Clone Information

BLAST Search Result

Clone Name	FLbaf68j10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	Q8W425:PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit ...	667	0.0
2	Q93Y35:PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory...	601	e-171
3	Q99JI4:PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit ...	404	e-112
4	Q15008:PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit ...	400	e-111
5	Q3T0B2:PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit ...	398	e-110
6	Q9V3G7:PSMD6_DROME 26S proteasome non-ATPase regulatory subunit ...	387	e-107
7	Q20585:PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit ...	324	7e-88
8	Q10335:RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn...	291	5e-78
9	Q06103:RPN7_YEAST 26S proteasome regulatory subunit RPN7 - Sacch...	249	2e-65
10	Q6NRT5:CSN1_XENLA COP9 signalosome complex subunit 1 - Xenopus l...	99	6e-20
11	Q99LD4:CSN1_MOUSE COP9 signalosome complex subunit 1 - Mus muscu...	99	6e-20
12	P97834:CSN1_RAT COP9 signalosome complex subunit 1 - Rattus norv...	98	8e-20
13	Q13098:CSN1_HUMAN COP9 signalosome complex subunit 1 - Homo sapi...	97	1e-19
14	Q9VVU5:CSN1_DROME COP9 signalosome complex subunit 1b - Drosophi...	87	2e-16
15	P45432:CSN1_ARATH COP9 signalosome complex subunit 1 - Arabidops...	85	9e-16
16	O94308:CSN1_SCHPO COP9 signalosome complex subunit 1 - Schizosac...	59	5e-08
17	Q94899:CSN2_DROME COP9 signalosome complex subunit 2 - Drosophil...	44	0.002
18	Q9D8W5:PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit ...	40	0.020
19	Q5RBI3:PSD12_PONPY 26S proteasome non-ATPase regulatory subunit ...	40	0.026
20	O00232:PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit ...	40	0.026
21	Q2KJ25:PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit ...	40	0.026
22	Q7Z406:MYH14_HUMAN Myosin-14 - Homo sapiens (Human)	40	0.026
23	Q5JHN1:RAD50_PYRKO DNA double-strand break repair rad50 ATPase -...	37	0.22
24	P58301:RAD50_PYRFU DNA double-strand break repair rad50 ATPase -...	37	0.22
25	P35594:CLPE_STRPN ATP-dependent Clp protease ATP-binding subunit...	34	1.4
26	Q7TT49:MRCKB_RAT Serine/threonine-protein kinase MRCK beta - Rat...	34	1.8
27	Q10251:IF2P_SCHPO Eukaryotic translation initiation factor 5B - ...	34	1.8
28	Q7TT50:MRCKB_MOUSE Serine/threonine-protein kinase MRCK beta - M...	33	2.4
29	Q9YFZ1:RAD50_AERPE DNA double-strand break repair rad50 ATPase -...	33	3.1
30	Q9H1U4:MEGF9_HUMAN Multiple epidermal growth factor-like domains...	33	3.1
31	P34551:SRX10_CAEEL Serpentine receptor class XA 10 - Caenorhabdi...	28	3.7
32	P63389:YHES_ECOLI Uncharacterized ABC transporter ATP-binding pr...	33	4.1
33	P63390:YHES_ECO57 Uncharacterized ABC transporter ATP-binding pr...	33	4.1
34	Q0VDN7:RUND1_MOUSE RUN domain-containing protein 1 - Mus musculu...	33	4.1
35	Q6FR93:ATG20_CANGA Autophagy-related protein 20 - Candida glabra...	33	4.1
36	Q97GM6:MUTS2_CLOAB MutS2 protein - Clostridium acetobutylicum	32	5.3
37	P31794:ENV_MLVRK Envelope glycoprotein precursor - Radiation mur...	32	5.3
38	P11268:ENV_MLVRD Envelope glycoprotein precursor - Radiation mur...	32	6.9
39	P03385:ENV_MLVMO Envelope glycoprotein precursor - Moloney murin...	32	6.9
40	P15073:ENV_MCFF Envelope glycoprotein precursor - Mink cell focu...	32	6.9
41	P08447:ATPF_SYNP6 ATP synthase B chain - Synechococcus sp. (stra...	32	6.9
42	Q5FWH2:UNKL_MOUSE RING finger protein unkempt-like - Mus musculu...	32	9.1
43	Q6P9I7:SMC6_XENLA Structural maintenance of chromosomes protein ...	32	9.1
44	Q96C34:RUND1_HUMAN RUN domain-containing protein 1 - Homo sapien...	32	9.1
45	Q313Q5:MURD_DESDG UDP-N-acetylmuramoylalanine--D-glutamate ligas...	32	9.1
46	P08360:ENV_MLVCB Envelope glycoprotein precursor - Cas-Br-E muri...	32	9.1
47	Q8Y7G1:DPO3_LISMO DNA polymerase III polC-type - Listeria monocy...	32	9.1
48	Q720A2:DPO3_LISMF DNA polymerase III polC-type - Listeria monocy...	32	9.1
49	Q92C34:DPO3_LISIN DNA polymerase III polC-type - Listeria innocua	32	9.1

>Q8W425:PSMD6_ORYSJ 26S proteasome non-ATPase regulatory subunit 6 - Oryza sativa subsp.|
            japonica (Rice)
          Length = 389
 Score =  667 bits (1721), Expect = 0.0
 Identities = 339/364 (93%), Positives = 351/364 (96%)
 Frame = +2

Query: 161  SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 340
            SHPDVDDL+KVD+R+DVL+AVKSDDMA L+ESL A GVLE DAALLAEMR RI+EEIRKL
Sbjct: 25   SHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDAALLAEMRGRIEEEIRKL 84

Query: 341  DEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYT 520
            DEKIADAEENLGESEVREAHLAKSLYF++VGEKEKALEQLKVTEGKTVA+GQKMDLVF+T
Sbjct: 85   DEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALEQLKVTEGKTVAVGQKMDLVFHT 144

Query: 521  LQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDS 700
            LQIG FYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKA SLFLDS
Sbjct: 145  LQIGFFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAASLFLDS 204

Query: 701  ISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLY 880
            ISTFTTYELFPYDTFIFYTVLTS+ISLDRVSLK KVVDAPEILAVIGKVPHLSEFLNSLY
Sbjct: 205  ISTFTTYELFPYDTFIFYTVLTSVISLDRVSLKAKVVDAPEILAVIGKVPHLSEFLNSLY 264

Query: 881  NCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 1060
            NCQYKSFF AFSGL EQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG
Sbjct: 265  NCQYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 324

Query: 1061 VTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLS 1240
            VTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPD RNAFYQ+TIKQGDFLLNRIQKLS
Sbjct: 325  VTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLS 384

Query: 1241 RVID 1252
            RVID
Sbjct: 385  RVID 388

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>Q93Y35:PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6 - Arabidopsis|
            thaliana (Mouse-ear cress)
          Length = 387

 Score =  601 bits (1550), Expect = e-171
 Identities = 295/364 (81%), Positives = 334/364 (91%)
 Frame = +2

Query: 161  SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 340
            +HPDV D+ KV ++S+VL  ++S  MAPL+E+L A+ VL+ D +LL  MRA  +EE++KL
Sbjct: 23   THPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKL 82

