ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf65k12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001053059.1| Oryza sativa (japonica cultivar-group) Os02g... 94 1e-15
2emb|AJ495789.1|OSA495789 Oryza sativa (japonica cultivar-group) ... 94 1e-15
3dbj|AK120913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 1e-15
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 2e-14
5dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic D... 90 2e-14
6ref|NM_001036793.1| Arabidopsis thaliana MYB3R-4; DNA binding / ... 44 1.2
7ref|NM_121189.2| Arabidopsis thaliana MYB3R-4; DNA binding / tra... 44 1.2
8gb|AY519650.1| Arabidopsis thaliana MYB transcription factor (At... 44 1.2
9gb|AF371975.2|AF371975 Arabidopsis thaliana putative c-myb-like ... 44 1.2
10emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, B... 44 1.2
11gb|AC193780.1| Solanum lycopersicum chromosome 10 clone C10HBa01... 42 4.8
12ref|NM_001053366.1| Oryza sativa (japonica cultivar-group) Os02g... 42 4.8
13gb|AC186548.3| Gallus gallus BAC clone TAM33-7F21 from chromosom... 42 4.8
14emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromo... 42 4.8
15gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome... 42 4.8
16gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, com... 42 4.8
17gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence 42 4.8
18dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
19dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
20dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
21gb|AC126172.8| Homo sapiens 12 BAC RP11-654C3 (Roswell Park Canc... 42 4.8
22dbj|AP004852.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
23dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic D... 42 4.8
24dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 4.8
25gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromoso... 42 4.8
26gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complet... 42 4.8
27emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chr... 42 4.8
28emb|AL672033.12| Mouse DNA sequence from clone RP23-436F2 on chr... 42 4.8 
>ref|NM_001053059.1| Oryza sativa (japonica cultivar-group) Os02g0271900 (Os02g0271900)
           mRNA, complete cds
          Length = 1964
 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 348 gggaggacgaatggtgcaatcaaagaatattggagaggtcctatgaaaagaaaattaaat 407
           |||||||| | || ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 508 gggaggacaagtgctgcaatcaaagaacactggagaggtcctatgaaaagaaaattaaat 567

                                  
Query: 408 tcatatttatcgtcaggtttgct 430
           || |||||| | ||||| |||||
Sbjct: 568 tcgtatttagcttcaggattgct 590



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 93/114 (81%)
 Strand = Plus / Plus

                                                                       
Query: 137 tcaaatgatcaacaaacatgggctgaaaaactggcaaactgtcgcacatgctatacctgg 196
           ||||||||| |||| | ||||||  || |||||| ||||||| ||||  |||||||||||
Sbjct: 297 tcaaatgattaacatatatgggcataacaactgggaaactgttgcacgcgctatacctgg 356

                                                                 
Query: 197 ccgaagtgcaccacaatgccgacaaaggtggagatacaaaatagactctgcaat 250
            |||| ||||| ||||||| ||  |||||||| || |||  ||||| |||||||
Sbjct: 357 tcgaaatgcacaacaatgcagagtaaggtggaaattcaatctagaccctgcaat 410
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>emb|AJ495789.1|OSA495789 Oryza sativa (japonica cultivar-group) partial mRNA for MYB20
           protein
          Length = 1600

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 348 gggaggacgaatggtgcaatcaaagaatattggagaggtcctatgaaaagaaaattaaat 407
           |||||||| | || ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 228 gggaggacaagtgctgcaatcaaagaacactggagaggtcctatgaaaagaaaattaaat 287

                                  
Query: 408 tcatatttatcgtcaggtttgct 430
           || |||||| | ||||| |||||
Sbjct: 288 tcgtatttagcttcaggattgct 310



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 93/114 (81%)
 Strand = Plus / Plus

                                                                       
Query: 137 tcaaatgatcaacaaacatgggctgaaaaactggcaaactgtcgcacatgctatacctgg 196
           ||||||||| |||| | ||||||  || |||||| ||||||| ||||  |||||||||||
Sbjct: 17  tcaaatgattaacatatatgggcataacaactgggaaactgttgcacgcgctatacctgg 76

                                                                 
Query: 197 ccgaagtgcaccacaatgccgacaaaggtggagatacaaaatagactctgcaat 250
            |||| ||||| ||||||| ||  |||||||| || |||  ||||| |||||||
Sbjct: 77  tcgaaatgcacaacaatgcagagtaaggtggaaattcaatctagaccctgcaat 130
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>dbj|AK120913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034G08, full
           insert sequence
          Length = 1966

 Score = 93.7 bits (47), Expect = 1e-15
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                       
Query: 348 gggaggacgaatggtgcaatcaaagaatattggagaggtcctatgaaaagaaaattaaat 407
           |||||||| | || ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 510 gggaggacaagtgctgcaatcaaagaacactggagaggtcctatgaaaagaaaattaaat 569

                                  
Query: 408 tcatatttatcgtcaggtttgct 430
           || |||||| | ||||| |||||
Sbjct: 570 tcgtatttagcttcaggattgct 592



