| ||||||||||||||| Sbjct: 42354311 gaagcccggcaaatactaggtatcagcgaaaagtcgacttgggaagagatcgt 42354259 Score = 56.0 bits (28), Expect = 3e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 470 tgcagaagtatgatacgatgtttgagaagaacgccaagagcggaagcttctatctgcagt 529 ||||||| || ||||| |||||||||| ||| || |||| || ||||||||||| |||| Sbjct: 42354116 tgcagaaatacgatactatgtttgagaggaatgctaagaatgggagcttctatctccagt 42354057 Query: 530 caaaagtccaccgagcgaaagaatgtct 557 | ||||| || || || ||||||||||| Sbjct: 42354056 cgaaagttcatcgggctaaagaatgtct 42354029
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 145 bits (73), Expect = 4e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 358 ggagctgcccaggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaa 417 |||||||||||||||||| | || |||||||||||||| |||||||||||||| |||||| Sbjct: 126328 ggagctgcccaggaagctataaatggtattcgaagggccagcaaggccatgactgagcaa 126269 Query: 418 gaagcccggcaaatattgggtatcagtgaaaagacgagttgggaagagatcgt 470 ||||||||||||||| | |||||||| |||||| ||| ||||||||||||||| Sbjct: 126268 gaagcccggcaaatactaggtatcagcgaaaagtcgacttgggaagagatcgt 126216 Score = 56.0 bits (28), Expect = 3e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 470 tgcagaagtatgatacgatgtttgagaagaacgccaagagcggaagcttctatctgcagt 529 ||||||| || ||||| |||||||||| ||| || |||| || ||||||||||| |||| Sbjct: 126073 tgcagaaatacgatactatgtttgagaggaatgctaagaatgggagcttctatctccagt 126014 Query: 530 caaaagtccaccgagcgaaagaatgtct 557 | ||||| || || || ||||||||||| Sbjct: 126013 cgaaagttcatcgggctaaagaatgtct 125986
>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0483G10 Length = 190721 Score = 145 bits (73), Expect = 4e-31 Identities = 103/113 (91%) Strand = Plus / Minus Query: 358 ggagctgcccaggaagctgtcaacggtattcgaagggctagcaaggccatgaccgagcaa 417 |||||||||||||||||| | || |||||||||||||| |||||||||||||| |||||| Sbjct: 13709 ggagctgcccaggaagctataaatggtattcgaagggccagcaaggccatgactgagcaa 13650 Query: 418 gaagcccggcaaatattgggtatcagtgaaaagacgagttgggaagagatcgt 470 ||||||||||||||| | |||||||| |||||| ||| ||||||||||||||| Sbjct: 13649 gaagcccggcaaatactaggtatcagcgaaaagtcgacttgggaagagatcgt 13597 Score = 56.0 bits (28), Expect = 3e-04 Identities = 73/88 (82%) Strand = Plus / Minus Query: 470 tgcagaagtatgatacgatgtttgagaagaacgccaagagcggaagcttctatctgcagt 529 ||||||| || ||||| |||||||||| ||| || |||| || ||||||||||| |||| Sbjct: 13454 tgcagaaatacgatactatgtttgagaggaatgctaagaatgggagcttctatctccagt 13395 Query: 530 caaaagtccaccgagcgaaagaatgtct 557 | ||||| || || || ||||||||||| Sbjct: 13394 cgaaagttcatcgggctaaagaatgtct 13367
>emb|CT829860.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104G13, full insert sequence Length = 1482 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 175 aatctagggtttccgccgccgccgg 199 ||||||||||||||||||||||||| Sbjct: 198 aatctagggtttccgccgccgccgg 222
>ref|NM_001072544.1| Oryza sativa (japonica cultivar-group) Os12g0118800 (Os12g0118800) mRNA, complete cds Length = 3264 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 175 aatctagggtttccgccgccgccgg 199 ||||||||||||||||||||||||| Sbjct: 198 aatctagggtttccgccgccgccgg 222
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Minus Query: 175 aatctagggtttccgccgccgccgg 199 ||||||||||||||||||||||||| Sbjct: 926696 aatctagggtttccgccgccgccgg 926672
>dbj|AK063302.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F04, full insert sequence Length = 3264 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 175 aatctagggtttccgccgccgccgg 199 ||||||||||||||||||||||||| Sbjct: 198 aatctagggtttccgccgccgccgg 222
>emb|BX000505.1|CNS08CDV Oryza sativa chromosome 12, . BAC OJ1126_F08 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 134217 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Minus Query: 175 aatctagggtttccgccgccgccgg 199 ||||||||||||||||||||||||| Sbjct: 64281 aatctagggtttccgccgccgccgg 64257
>gb|AY439411.1| Armigeres subalbatus ASAP ID: 40903 granulocyte-macrophage colony-stimulating factor signalling molecule mRNA sequence Length = 490 Score = 46.1 bits (23), Expect = 0.25 Identities = 32/35 (91%) Strand = Plus / Plus Query: 517 ttctatctgcagtcaaaagtccaccgagcgaaaga 551 |||||||||||||||||||| |||||||||||| Sbjct: 278 ttctatctgcagtcaaaagtattccgagcgaaaga 312