Query: 341  DEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYT 520
            DEKIADAEENLGESEVREAHLAK+LYF+++ +KEKALEQLK+TEGKTVA+GQKMD+VFYT
Sbjct: 83   DEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYT 142

Query: 521  LQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDS 700
            LQ+  FYMDFDL+SKSIDKAKKLFEEGGDWERKNRLKVYEGLYCM+TRNFKKA SLFLDS
Sbjct: 143  LQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDS 202

Query: 701  ISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLY 880
            ISTFTTYE+FPY+TFIFYTVLTSII+LDRVSLKQKVVDAPEIL V+GK+P LSEFLNSLY
Sbjct: 203  ISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLY 262

Query: 881  NCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 1060
             CQYK+FF AF+G+  QIK DRYL PHFR+YMREVRTVVYSQFLESYKSVT+EAMA AFG
Sbjct: 263  ECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFG 322

Query: 1061 VTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLS 1240
            V+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPD +NA YQ+TIKQGDFLLNRIQKLS
Sbjct: 323  VSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLS 382

Query: 1241 RVID 1252
            RVID
Sbjct: 383  RVID 386

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>Q99JI4:PSMD6_MOUSE 26S proteasome non-ATPase regulatory subunit 6 - Mus musculus (Mouse)|
          Length = 389

 Score =  404 bits (1037), Expect = e-112
 Identities = 193/352 (54%), Positives = 273/352 (77%)
 Frame = +2

Query: 197  IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLG 376
            +R ++++AV+ ++MAP +E+L  +   + D  LL++M+   +EE+++LDE++ DAE+NLG
Sbjct: 37   VREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLG 96

Query: 377  ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDL 556
            ESE+R+A +AK+ Y  ++G+KE AL   + T  KTVA+G ++D+VFY L+IGLFYMD DL
Sbjct: 97   ESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDL 156

Query: 557  ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDSISTFTTYELFPY 736
            I+++ +KAK L EEGGDW+R+NRLKVY+GLYC+A R+FK+A  LFLD++STFT+YEL  Y
Sbjct: 157  ITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216

Query: 737  DTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFS 916
             TF+ YTV  S+I+L+R  L++KV+   EIL V+  +P + ++L SLY C+Y  FF + +
Sbjct: 217  KTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276

Query: 917  GLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSR 1096
             + +++K D    PH+RYY+RE+R   YSQ LESY+S+T+  MA AFGV VDFIDQELSR
Sbjct: 277  IVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSR 336

Query: 1097 FIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVID 1252
            FIAAG+LHCKIDKV  ++ETNRPD +N  YQ TIK+GD LLNR+QKLSRVI+
Sbjct: 337  FIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVIN 388

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>Q15008:PSMD6_HUMAN 26S proteasome non-ATPase regulatory subunit 6 - Homo sapiens (Human)|
          Length = 389

 Score =  400 bits (1028), Expect = e-111
 Identities = 191/352 (54%), Positives = 272/352 (77%)
 Frame = +2

Query: 197  IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLG 376
            +R ++++AV+ ++MAP +E+L  +   + D  LL +M+   ++E+++LDE++ DAE+NLG
Sbjct: 37   VRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLG 96

Query: 377  ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDL 556
            ESE+R+A +AK+ Y  ++G+KE AL   + T  KTVA+G ++D+VFY L+IGLFYMD DL
Sbjct: 97   ESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDL 156

Query: 557  ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDSISTFTTYELFPY 736
            I+++ +KAK L EEGGDW+R+NRLKVY+GLYC+A R+FK+A  LFLD++STFT+YEL  Y
Sbjct: 157  ITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216

Query: 737  DTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFS 916
             TF+ YTV  S+I+L+R  L++KV+   EIL V+  +P + ++L SLY C+Y  FF + +
Sbjct: 217  KTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276

Query: 917  GLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSR 1096
             + +++K D    PH+RYY+RE+R   YSQ LESY+S+T+  MA AFGV V+FIDQELSR
Sbjct: 277  VVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSR 336

Query: 1097 FIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVID 1252
            FIAAG+LHCKIDKV  ++ETNRPD +N  YQ TIK+GD LLNR+QKLSRVI+
Sbjct: 337  FIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVIN 388

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>Q3T0B2:PSMD6_BOVIN 26S proteasome non-ATPase regulatory subunit 6 - Bos taurus (Bovine)|
          Length = 389

 Score =  398 bits (1022), Expect = e-110
 Identities = 191/352 (54%), Positives = 271/352 (76%)
 Frame = +2

Query: 197  IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLG 376
            +R ++++AV+ ++MAP +E+L  +   + D  LL +M+   ++E+++LDE++ DAE+NLG
Sbjct: 37   VRDELMAAVRDNNMAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLG 96

Query: 377  ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDL 556
            ESE+R+A +AK+ Y  ++G+KE AL   + T  KTVA+G ++D+VFY L+IGLFYMD DL
Sbjct: 97   ESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDL 156

Query: 557  ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDSISTFTTYELFPY 736
            I+++ +KAK L EEGGDW+R+NRLKVY+GLYC+A R+FK+A  LFLD++STFT+YEL  Y
Sbjct: 157  ITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDY 216

Query: 737  DTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFS 916
             TF+ YTV  S+I+L+R  L++KV+   EIL V+  +P + ++L SLY C+Y  FF + +
Sbjct: 217  KTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLA 276

Query: 917  GLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSR 1096
             + +++K D    PH+RYY+RE+R   YSQ LESY+S+T+  MA AFGV V+FIDQELSR
Sbjct: 277  IVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSR 336

Query: 1097 FIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVID 1252
            FIAAG+LHCKIDKV  V+ETNRPD +N  YQ TIK+G  LLNR+QKLSRVI+
Sbjct: 337  FIAAGRLHCKIDKVNEVVETNRPDSKNWQYQETIKKGGLLLNRVQKLSRVIN 388

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>Q9V3G7:PSMD6_DROME 26S proteasome non-ATPase regulatory subunit 6 - Drosophila|
            melanogaster (Fruit fly)
          Length = 389

 Score =  387 bits (995), Expect = e-107
 Identities = 184/352 (52%), Positives = 268/352 (76%)
 Frame = +2

Query: 197  IRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLG 376
            +++ +L A+++++MAP +E + +      D  LLA M+     E+ +LD  I DAE+NLG
Sbjct: 37   LKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLG 96

Query: 377  ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDL 556
            E EVREA+L KS Y  ++G+K  A    + T  KTV++G ++D+VF+ +++GLFY+D DL
Sbjct: 97   EMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDL 156

Query: 557  ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDSISTFTTYELFPY 736
            I+++IDKAK L EEGGDW+R+NRLKVY+G+Y +A R+FK A + FLD++STFT+YEL  Y
Sbjct: 157  ITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDY 216

Query: 737  DTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFS 916
             TF+ YTV  ++I+L R  L+ KV+   EI  V+  +P + +FL SLYNCQY++F+V  +
Sbjct: 217  PTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLA 276

Query: 917  GLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSR 1096
            G+ +Q++LD  + PH+RYY+RE+R + Y+Q LESY+S+T++ MA +FGVTV++IDQEL+R
Sbjct: 277  GVEKQLRLDYLIHPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELAR 336

