| Clone Name | FLbaf65i22 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g66180:12001.t05979:unspliced-genomic cytochrome c, putative, expressed| Length = 2794 Score = 70.3 bits (147), Expect(3) = 8e-24 Identities = 27/45 (60%), Positives = 34/45 (75%) Frame = +3 / +3 Query: 159 GPNLNGLVGRQSGQAENYSYSAANKNSGVMWSEDTLFEYLLAPKK 293 GPNLNGL GRQSG A +SY + +K V+W E+TL++YLL PKK Sbjct: 1281 GPNLNGLFGRQSGTAPGFSYPSGDKIVPVIWEENTLYDYLLTPKK 1415 Score = 47.3 bits (97), Expect(3) = 8e-24 Identities = 19/36 (52%), Positives = 21/36 (58%) Frame = +3 / +1 Query: 75 GDATKGAKIFKTKCAQCHTVAAGGPHKQGPNLNGLV 182 GDA G KIF+TKCA CH V HK G N L+ Sbjct: 100 GDAAAGEKIFRTKCAYCHAVDKAAGHKHGEPPNHLM 207 Score = 36.8 bits (74), Expect(3) = 8e-24 Identities = 16/24 (66%), Positives = 18/24 (75%) Frame = +3 / +2 Query: 309 KMVFAGLKKPAERRDLIAYLIQAT 380 KM F GLK+P +R DLIAYL AT Sbjct: 2429 KMGFNGLKQPQDRADLIAYLKNAT 2500 Score = 35.0 bits (70), Expect = 0.51 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = -2 / -3 Query: 136 ATVWHCAHLVLKILAPLVASP 74 +T W AHLVLKI +P ASP Sbjct: 161 STAWQYAHLVLKIFSPAAASP 99
>LOC_Os05g34770:12005.t03070:unspliced-genomic cytochrome c, putative, expressed| Length = 2409 Score = 80.8 bits (170), Expect(2) = 1e-23 Identities = 31/45 (68%), Positives = 35/45 (77%) Frame = +3 / +2 Query: 159 GPNLNGLVGRQSGQAENYSYSAANKNSGVMWSEDTLFEYLLAPKK 293 GPNLNGL GRQSG YSYS ANKN V+W E+TL++YLL PKK Sbjct: 1022 GPNLNGLFGRQSGTTPGYSYSTANKNMAVIWEENTLYDYLLNPKK 1156 Score = 52.4 bits (108), Expect(2) = 1e-23 Identities = 20/29 (68%), Positives = 21/29 (72%) Frame = +3 / +2 Query: 75 GDATKGAKIFKTKCAQCHTVAAGGPHKQG 161 G+ G KIFKTKCAQCHTV G HKQG Sbjct: 116 GNPKAGEKIFKTKCAQCHTVDKGAGHKQG 202 Score = 39.1 bits (79), Expect(3) = 3e-11 Identities = 18/29 (62%), Positives = 19/29 (65%) Frame = -2 / -2 Query: 379 VAWIK*AIRSRRSAGFLRPANTILVPLMY 293 VA +* IRS RS GF P TILVP MY Sbjct: 1958 VASFR*EIRSARSCGFFNPGKTILVPGMY 1872 Score = 36.3 bits (73), Expect(3) = 3e-11 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -2 / -1 Query: 136 ATVWHCAHLVLKILAPLVASP 74 +TVWH AHLVLKI +P + P Sbjct: 177 STVWHWAHLVLKIFSPALGLP 115 Score = 35.0 bits (70), Expect(3) = 3e-11 Identities = 21/37 (56%), Positives = 21/37 (56%) Frame = -2 / -1 Query: 292 FLGASRYSNSVSSDHITPEFLLAAEYE*FSAWPDWRP 182 FLG SR S SV S IT FLLA E E* PD P Sbjct: 1155 FLGLSR*S*SVFSSQITAMFLLAVE*E*PGVVPDCLP 1045 Score = 56.5 bits (117), Expect = 2e-07 Identities = 25/50 (50%), Positives = 35/50 (70%) Frame = +3 / +1 Query: 231 KNSGVMWSEDTLFEYLLAPKKYIKGTKMVFAGLKKPAERRDLIAYLIQAT 380 ++S ++ +D+ E + +YI GTKMVF GLKKP ER DLI+YL +AT Sbjct: 1810 RSSLAIFVQDSWTESVFLIMQYIPGTKMVFPGLKKPQERADLISYLKEAT 1959 Score = 32.7 bits (65), Expect(2) = 0.021 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -1 / -1 Query: 368 QVGDQVATLSGLLEAGKHHLGALDVLLGREQVLEQRV 258 QVG++++TL LL+ + HLG+ DVL + L V Sbjct: 1947 QVGNKISTLLWLLQPREDHLGSRDVLHNEKNRLSPAV 1837 Score = 28.1 bits (55), Expect(2) = 0.021 Identities = 15/21 (71%), Positives = 15/21 (71%) Frame = -1 / -3 Query: 158 LLVRAAGRDRVALRALGLEDL 96 LLV A D VAL ALGLEDL Sbjct: 199 LLVAGALVDGVALGALGLEDL 137