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 cgccgtcgtcggcagggccgtc 315 |||||||||||||||||||||| Sbjct: 167827 cgccgtcgtcggcagggccgtc 167848
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 caggcctaccgccaggccatcg 340 |||||||||||||||||||||| Sbjct: 197199 caggcctaccgccaggccatcg 197178
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 241 agccagagcgagatggccggaa 262 |||||||||||||||||||||| Sbjct: 405228 agccagagcgagatggccggaa 405249
>gb|L43365.1|ADRORF1GA Human adenovirus type 2 pVIII protein (ORF 1) gene, complete cds, fiber protein (ORF 5) gene, complete cds Length = 2026 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 232 cagaaccagagccagagcgaga 253 |||||||||||||||||||||| Sbjct: 1110 cagaaccagagccagagcgaga 1089
>ref|XM_515334.2| PREDICTED: Pan troglodytes proopiomelanocortin, transcript variant 4 (POMC), mRNA Length = 1248 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 813 ggcgccgtcatcggcagggccgtcg 789
>ref|XM_001147888.1| PREDICTED: Pan troglodytes proopiomelanocortin, transcript variant 3 (POMC), mRNA Length = 1158 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 723 ggcgccgtcatcggcagggccgtcg 699
>ref|XM_001147824.1| PREDICTED: Pan troglodytes proopiomelanocortin, transcript variant 2 (POMC), mRNA Length = 1298 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 863 ggcgccgtcatcggcagggccgtcg 839
>ref|XM_001147743.1| PREDICTED: Pan troglodytes proopiomelanocortin, transcript variant 1 (POMC), mRNA Length = 1205 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 770 ggcgccgtcatcggcagggccgtcg 746
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 18 ctccggcaccaggcagagccc 38 ||||||||||||||||||||| Sbjct: 874319 ctccggcaccaggcagagccc 874299
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 316 gtgcaggcctaccgccaggcc 336 ||||||||||||||||||||| Sbjct: 5564516 gtgcaggcctaccgccaggcc 5564496
>gb|AC100893.13| Mus musculus chromosome 8, clone RP23-68I8, complete sequence Length = 253420 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 gcaccaggcagagcccagagc 43 ||||||||||||||||||||| Sbjct: 81774 gcaccaggcagagcccagagc 81754
>gb|AC129331.4| Mus musculus BAC clone RP23-75C8 from chromosome 8, complete sequence Length = 257765 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 gcaccaggcagagcccagagc 43 ||||||||||||||||||||| Sbjct: 237556 gcaccaggcagagcccagagc 237536
>gb|AY091993.1| Pongo pygmaeus proopiomelanocortin gene, partial cds Length = 496 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 373 ggcgccgtcatcggcagggccgtcg 349
>gb|AY091992.1| Gorilla gorilla proopiomelanocortin gene, partial cds Length = 559 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 436 ggcgccgtcatcggcagggccgtcg 412
>gb|AY091991.1| Pan troglodytes proopiomelanocortin gene, partial cds Length = 562 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 292 ggcgccgtcgtcggcagggccgtcg 316 ||||||||| ||||||||||||||| Sbjct: 439 ggcgccgtcatcggcagggccgtcg 415
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 cctcgtcatgggtggcgccgtcgtcggca 307 |||||||||||| | |||||||||||||| Sbjct: 1831079 cctcgtcatgggcgtcgccgtcgtcggca 1831107
>emb|BX294113.7| Zebrafish DNA sequence from clone DKEYP-73G8 in linkage group 24, complete sequence Length = 199820 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 713 ctttgactcgaataatatata 733 ||||||||||||||||||||| Sbjct: 61081 ctttgactcgaataatatata 61101 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 157,957,142 Number of extensions: 8820137 Number of successful extensions: 172737 Number of sequences better than 10.0: 30 Number of HSP's gapped: 172737 Number of HSP's successfully gapped: 33 Length of query: 1046 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1023 Effective length of database: 18,503,978,556 Effective search space: 18929570062788 Effective search space used: 18929570062788 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