Query: 1097 FIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVID 1252
            FIAAG+LH K+D+V G++ETNRPD +N  YQ+TIKQGD LLNRIQKLSRVI+
Sbjct: 337  FIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVIN 388

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>Q20585:PSMD6_CAEEL 26S proteasome non-ATPase regulatory subunit 6 - Caenorhabditis|
            elegans
          Length = 410

 Score =  324 bits (830), Expect = 7e-88
 Identities = 168/371 (45%), Positives = 238/371 (64%), Gaps = 7/371 (1%)
 Frame = +2

Query: 161  SHPDVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKL 340
            +HP+VD   K      +   +K  DMAP +E + A   +  DA  LA M+A   ++I ++
Sbjct: 39   NHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEI 98

Query: 341  DEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYT 520
              ++ DAE+NLGESEVR+  L K  Y+ ++G+K+ AL+    T  KTV +G ++D+VF  
Sbjct: 99   TAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAM 158

Query: 521  LQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDS 700
            +++GLF++D  LI+K I KAK+L E+GGDWERKNRL+ YE LY M+ R+F  A  LFL++
Sbjct: 159  IRVGLFFLDHHLINKFITKAKELMEQGGDWERKNRLRSYEALYRMSVRDFAGAADLFLEA 218

Query: 701  ISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVI------GKVPHLSE 862
            + TF +YEL  Y+  I YTV+T+  +LDR  L+ KV+   E+   +      G +  + E
Sbjct: 219  VPTFGSYELMTYENLILYTVITTTFALDRPDLRTKVIRCNEVQEQLTGGGLNGTLIPVRE 278

Query: 863  FLNSLYNCQYKSFFVAFSGL-MEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTME 1039
            +L S Y+C Y  FF+  + L  E+ K DRYL PHF YY R +R   Y QFL  YK+V ++
Sbjct: 279  YLESYYDCHYDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRID 338

Query: 1040 AMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLL 1219
             MA  FGV+  FID+EL R IA G+L C+ID V GV+E N  D +N  Y++ IK GD LL
Sbjct: 339  MMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDILL 398

Query: 1220 NRIQKLSRVID 1252
            NRIQKL+RVI+
Sbjct: 399  NRIQKLARVIN 409

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>Q10335:RPN7_SCHPO Probable 26S proteasome regulatory subunit rpn7 - Schizosaccharomyces|
            pombe (Fission yeast)
          Length = 409

 Score =  291 bits (745), Expect = 5e-78
 Identities = 144/355 (40%), Positives = 233/355 (65%), Gaps = 8/355 (2%)
 Frame = +2

Query: 209  VLSAVKSDDMAPLFESLA----ATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLG 376
            + SA++  D+APL++ L+     +  ++ D+  L  M  + +E++ + D+ I DA+E  G
Sbjct: 48   LFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNG 107

Query: 377  ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDL 556
            E E+ EA   K+ Y+  + ++E+ ++    T  +    G K+D++F  +++   Y D  +
Sbjct: 108  EHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVYADMRV 167

Query: 557  ISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATSLFLDSISTFTTYELFPY 736
            + + ++K K L E+GGDWERKNRLK Y+G+Y M+ RNF  A  L LD +STF++ EL PY
Sbjct: 168  VGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPY 227

Query: 737  DTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEF---LNSLYNCQYKSFFV 907
               + Y V++  ISLDRV +K K+VD+PE+LAV+ +   +S     +NSLY C Y  FF 
Sbjct: 228  YDVVRYAVISGAISLDRVDVKTKIVDSPEVLAVLPQNESMSSLEACINSLYLCDYSGFFR 287

Query: 908  AFSGL-MEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQ 1084
              + + +  +K D++L  H+RYY+RE+R   Y+Q LESY+++++++MA++FGV+VD+ID+
Sbjct: 288  TLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASFGVSVDYIDR 347

Query: 1085 ELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVI 1249
            +L+ FI   KL+C ID+V GV+ TNRPDE+N  YQ  +KQGD LLN++QK    +
Sbjct: 348  DLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQKYQATV 402

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>Q06103:RPN7_YEAST 26S proteasome regulatory subunit RPN7 - Saccharomyces cerevisiae|
            (Baker's yeast)
          Length = 429

 Score =  249 bits (637), Expect = 2e-65
 Identities = 132/372 (35%), Positives = 221/372 (59%), Gaps = 25/372 (6%)
 Frame = +2

Query: 209  VLSAVKSDDMAPLFESLAATGVLEP--------------------DAALLAEMRARIDEE 328
            VL+ +K ++MAP ++ L    ++                      D  L  E+  + + +
Sbjct: 50   VLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESK 109

Query: 329  IRKLDEKIADAEEN-LGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMD 505
            I++L+EKI   EE+  GE E  +A +    Y+ ++G+K+ A + L  +  K ++ G K+D
Sbjct: 110  IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID 169

Query: 506  LVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKATS 685
            ++    ++G FY D   + + ++    + E+GGDWER+NR K Y G++C+A RNFK+A  
Sbjct: 170  VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAK 229

Query: 686  LFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVI---GKVPHL 856
            L +DS++TFT+ EL  Y++   Y  +T + +L+R  LK KV+D+PE+L++I     +  +
Sbjct: 230  LLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSI 289

Query: 857  SEFLNSLYNCQYKSFFVAFSGLMEQIKLD-RYLQPHFRYYMREVRTVVYSQFLESYKSVT 1033
            S    SLY   Y S+F         + +  +YL  H  +++RE+R  VY+Q LESYK+++
Sbjct: 290  SSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLS 349

Query: 1034 MEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDF 1213
            +++MASAFGV+V F+D +L +FI   +L+C ID+V G++ETNRPD +NA Y   +KQGD 
Sbjct: 350  LKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDG 409

Query: 1214 LLNRIQKLSRVI 1249
            LL ++QK    +
Sbjct: 410  LLTKLQKYGAAV 421

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>Q6NRT5:CSN1_XENLA COP9 signalosome complex subunit 1 - Xenopus laevis (African clawed|
            frog)
          Length = 487

 Score = 98.6 bits (244), Expect = 6e-20
 Identities = 73/350 (20%), Positives = 152/350 (43%), Gaps = 12/350 (3%)
 Frame = +2

Query: 194  DIRSDVLSAVKSDDMAPLFESLAATGVLEP---DAALLAEMRARIDEEIRKLDEKIADAE 364
            DI   +  A +    AP        G +EP   D + +   R +   ++ KLD  + + +
Sbjct: 93   DIHRKLAEASREVQNAP---DAVPEGSMEPPALDTSWVEATRKKALLKLEKLDTDLKNYK 149

Query: 365  ENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYM 544
             N  +  +R  H     +++  G+   AL+          +    +++    +++ ++  
Sbjct: 150  GNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQ 209

Query: 545  DFDLISKSIDKAK---KLFEEGGDWERKN-----RLKVYEGLYCMATRNFKKATSLFLDS 700
            ++  +   + KA+   ++ E+ G+ + +      +LK   GL  +A R +K+A   FL +
Sbjct: 210  NWSHVLSYVSKAESTPEIAEQRGERDSQTQAVLTKLKCAAGLAELAARKYKQAAKCFLLA 269