 Score = 60.0 bits (30), Expect = 2e-05
 Identities = 93/114 (81%)
 Strand = Plus / Plus

                                                                       
Query: 137 tcaaatgatcaacaaacatgggctgaaaaactggcaaactgtcgcacatgctatacctgg 196
           ||||||||| |||| | ||||||  || |||||| ||||||| ||||  |||||||||||
Sbjct: 299 tcaaatgattaacatatatgggcataacaactgggaaactgttgcacgcgctatacctgg 358

                                                                 
Query: 197 ccgaagtgcaccacaatgccgacaaaggtggagatacaaaatagactctgcaat 250
            |||| ||||| ||||||| ||  |||||||| || |||  ||||| |||||||
Sbjct: 359 tcgaaatgcacaacaatgcagagtaaggtggaaattcaatctagaccctgcaat 412
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 89.7 bits (45), Expect = 2e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                           
Query: 362     tgcaatcaaagaatattggagaggtcctatgaaaagaaaattaaattcatatttatcgtc 421
               ||||||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||
Sbjct: 9850039 tgcaatcaaagaacactggagaggtcctatgaaaagaaaattaaattcgtatttagcttc 9850098

                        
Query: 422     aggtttgct 430
               ||| |||||
Sbjct: 9850099 aggattgct 9850107



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 137     tcaaatgatcaacaaacatgggctgaaaaactggcaaactgtcgcacatgctatacctgg 196
               ||||||||| |||| | ||||||  || |||||| ||||||| ||||  |||||||||||
Sbjct: 9848933 tcaaatgattaacatatatgggcataacaactgggaaactgttgcacgcgctatacctgg 9848992

                                  
Query: 197     ccgaagtgcaccacaatgc 215
                |||| ||||| |||||||
Sbjct: 9848993 tcgaaatgcacaacaatgc 9849011



 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 217      gacaaaggtggagatacaaaa 237
                |||||||||||||||||||||
Sbjct: 16042249 gacaaaggtggagatacaaaa 16042229
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>dbj|AP005007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0521F09
          Length = 164823

 Score = 89.7 bits (45), Expect = 2e-14
 Identities = 63/69 (91%)
 Strand = Plus / Plus

                                                                         
Query: 362   tgcaatcaaagaatattggagaggtcctatgaaaagaaaattaaattcatatttatcgtc 421
             ||||||||||||| | |||||||||||||||||||||||||||||||| |||||| | ||
Sbjct: 31001 tgcaatcaaagaacactggagaggtcctatgaaaagaaaattaaattcgtatttagcttc 31060

                      
Query: 422   aggtttgct 430
             ||| |||||
Sbjct: 31061 aggattgct 31069



 Score = 54.0 bits (27), Expect = 0.001
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 137   tcaaatgatcaacaaacatgggctgaaaaactggcaaactgtcgcacatgctatacctgg 196
             ||||||||| |||| | ||||||  || |||||| ||||||| ||||  |||||||||||
Sbjct: 29895 tcaaatgattaacatatatgggcataacaactgggaaactgttgcacgcgctatacctgg 29954

                                
Query: 197   ccgaagtgcaccacaatgc 215
              |||| ||||| |||||||
Sbjct: 29955 tcgaaatgcacaacaatgc 29973
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>ref|NM_001036793.1| Arabidopsis thaliana MYB3R-4; DNA binding / transcription factor
           (MYB3R-4) mRNA, complete cds
          Length = 2397

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 288 ctgattcgtgctcatcaaatctatgg 313
           |||||||||||||||||||| |||||
Sbjct: 430 ctgattcgtgctcatcaaatatatgg 455
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>ref|NM_121189.2| Arabidopsis thaliana MYB3R-4; DNA binding / transcription factor
           (MYB3R-4) mRNA, complete cds
          Length = 3403

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 288 ctgattcgtgctcatcaaatctatgg 313
           |||||||||||||||||||| |||||
Sbjct: 757 ctgattcgtgctcatcaaatatatgg 782
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>gb|AY519650.1| Arabidopsis thaliana MYB transcription factor (At5g11510) mRNA,
           complete cds
          Length = 2886

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 288 ctgattcgtgctcatcaaatctatgg 313
           |||||||||||||||||||| |||||
Sbjct: 430 ctgattcgtgctcatcaaatatatgg 455
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>gb|AF371975.2|AF371975 Arabidopsis thaliana putative c-myb-like transcription factor
           MYB3R-4 (MYB3R4) mRNA, complete cds
          Length = 3434

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 288 ctgattcgtgctcatcaaatctatgg 313
           |||||||||||||||||||| |||||
Sbjct: 757 ctgattcgtgctcatcaaatatatgg 782
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>emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project)
          Length = 101665

 Score = 44.1 bits (22), Expect = 1.2
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 288   ctgattcgtgctcatcaaatctatgg 313
             |||||||||||||||||||| |||||
Sbjct: 43364 ctgattcgtgctcatcaaatatatgg 43389
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>gb|AC193780.1| Solanum lycopersicum chromosome 10 clone C10HBa0115K16, complete
             sequence
          Length = 163868