>LOC_Os03g22400:12003.t01991:unspliced-genomic sentrin-specific protease 2, putative, expressed| Length = 4694 Score = 35.4 bits (71), Expect = 0.37 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -2 / +3 Query: 73 VPLMMLFGGAWCWGNWGSGWK 11 +PL++LFGG +C G +G GW+ Sbjct: 2601 IPLLLLFGGQYCVGLFG*GWE 2663
>LOC_Os05g22340:12005.t01895:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 6663 Score = 33.1 bits (66), Expect(2) = 0.78 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = -1 / -2 Query: 335 LLEAGKHHLGALDVLLGREQVLEQRVFRPHH 243 ++EA ++H+G L +++ Q+LEQRV+ H Sbjct: 1172 IIEAIENHVGLLQLIISTPQLLEQRVWHQIH 1080 Score = 23.5 bits (45), Expect(2) = 0.78 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = -2 / -3 Query: 553 LPTIAVLSQKRSH*PNGGPASTSSKQQSHVSPEGFF 446 +P+ S KRS N P+ ++ + S VSP FF Sbjct: 1657 VPSPMSTSSKRSAYVNP*PSFSTPSKSSIVSPISFF 1550
>LOC_Os06g51029:12006.t04786:unspliced-genomic OsFtsH1 - Oryza sativa FtsH protease, homologue of AtFtsH1/5,| expressed Length = 7677 Score = 34.1 bits (68), Expect = 0.96 Identities = 14/25 (56%), Positives = 15/25 (60%) Frame = +3 / -2 Query: 18 PDPQFPQHQAPPKSIMSGTGDATKG 92 P PQ PQH P S SG+ ATKG Sbjct: 7208 PSPQHPQHPRWPSSSPSGSTSATKG 7134
>LOC_Os10g22960:12010.t01774:unspliced-genomic catalytic/ hydrolase, putative, expressed| Length = 4189 Score = 33.6 bits (67), Expect = 1.3 Identities = 16/66 (24%), Positives = 28/66 (42%) Frame = +3 / -3 Query: 48 PPKSIMSGTGDATKGAKIFKTKCAQCHTVAAGGPHKQGPNLNGLVGRQSGQAENYSYSAA 227 PPK SGT A A + K A C A P ++ + G +G ++ ++ + + Sbjct: 413 PPKKTRSGTNGARPAAMSGRRKGAHCQVARAPKPWRRRTGWSAAAGGAAGGSQRWTTAPS 234 Query: 228 NKNSGV 245 + V Sbjct: 233 GSGTAV 216
>LOC_Os04g51950:12004.t04671:unspliced-genomic serine/threonine protein kinase, putative, expressed| Length = 4028 Score = 33.6 bits (67), Expect = 1.3 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 / +1 Query: 462 ETCDCCLLDVLAGPPFGQCERF 527 + C CC + VL PP G C F Sbjct: 3781 DACSCCFMPVLYNPPAGTCTNF 3846
>LOC_Os04g44740:12004.t04012:unspliced-genomic transferase/ transferase, transferring glycosyl groups, putative,| expressed Length = 3616 Score = 26.7 bits (52), Expect(2) = 1.4 Identities = 10/23 (43%), Positives = 11/23 (47%) Frame = +2 / +2 Query: 254 GRHAVRVPARAQEVHQGHQDGVC 322 GR V V A HQG + G C Sbjct: 230 GRRPVHVRAHGASCHQGERHGAC 298 Score = 24.0 bits (46), Expect(2) = 1.4 Identities = 6/15 (40%), Positives = 10/15 (66%) Frame = +3 / +1 Query: 432 QRWKRKKPSGETCDC 476 +RW+R++ G C C Sbjct: 310 RRWRRRRRRGSHCHC 354