Query: 701  ISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSL 877
                  + EL        Y  L ++ + DR  L++ V+ +      +   P + + +   
Sbjct: 270  SFDHCDFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKF 329

Query: 878  YNCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 1057
            Y  +Y S       + + + LD YL PH R    ++R     Q+   Y S  M  MA+AF
Sbjct: 330  YESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAF 389

Query: 1058 GVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 1207
              TV  ++ EL++ I  G ++ +ID  + +L     D+R+  ++ +++ G
Sbjct: 390  NTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMG 439

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>Q99LD4:CSN1_MOUSE COP9 signalosome complex subunit 1 - Mus musculus (Mouse)|
          Length = 471

 Score = 98.6 bits (244), Expect = 6e-20
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 11/349 (3%)
 Frame = +2

Query: 194  DIRSDVLSAVKSDDMAPLFESLAATGVLEP--DAALLAEMRARIDEEIRKLDEKIADAEE 367
            +I   +  A +    AP  +++  +GV  P  D A +   R +   ++ KLD  + + + 
Sbjct: 77   EIHRKLSEATRELQNAP--DAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKG 134

Query: 368  NLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMD 547
            N  +  +R  H     +++  G+   AL+          +    +++    +++ ++  +
Sbjct: 135  NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN 194

Query: 548  FDLISKSIDKAK---KLFEEGGDWERKN-----RLKVYEGLYCMATRNFKKATSLFLDSI 703
            +  +   + KA+   ++ E+ G+ + +      +LK   GL  +A R +K+A   FL + 
Sbjct: 195  WSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLAS 254

Query: 704  STFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLY 880
                 + EL        Y  L ++ + DR  L++ V+ +      +   P + + +   Y
Sbjct: 255  FDHCDFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFY 314

Query: 881  NCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 1060
              +Y S       + + + LD YL PH R    ++R     Q+   Y S  M  MA+AF 
Sbjct: 315  ESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFN 374

Query: 1061 VTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 1207
             TV  ++ EL++ I  G ++ +ID  + +L     D+R+  ++ ++  G
Sbjct: 375  TTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423

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>P97834:CSN1_RAT COP9 signalosome complex subunit 1 - Rattus norvegicus (Rat)|
          Length = 471

 Score = 98.2 bits (243), Expect = 8e-20
 Identities = 73/349 (20%), Positives = 154/349 (44%), Gaps = 11/349 (3%)
 Frame = +2

Query: 194  DIRSDVLSAVKSDDMAPLFESLAATGVLEP--DAALLAEMRARIDEEIRKLDEKIADAEE 367
            +I   +  A +    AP  +++  +GV  P  D A +   R +   ++ KLD  + + + 
Sbjct: 77   EIHRKLSEATRELQNAP--DAIPESGVEPPPLDTAWVEATRKKALLKLEKLDTDLKNYKG 134

Query: 368  NLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMD 547
            N  +  +R  H     +++  G+   AL+          +    +++    +++ ++  +
Sbjct: 135  NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN 194

Query: 548  FDLISKSIDKAK---KLFEEGGDWERKN-----RLKVYEGLYCMATRNFKKATSLFLDSI 703
            +  +   + KA+   ++ E+ G+ + +      +LK   GL  +A R +K+A   FL + 
Sbjct: 195  WSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCFLLAS 254

Query: 704  STFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLY 880
                 + EL        Y  L ++ + DR  L++ V+ +      +   P + + +   Y
Sbjct: 255  FDHCDFPELLSPSNVAVYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFY 314

Query: 881  NCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 1060
              +Y S       + + + LD YL PH R    ++R     Q+   Y S  M  MA+AF 
Sbjct: 315  ESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFN 374

Query: 1061 VTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 1207
             TV  ++ EL++ I  G ++ +ID  + +L     D+R+  ++ ++  G
Sbjct: 375  TTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423

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>Q13098:CSN1_HUMAN COP9 signalosome complex subunit 1 - Homo sapiens (Human)|
          Length = 471

 Score = 97.4 bits (241), Expect = 1e-19
 Identities = 73/349 (20%), Positives = 152/349 (43%), Gaps = 11/349 (3%)
 Frame = +2

Query: 194  DIRSDVLSAVKSDDMAPLFESLAATGVLEP--DAALLAEMRARIDEEIRKLDEKIADAEE 367
            +I   +  A +    AP  +++  +GV  P  D A +   R +   ++ KLD  + + + 
Sbjct: 77   EIHRKLSEATRELQNAP--DAIPESGVEPPALDTAWVEATRKKALLKLEKLDTDLKNYKG 134

Query: 368  NLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMD 547
            N  +  +R  H     +++  G+   AL+          +    +++    +++ ++  +
Sbjct: 135  NSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN 194

Query: 548  FDLISKSIDKAK---KLFEEGGDWERKN-----RLKVYEGLYCMATRNFKKATS-LFLDS 700
            +  +   + KA+   ++ E+ G+ + +      +LK   GL  +A R +K+A   L L S
Sbjct: 195  WSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLAS 254

Query: 701  ISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSEFLNSLY 880
                   EL        Y  L ++ + DR  L++ V+ +      +   P + + +   Y
Sbjct: 255  FDHCDFPELLSPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFY 314

Query: 881  NCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFG 1060
              +Y S       + + + LD YL PH R    ++R     Q+   Y S  M  MA+AF 
Sbjct: 315  ESKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFN 374

Query: 1061 VTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 1207
             TV  ++ EL++ I  G +  ++D  + +L     D+R+  ++ ++  G
Sbjct: 375  TTVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMG 423

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>Q9VVU5:CSN1_DROME COP9 signalosome complex subunit 1b - Drosophila melanogaster (Fruit|
            fly)
          Length = 525

 Score = 86.7 bits (213), Expect = 2e-16
 Identities = 63/314 (20%), Positives = 133/314 (42%), Gaps = 6/314 (1%)
 Frame = +2

Query: 284  DAALLAEMRARIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLK 463
            DAA +     +   ++ KLD  + + + N  +  +R  H   + +++  G+   AL+   
Sbjct: 159  DAAWVDTKMKKAALKLEKLDSDLKNYKSNSIKESIRRGHDDLADHYLSCGDLTNALKCYS 218

Query: 464  VTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKL--FEEGG---DWERKNRL 628
                   +    +++    +++ ++  ++  +   I KA+    F EG    + +   RL
Sbjct: 219  RARDYCTSGKHVVNMCLNVIKVSIYLQNWAHVMSYISKAESTPDFAEGSKEANAQVHTRL 278

Query: 629  KVYEGLYCMATRNFKKATSLFLDSISTFTTY-ELFPYDTFIFYTVLTSIISLDRVSLKQK 805
            +   GL  +  + +K A   FL++      + E+        Y  L ++ + DR  LK+ 
Sbjct: 279  ECAAGLAELQQKKYKVAAKHFLNANFDHCDFPEMISTSNVAVYGGLCALATFDRQELKRL 338

Query: 806  VVDAPEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREV 985
            V+ +      +   P L + +   Y  +Y S       + + + +D Y+ PH      ++
Sbjct: 339  VIASTSFKLFLELEPQLRDIIFKFYESKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKI 398