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1218  caaaaggtacaatgatattcatgtc 1242
             |||||| ||||||||||||||||||
Sbjct: 33501 caaaagctacaatgatattcatgtc 33525
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>ref|NM_001053366.1| Oryza sativa (japonica cultivar-group) Os02g0470400 (Os02g0470400)
            mRNA, complete cds
          Length = 9267

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 217  gacaaaggtggagatacaaaa 237
            |||||||||||||||||||||
Sbjct: 3586 gacaaaggtggagatacaaaa 3606
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>gb|AC186548.3| Gallus gallus BAC clone TAM33-7F21 from chromosome z, complete sequence
          Length = 150358

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     atagctgcagtatcacaaatt 84
              |||||||||||||||||||||
Sbjct: 101310 atagctgcagtatcacaaatt 101290
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>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib
          Length = 2013089

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 791     aaggcctctacagcaaagggaacaaatga 819
               |||||||||||||||||| ||| ||||||
Sbjct: 1276564 aaggcctctacagcaaagtgaagaaatga 1276592
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>gb|AC130540.4| Mus musculus BAC clone RP23-474I3 from chromosome 14, complete sequence
          Length = 201412

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 394   aaagaaaattaaattcatatt 414
             |||||||||||||||||||||
Sbjct: 62729 aaagaaaattaaattcatatt 62749
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>gb|AC106857.8| Homo sapiens chromosome 8, clone RP11-262O21, complete sequence
          Length = 159454

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 504   aaagtttctgatattctgaat 524
             |||||||||||||||||||||
Sbjct: 19593 aaagtttctgatattctgaat 19613
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>gb|AC022666.14| Homo sapiens, clone RP11-30K7, complete sequence
          Length = 150721

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 504    aaagtttctgatattctgaat 524
              |||||||||||||||||||||
Sbjct: 125461 aaagtttctgatattctgaat 125441
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 667      catcagccaaagcccctgaaa 687
                |||||||||||||||||||||
Sbjct: 16474869 catcagccaaagcccctgaaa 16474889
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>dbj|AP005720.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1123_B08
          Length = 134028

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 667  catcagccaaagcccctgaaa 687
            |||||||||||||||||||||
Sbjct: 7094 catcagccaaagcccctgaaa 7114
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>dbj|AP005419.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0046G12
          Length = 189391

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 667    catcagccaaagcccctgaaa 687
              |||||||||||||||||||||
Sbjct: 163416 catcagccaaagcccctgaaa 163436
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>gb|AC126172.8| Homo sapiens 12 BAC RP11-654C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 111943

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 776    tgaagtaaattctcaaaggcctcta 800
              |||||||||||||||||||| ||||
Sbjct: 103479 tgaagtaaattctcaaaggcgtcta 103503
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>dbj|AP004852.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1371_D04
          Length = 105468

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   gacaaaggtggagatacaaaa 237
             |||||||||||||||||||||
Sbjct: 73184 gacaaaggtggagatacaaaa 73164
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>dbj|AP004787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0403C01
          Length = 145635

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   gacaaaggtggagatacaaaa 237
             |||||||||||||||||||||
Sbjct: 40483 gacaaaggtggagatacaaaa 40463
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>dbj|AP006382.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT32J05, TM0238,
             complete sequence
          Length = 131947

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 103   tgaaatggtcagaagaggaagataa 127
             ||||||||||| |||||||||||||
Sbjct: 65903 tgaaatggtcataagaggaagataa 65879
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>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
             sequence
          Length = 227692

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 456   aacctgtcaggcacacagaat 476
             |||||||||||||||||||||
Sbjct: 22413 aacctgtcaggcacacagaat 22433
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>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence
          Length = 209846

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 982   tatcagatcttatggaaatgtcata 1006
             |||||||||| ||||||||||||||
Sbjct: 58970 tatcagatctgatggaaatgtcata 58946
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>emb|AL683890.7| Mouse DNA sequence from clone RP23-120N11 on chromosome 4, complete
              sequence
          Length = 187392

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 801    cagcaaagggaacaaatgagtccag 825
              ||||||||||||||||| |||||||
Sbjct: 102541 cagcaaagggaacaaatcagtccag 102565
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>emb|AL672033.12| Mouse DNA sequence from clone RP23-436F2 on chromosome X, complete
             sequence
          Length = 181933

 Score = 42.1 bits (21), Expect = 4.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 454   aaaacctgtcaggcacacaga 474
             |||||||||||||||||||||
Sbjct: 13134 aaaacctgtcaggcacacaga 13114


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 265,919,846
Number of extensions: 14612178
Number of successful extensions: 298925
Number of sequences better than 10.0: 28
Number of HSP's gapped: 298925
Number of HSP's successfully gapped: 34
Length of query: 1275
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1252
Effective length of database: 18,503,978,556
Effective search space: 23166981152112
Effective search space used: 23166981152112
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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