Query: 986  RTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRP 1165
            R     Q+   Y S  M  MA AF  +V  ++ E+ + I  G++  +ID    +L     
Sbjct: 399  RNRALIQYFSPYMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEA 458

Query: 1166 DERNAFYQSTIKQG 1207
            D+RN+ ++  +  G
Sbjct: 459  DQRNSTFERALIMG 472

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>P45432:CSN1_ARATH COP9 signalosome complex subunit 1 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 441

 Score = 84.7 bits (208), Expect = 9e-16
 Identities = 69/312 (22%), Positives = 130/312 (41%), Gaps = 3/312 (0%)
 Frame = +2

Query: 284  DAALLAEMRARIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLK 463
            D A    +  R +++  KL+ +++    NL +  +R  +     ++   G    A +   
Sbjct: 104  DLAWCEAVDRRAEQKKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYI 163

Query: 464  VTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEG 643
             T          + +    + + +    F  ++  ++KA++  E         +L+   G
Sbjct: 164  RTRDYCTTTKHIIHMCMNAILVSIEMGQFTHVTSYVNKAEQNPETLEPMVNA-KLRCASG 222

Query: 644  LYCMATRNFKKATSLFLD---SISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVD 814
            L  +  + +K A   FLD    +       + P D    Y  L ++ S DR  LKQKV+D
Sbjct: 223  LAHLELKKYKLAARKFLDVNPELGNSYNEVIAPQD-IATYGGLCALASFDRSELKQKVID 281

Query: 815  APEILAVIGKVPHLSEFLNSLYNCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTV 994
                   +  VP + E +N  Y+ +Y S     + L   + LD +L  H      ++R  
Sbjct: 282  NINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKK 341

Query: 995  VYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDER 1174
               Q+   + SV +  MA AF  +V  +++EL   I   ++  +ID    +L     D+R
Sbjct: 342  ALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQR 401

Query: 1175 NAFYQSTIKQGD 1210
            NA +Q  ++ G+
Sbjct: 402  NATFQKVLQMGN 413

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>O94308:CSN1_SCHPO COP9 signalosome complex subunit 1 - Schizosaccharomyces pombe|
            (Fission yeast)
          Length = 422

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 57/272 (20%), Positives = 106/272 (38%)
 Frame = +2

Query: 323  EEIRKLDEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKM 502
            + + +L  ++   + NL    +R A L  + +F  VG+ + AL             GQ  
Sbjct: 90   QNLEQLRRELKAYKNNLIRESIRAAQLDLASFFADVGQFDSALRSYAKVREYCTNAGQIA 149

Query: 503  DLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMATRNFKKAT 682
             L    ++I ++  ++  +     +AK         E  + +  Y GL      ++++A 
Sbjct: 150  HLSLELMRISIWIGNYSHVLAFGSRAKSTVSAA--MELTSPIYAYCGLANFCLGDYEEAL 207

Query: 683  SLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILAVIGKVPHLSE 862
            + FL  + T T+  +        Y  L ++   D   L Q++    E  A+    P L  
Sbjct: 208  AHFL-KVETDTSDGIITKTDISVYISLCALACWDHKRLIQELERNEEFNALSDLDPSLRR 266

Query: 863  FLNSLYNCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEA 1042
             L +  N +Y           +   LD YL P        +R      +L  Y ++    
Sbjct: 267  CLQAKCNRKYSLLLDTLQQNAQDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSK 326

Query: 1043 MASAFGVTVDFIDQELSRFIAAGKLHCKIDKV 1138
            +A  F +  +FI++ L   I A KL+ K+D +
Sbjct: 327  IAVDFHIDENFIEKNLLEIIEAKKLNGKVDSL 358

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>Q94899:CSN2_DROME COP9 signalosome complex subunit 2 - Drosophila melanogaster (Fruit|
            fly)
          Length = 444

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 5/195 (2%)
 Frame = +2

Query: 668  FKKATSLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSL-----KQKVVDAPEILA 832
            F+KA + F ++   +         T + Y VL +++    ++       +   + PEILA
Sbjct: 252  FEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILA 311

Query: 833  VIGKVPHLSEFLNSLYNCQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFL 1012
                   ++  +NS  N     F          I  D++++ H    +R +RT V  + +
Sbjct: 312  -------MTNLVNSYQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLI 364

Query: 1013 ESYKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQS 1192
              YK++ +  +A+A  +    ++  L   I    +  +ID+V  VL+ ++ +   + Y +
Sbjct: 365  RPYKNIAIPFIANALNIEPAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNA 424

Query: 1193 TIKQGDFLLNRIQKL 1237
              K      N+IQ L
Sbjct: 425  LEKWS----NQIQSL 435

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>Q9D8W5:PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 - Mus musculus|
            (Mouse)
          Length = 456

 Score = 40.4 bits (93), Expect = 0.020
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +2

Query: 1019 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 1198
            Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AGV+   RP + N       
Sbjct: 370  YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 429

Query: 1199 KQGDFLLNRIQKLSRVI 1249
            ++ + L++ + K + +I
Sbjct: 430  QKLNSLMSLVNKTTHLI 446

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>Q5RBI3:PSD12_PONPY 26S proteasome non-ATPase regulatory subunit 12 - Pongo pygmaeus|
            (Orangutan)
          Length = 456

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +2

Query: 1019 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 1198
            Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP + N       
Sbjct: 370  YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429

Query: 1199 KQGDFLLNRIQKLSRVI 1249
            ++ + L++ + K + +I
Sbjct: 430  QKLNSLMSLVNKTTHLI 446

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>O00232:PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 - Homo sapiens|
            (Human)
          Length = 456

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +2

Query: 1019 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 1198
            Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP + N       
Sbjct: 370  YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429

Query: 1199 KQGDFLLNRIQKLSRVI 1249
            ++ + L++ + K + +I
Sbjct: 430  QKLNSLMSLVNKTTHLI 446

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>Q2KJ25:PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 - Bos taurus (Bovine)|
          Length = 456

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 19/77 (24%), Positives = 40/77 (51%)
 Frame = +2

Query: 1019 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 1198
            Y  +TM+ MA    ++VD  +  LS  +    +  K+D++AG++   RP + N       
Sbjct: 370  YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 429

Query: 1199 KQGDFLLNRIQKLSRVI 1249
            ++ + L++ + K + +I
Sbjct: 430  QKLNSLMSLVNKTTHLI 446

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>Q7Z406:MYH14_HUMAN Myosin-14 - Homo sapiens (Human)|
          Length = 1995

 Score = 40.0 bits (92), Expect = 0.026
 Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 17/138 (12%)
 Frame = +2

Query: 251  ESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEENLGESEVR--EAHLAKSLYFV 424
            +S    G L+   A L E RAR+ E++R   E  A+AEE  G    R  E  L  S    
Sbjct: 887  QSAREVGELQGRVAQLEEERARLAEQLRAEAELCAEAEETRGRLAARKQELELVVSELEA 946

Query: 425  KVGEKEKALEQLKVTEGKTV---------------AIGQKMDLVFYTLQIGLFYMDFDLI 559
            +VGE+E+   Q++ TE K +                  QK+ L   T +  +   + DL+
Sbjct: 947  RVGEEEECSRQMQ-TEKKRLQQHIQELEAHLEAEEGARQKLQLEKVTTEAKMKKFEEDLL 1005

Query: 560  SKSIDKAKKLFEEGGDWE 613
                D+  KL + G  W+
Sbjct: 1006 LLE-DQNSKLSKSGSCWK 1022

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>Q5JHN1:RAD50_PYRKO DNA double-strand break repair rad50 ATPase - Pyrococcus|
           kodakaraensis (Thermococcus kodakaraensis)
          Length = 883

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
 Frame = +2

Query: 173 VDDLSKVDIRSDVLSAVKSD---DMAPLFESLAATGVLEPDAALLAEMRARI---DEEIR 334
           +D+LSK + R   L   K     ++  L E L A    +   A L  ++ R+   +EEI 
Sbjct: 330 IDELSKKEARVKELLKEKEGLQKELGALEEDLKAYQRAKELMANLERLKKRLTLSEEEIE 389

Query: 335 KLDEKIADAEENLGE--SEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKM 502
           KL+ +I  A E   E   E+ E    +       GE+ KAL +LK  +G+    G+++
Sbjct: 390 KLEAEIQKARERKEEIMKELEEIGSRRGELKSIAGERNKALMELKKAKGRCPVCGREL 447

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>P58301:RAD50_PYRFU DNA double-strand break repair rad50 ATPase - Pyrococcus furiosus|
          Length = 882

 Score = 37.0 bits (84), Expect = 0.22
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
 Frame = +2

Query: 251 ESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEEN-----LGESEVREAHLAKSL 415
           E L    +LE D  L  E++A+  E +R+L EK+ D         L E E ++  + +  
Sbjct: 355 EILNKLAILEKDHQLYEEIKAK-KENLRQLKEKLGDKSPEDIKKLLEELETKKTTIEEER 413

Query: 416 YFV---------KVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKS 568
             +         K+G+ + A+E+LK  +GK    G+++        +  +++D   ++ S
Sbjct: 414 NEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLD---LNNS 470

Query: 569 IDKAKKLFEEGGDWERKNR 625
            +   KL +   + ER+ R
Sbjct: 471 KNTLAKLIDRKSELERELR 489

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>P35594:CLPE_STRPN ATP-dependent Clp protease ATP-binding subunit clpE - Streptococcus|
           pneumoniae
          Length = 752

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +2

Query: 281 PDAA--LLAEMRARIDEEIRKLDEKIADAE----ENLGESEVREAHLAKSLYFVKVGEKE 442
           PD A  LL E  ++++  +  +D K+ D      ENL     RE    K+ YF     K 
Sbjct: 338 PDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKSQATREEDFEKAAYFRDQIAKY 397

Query: 443 KALEQLKVTEGKTVAIGQK 499
           K +++ K+T+  T +I +K
Sbjct: 398 KEMQKKKITDQDTPSISEK 416

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>Q7TT49:MRCKB_RAT Serine/threonine-protein kinase MRCK beta - Rattus norvegicus (Rat)|
          Length = 1713

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
 Frame = +2

Query: 215  SAVKSDDMAPLF-----ESLAATGVLEPDAALLAEMRAR--IDEEIRKLDEKIADAEENL 373
            S++ S  + PL+     + L  +  LE  +AL AE+RA+  + EE+RK+ +     E  L
Sbjct: 852  SSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQLVHEELRKVKDTSLAFESKL 911

Query: 374  GESEVREAHLAKSLYFVKVGEKEK 445
             ESE +   L + +  +K   +EK
Sbjct: 912  KESEAKNRELLEEMQSLKKRMEEK 935

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>Q10251:IF2P_SCHPO Eukaryotic translation initiation factor 5B - Schizosaccharomyces|
           pombe (Fission yeast)
          Length = 1079

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
 Frame = +2

Query: 176 DDLSKVDIRSDV-LSAVKSDDMAPLFESLAATGVLEPDAA----LLAEMRARIDEEIRKL 340
           D L+  ++ S+V +S    +D +   +  A +    P+      +L E RAR +EE R  
Sbjct: 209 DTLASSEVSSEVDISTPAENDSSAKGKQAAGSKRKGPNVTALQKMLEEKRAREEEEQRIR 268

Query: 341 DEKIADAEENLGESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQK 499
           +E+   AEE    +EV EA   K    +K  EKE+  ++    +GK ++  QK
Sbjct: 269 EEEARIAEEEKRLAEVEEAR--KEEARLKKKEKERKKKEEMKAQGKYLSKKQK 319

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>Q7TT50:MRCKB_MOUSE Serine/threonine-protein kinase MRCK beta - Mus musculus (Mouse)|
          Length = 1713

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
 Frame = +2

Query: 215  SAVKSDDMAPLF-----ESLAATGVLEPDAALLAEMRAR--IDEEIRKLDEKIADAEENL 373
            S++ S  + PL+     + L  +  LE  +AL AE+RA+  + EE+RK+ +     E  L
Sbjct: 852  SSLGSRTLDPLWKVRRSQKLDMSARLELQSALEAEIRAKQLVQEELRKVKDSSLAFESKL 911

Query: 374  GESEVREAHLAKSLYFVKVGEKEK 445
             ESE +   L + +  ++   +EK
Sbjct: 912  KESEAKNRELLEEMQSLRKRMEEK 935

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>Q9YFZ1:RAD50_AERPE DNA double-strand break repair rad50 ATPase - Aeropyrum pernix|
          Length = 919

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
 Frame = +2

Query: 245  LFESLAATGVLEPDAALLAEMRARID----EEIRKLDEKIADAEENLGESEV--REAHLA 406
            L E L   G   P+    AE + R+     EE+RKL+  + +   NL   EV  REA   
Sbjct: 528  LEEGLRELGFQTPEDLAKAEQKLRMLRERLEELRKLENSLEEKVRNLSREEVALREAKTR 587

Query: 407  KSLYFVKVGEKE--------------KALEQLKVTEGKTVAIG------QKMDLVFYTLQ 526
                  ++G KE              K LE++ V++ + +A        + +D +    +
Sbjct: 588  ALEVLQRLGIKEEEAREKLKTLSSESKKLERMLVSKAEDLATRLGITAYRSLDDLLEKAR 647

Query: 527  IGLFYMDFDL--ISKSIDKAKKLFEEGG--DWERKNRLKVYEGL 646
              L  +D +L  I + +++A++L EE     WE +  +K  E L
Sbjct: 648  EALEGVDKELSAIERRLEEARRLKEEAAKLKWEAEQVMKRLEEL 691

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>Q9H1U4:MEGF9_HUMAN Multiple epidermal growth factor-like domains 9 precursor - Homo|
            sapiens (Human)
          Length = 602

 Score = 33.1 bits (74), Expect = 3.1
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = +1

Query: 943  PLSSTSFPLLHEGSAHCRLLTVFGVIQECDDGSYGF----CIWCDC 1068
            P  + S P    G   C++  +  +   C DG YGF    C+ C C
Sbjct: 258  PHGALSIPCNSSGKCQCKVGVIGSICDRCQDGYYGFSKNGCLPCQC 303

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>P34551:SRX10_CAEEL Serpentine receptor class XA 10 - Caenorhabditis elegans|
          Length = 319

 Score = 28.5 bits (62), Expect(2) = 3.7
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -3

Query: 513 NTRSIFWPMATVFPSVTLSCSSAFSFSPTFTKYKDLARWASRT 385
           N  S+F+P    F +V +  +     SPT+TK K++ R   +T
Sbjct: 177 NYYSVFFPFVAFFFNVLVIINFKLQRSPTYTKIKNMFRPKKKT 219



 Score = 23.1 bits (48), Expect(2) = 3.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 406 GKMGFTHFTLAQV 368
           GK+ FT+F LAQV
Sbjct: 258 GKLAFTYFRLAQV 270

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>P63389:YHES_ECOLI Uncharacterized ABC transporter ATP-binding protein yheS -|
           Escherichia coli
          Length = 637

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
 Frame = +2

Query: 311 ARIDEEIRKLDEKIADAEENLGESEV----REAHLAKSL 415
           AR+++E+ KL+ ++A AEE LG+SE+    R+A L   L
Sbjct: 565 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACL 603

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>P63390:YHES_ECO57 Uncharacterized ABC transporter ATP-binding protein yheS -|
           Escherichia coli O157:H7
          Length = 637

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 4/39 (10%)
 Frame = +2

Query: 311 ARIDEEIRKLDEKIADAEENLGESEV----REAHLAKSL 415
           AR+++E+ KL+ ++A AEE LG+SE+    R+A L   L
Sbjct: 565 ARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACL 603

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>Q0VDN7:RUND1_MOUSE RUN domain-containing protein 1 - Mus musculus (Mouse)|
          Length = 615

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
 Frame = +2

Query: 281 PDAALLAEMRARIDEEIRKLDEKIADAEENLGESEVR---EAHLAKSLYFVKVGEKEKAL 451
           P + +L   R  IDE I+KLD  + +   +L   E+R   +A +A+ +  V+V  KE+ +
Sbjct: 213 PQSVVLERQRVIIDELIKKLDMNLNEDISSLSTEELRQRVDAAVAQIVNPVRV--KEQLV 270

Query: 452 EQLK 463
           EQLK
Sbjct: 271 EQLK 274

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>Q6FR93:ATG20_CANGA Autophagy-related protein 20 - Candida glabrata (Yeast) (Torulopsis|
           glabrata)
          Length = 753

 Score = 32.7 bits (73), Expect = 4.1
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +2

Query: 170 DVDDLSKVDIRSDVLSAVKSDDMAPLFESLAATGVLEPDAALLAEMR-----ARIDEEIR 334
           D + +  VDI+  V S +   D+    E L  T +LE D       +      ++DE++ 
Sbjct: 144 DSEAIESVDIKGKVSSGISDADVLKPQEELVHTAILENDNPFYDANKEISGSKKLDEKVN 203

Query: 335 KLDEKIADAEENLGESEVREAHL 403
            +D      + N G+S+ R   L
Sbjct: 204 SVDSMAETTKVNSGDSKQRMGDL 226

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>Q97GM6:MUTS2_CLOAB MutS2 protein - Clostridium acetobutylicum|
          Length = 788

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = +2

Query: 299 AEMRARIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFVKVGEK 439
           +E R R+ E  +KL EK+ +AEE+L  SE  +    KS   VK GE+
Sbjct: 601 SEARQRLQESRQKLKEKLNNAEESLNISERDQGEALKS---VKEGEE 644

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>P31794:ENV_MLVRK Envelope glycoprotein precursor - Radiation murine leukemia virus|
           (strain Kaplan)
          Length = 665

 Score = 32.3 bits (72), Expect = 5.3
 Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
 Frame = +2

Query: 263 ATGVLEPDAALLA--EMRARIDEEIRKLDEKIADAEENLGE-SEVREAHLAKSLYFVKVG 433
           A GV     AL+A  +++A + ++++++++ I + E++L   SEV             V 
Sbjct: 487 AAGVGTGTTALVATQQLQAAVHDDLKEVEKSITNLEKSLTSLSEV-------------VL 533

Query: 434 EKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDW 610
           +  + L+ L + EG   A   K +  FY    G+       + + +++ +KLFE G  W
Sbjct: 534 QNRRGLDLLFLKEGGLCA-ALKEECCFYADHTGVVRDSMAKLRERLNQRQKLFESGQGW 591

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>P11268:ENV_MLVRD Envelope glycoprotein precursor - Radiation murine leukemia virus|
          Length = 665

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
 Frame = +2

Query: 263 ATGVLEPDAALLA--EMRARIDEEIRKLDEKIADAEENLGE-SEVREAHLAKSLYFVKVG 433
           A G+     AL+A  +++A + ++++++++ I + E++L   SEV             V 
Sbjct: 487 AAGIGTGTTALVATQQLQAAVHDDLKEVEKSITNLEKSLTSLSEV-------------VL 533

Query: 434 EKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGDW 610
           +  + L+ L + EG   A   K +  FY    G+       + + +++ +KLFE G  W
Sbjct: 534 QNRRGLDLLFLKEGGLCA-ALKEECCFYADHTGVVRDSMAKLRERLNQRQKLFESGQGW 591

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>P03385:ENV_MLVMO Envelope glycoprotein precursor - Moloney murine leukemia virus|
           (MoMLV)
          Length = 665

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
 Frame = +2

Query: 263 ATGVLEPDAALLA-----EMRARIDEEIRKLDEKIADAEENLGE-SEVREAHLAKSLYFV 424
           A G+     AL+A     +++A + +++R++++ I++ E++L   SEV            
Sbjct: 489 AAGIGTGTTALMATQQFQQLQAAVQDDLREVEKSISNLEKSLTSLSEV------------ 536

Query: 425 KVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGG 604
            V +  + L+ L + EG   A   K +  FY    GL       + + +++ +KLFE   
Sbjct: 537 -VLQNRRGLDLLFLKEGGLCA-ALKEECCFYADHTGLVRDSMAKLRERLNQRQKLFESTQ 594

Query: 605 DWERKNRLKVYEGLY 649
            W        +EGL+
Sbjct: 595 GW--------FEGLF 601

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>P15073:ENV_MCFF Envelope glycoprotein precursor - Mink cell focus-forming murine|
           leukemia virus
          Length = 636

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
 Frame = +2

Query: 263 ATGVLEPDAALLA-----EMRARIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFVK 427
           A GV     AL+A     +++A +  +++++++ I + E++L  + + E  L        
Sbjct: 460 AAGVGTGTTALVATQQFQQLQAAVHNDLKEVEKSITNLEKSL--TSLSEVAL-------- 509

Query: 428 VGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGGD 607
             +  + L+ L + EG   A   K +  FY    GL       + + +++ +KLFE G  
Sbjct: 510 --QNRRGLDLLFLKEGGLCA-ALKEECCFYADHTGLVRDSMAKLRERLNQRQKLFESGQG 566

Query: 608 WERKNRLKVYEGLY 649
           W        +EGL+
Sbjct: 567 W--------FEGLF 572

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>P08447:ATPF_SYNP6 ATP synthase B chain - Synechococcus sp. (strain ATCC 27144 / PCC|
           6301 / SAUG 1402/1) (Anacystis nidulans)
          Length = 171

 Score = 32.0 bits (71), Expect = 6.9
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
 Frame = +2

Query: 293 LLAEMRARIDEEIRKLDEKIADAEENLGESEVR----EAHLAKSLYFVK---------VG 433
           LL+  RA I+ EIR+++EK+A + + L +++ +    EA  A+ L   K         + 
Sbjct: 47  LLSNRRAAIEAEIREVEEKLASSAQALSQAQTQLKEAEAEAARLLVEAKARAAAVRQEIL 106

Query: 434 EKEKA-LEQLKVTEGKTVAIGQK 499
           +K  A +E+LK T  + V+  Q+
Sbjct: 107 DKAAADVERLKATAAQDVSTEQQ 129

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>Q5FWH2:UNKL_MOUSE RING finger protein unkempt-like - Mus musculus (Mouse)|
          Length = 231

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
 Frame = +2

Query: 206 DVLSAVKSDDMAPLFES-LAATGVLEPDAALLAEMRARIDEEIRKLD--EKIADAEENLG 376
           D +S   S   +P+  S  +A+    P++A LA +R ++DE  RK+   E+     +   
Sbjct: 38  DFVSGSFSPSPSPILNSGPSASSSASPNSAELARVRRQLDEAKRKIRQWEESWQQVKQAC 97

Query: 377 ESEVREAHLAKSLYFVKVGEKEKALEQLKVTEGKTVAIGQKMD 505
           ++  REA  AK    V   +++ AL++ +  E K   + ++++
Sbjct: 98  DAWQREAQEAKERARVADSDRQLALQRKEEVEAKVKQLQEELE 140

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>Q6P9I7:SMC6_XENLA Structural maintenance of chromosomes protein 6 - Xenopus laevis|
           (African clawed frog)
          Length = 1128

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 17/115 (14%)
 Frame = +2

Query: 212 LSAVKSDDMAPLFESLAATGVLEPDAALLAEMRARIDEEIRKLDEKIADAEE-------- 367
           L +    D    F        ++ D + + E ++R  +++    E++ D  +        
Sbjct: 237 LQSKNESDKYKFFMKATQLEQMKEDYSYIMETKSRTHDQVENGGERLRDLRQECIQKEER 296

Query: 368 -----NLGESEVREAHLAKSLYFVKVGEKEKAL----EQLKVTEGKTVAIGQKMD 505
                +LGE + +   L   + +  V E EK +    EQ+   EG+TV   QK++
Sbjct: 297 FKSIASLGEMKEKLEDLKNKMAWALVTESEKQIKPFIEQISTEEGRTVKYEQKIE 351

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>Q96C34:RUND1_HUMAN RUN domain-containing protein 1 - Homo sapiens (Human)|
          Length = 613

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 281 PDAALLAEMRARIDEEIRKLDEKIADAEENLGESEVREAHLAKSLYFVKVGE-KEKALEQ 457
           P + +L   R  IDE I+KLD  + +   +L   E+R+   A     V     KE+ +EQ
Sbjct: 210 PQSVVLERQRVIIDELIKKLDMNLNEDISSLSTEELRQRVDAAVAQIVNPARVKEQLVEQ 269

Query: 458 LK 463
           LK
Sbjct: 270 LK 271

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>Q313Q5:MURD_DESDG UDP-N-acetylmuramoylalanine--D-glutamate ligase - Desulfovibrio|
            desulfuricans (strain G20)
          Length = 447

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +2

Query: 923  MEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAM---ASAFGVTVDFIDQELS 1093
            ME++  DRY     R +   VR    +  L S+    +EA      AFGVT     Q + 
Sbjct: 241  MEELA-DRYALAARREFFDAVRRFPRTALLGSHNMANIEAAWLACRAFGVTQSQAAQAVE 299

Query: 1094 RFIAAGKLHCKIDKVAGVLETN 1159
             F        K+D+VAGVL  N
Sbjct: 300  EFAPLEHRLEKVDEVAGVLFVN 321

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>P08360:ENV_MLVCB Envelope glycoprotein precursor - Cas-Br-E murine leukemia virus|
          Length = 661

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
 Frame = +2

Query: 263 ATGVLEPDAALLA-----EMRARIDEEIRKLDEKIADAEENLGE-SEVREAHLAKSLYFV 424
           A GV     AL+A     +++A +  +++++++ I + E++L   SEV            
Sbjct: 485 AAGVGTGTTALVATQQFQQLQAAMHNDLKEVEKSITNLEKSLTSLSEV------------ 532

Query: 425 KVGEKEKALEQLKVTEGKTVAIGQKMDLVFYTLQIGLFYMDFDLISKSIDKAKKLFEEGG 604
            V +  + L+ L + EG   A   K +  FY    GL       + + +++ +KLFE G 
Sbjct: 533 -VLQNRRGLDLLFLKEGGLCA-ALKEECCFYADHTGLVRDSMAKLRERLNQRQKLFESGQ 590

Query: 605 DWERKNRLKVYEGLY 649
            W        +EGL+
Sbjct: 591 GW--------FEGLF 597

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>Q8Y7G1:DPO3_LISMO DNA polymerase III polC-type - Listeria monocytogenes|
          Length = 1444

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 845  VPHLSEFLNSLYNCQYKSFFV--AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLES 1018
            V H + F     N  Y+   +  A + +++ ++L R+L PHF+ +     T  ++  LE 
Sbjct: 510  VAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQ 569

Query: 1019 YKSVTMEAMASAF 1057
            +     +A A+A+
Sbjct: 570  HHRAVFDAEATAY 582

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>Q720A2:DPO3_LISMF DNA polymerase III polC-type - Listeria monocytogenes serotype 4b|
            (strain F2365)
          Length = 1444

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 845  VPHLSEFLNSLYNCQYKSFFV--AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLES 1018
            V H + F     N  Y+   +  A + +++ ++L R+L PHF+ +     T  ++  LE 
Sbjct: 510  VAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQ 569

Query: 1019 YKSVTMEAMASAF 1057
            +     +A A+A+
Sbjct: 570  HHRAVFDAEATAY 582

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>Q92C34:DPO3_LISIN DNA polymerase III polC-type - Listeria innocua|
          Length = 1444

 Score = 31.6 bits (70), Expect = 9.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 845  VPHLSEFLNSLYNCQYKSFFV--AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLES 1018
            V H + F     N  Y+   +  A + +++ ++L R+L PHF+ +     T  ++  LE 
Sbjct: 510  VAHNASFDMGFINTAYEKVGLEKAKNAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQ 569

Query: 1019 YKSVTMEAMASAF 1057
            +     +A A+A+
Sbjct: 570  HHRAVFDAEATAY 582


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 242,185,311
Number of extensions: 5200190
Number of successful extensions: 16031
Number of sequences better than 10.0: 49
Number of HSP's gapped: 16004
Number of HSP's successfully gapped: 50
Length of query: 497
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 380
Effective length of database: 68,593,924
Effective search space: 26065691120
Effective search space used: 26065691120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result