>LOC_Os01g71540:12001.t06448:unspliced-genomic expressed protein| Length = 8230 Score = 33.1 bits (66), Expect = 1.8 Identities = 11/34 (32%), Positives = 20/34 (58%) Frame = -2 / -2 Query: 502 GPASTSSKQQSHVSPEGFFRFQRWKGCLWVCSIY 401 G ++ + +Q HV+ E F F WK +WV +++ Sbjct: 2151 G*STMAEQQLDHVNREPFSSFMEWKNSIWVNAVW 2050
>LOC_Os04g51390:12004.t04616:unspliced-genomic apospory-associated protein C, putative, expressed| Length = 5166 Score = 32.7 bits (65), Expect = 2.5 Identities = 10/34 (29%), Positives = 16/34 (47%) Frame = -2 / +3 Query: 469 HVSPEGFFRFQRWKGCLWVCSIYSEVLLGSVAWI 368 H E + R Q WK + +C + +LL W+ Sbjct: 2832 HFQYETYLRLQNWKSGVLLCKTFGGILLNFTCWV 2933
>LOC_Os02g22720:12002.t02059:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5367 Score = 32.7 bits (65), Expect = 2.5 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -1 / -3 Query: 332 LEAGKHHLGALDVLLGREQVLEQRVFRPHH 243 +EA ++H+G L +++ Q+LEQRV+ H Sbjct: 283 IEAIENHVGLLQLIISTSQLLEQRVWHQIH 194
>LOC_Os06g19540:12006.t01773:unspliced-genomic b-keto acyl reductase, putative, expressed| Length = 1990 Score = 32.2 bits (64), Expect = 3.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 / -3 Query: 584 CWRRELPCPLPPNDCRSLPKAFAL 513 C R+ LPCP PP+ LP +L Sbjct: 503 C*RQRLPCPAPPSPATPLPSPLSL 432
>LOC_Os01g52000:12001.t04628:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4302 Score = 32.2 bits (64), Expect = 3.4 Identities = 12/48 (25%), Positives = 21/48 (43%) Frame = +3 / +2 Query: 423 HPFQRWKRKKPSGETCDCCLLDVLAGPPFGQCERFWERTAIVGRKRAG 566 H ++W ++P+ C L + PP G+C + R+ AG Sbjct: 551 HLRRQWVDRRPTRSACGRRRLPLAGSPPMGRCSSLKRSGKLTSRRTAG 694
>LOC_Os12g09990:12012.t00876:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5382 Score = 29.9 bits (59), Expect(2) = 3.8 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -2 / -2 Query: 46 AWCWGNWGSGW 14 AWCW W SGW Sbjct: 557 AWCWCLWPSGW 525 Score = 24.0 bits (46), Expect(2) = 3.8 Identities = 9/22 (40%), Positives = 11/22 (50%) Frame = -2 / -1 Query: 385 GSVAWIK*AIRSRRSAGFLRPA 320 G W +R RRS G RP+ Sbjct: 1641 GIAPWCAKNVRGRRSKGLFRPS 1576
>LOC_Os11g16310:12011.t01411:unspliced-genomic expressed protein| Length = 4691 Score = 31.8 bits (63), Expect = 4.7 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = -3 / -3 Query: 309 WCP*CTSWARAGTRTA 262 WCP C SW +AGT A Sbjct: 3546 WCPACCSWGQAGTPPA 3499
>LOC_Os08g31670:12008.t02912:unspliced-genomic carbohydrate transporter/ sugar porter/ transporter, putative,| expressed Length = 2840 Score = 31.8 bits (63), Expect = 4.7 Identities = 8/17 (47%), Positives = 8/17 (47%) Frame = -2 / +2 Query: 52 GGAWCWGNWGSGWKFQT 2 GG WCW W W T Sbjct: 17 GGRWCWSTWRPSWSAPT 67
>LOC_Os08g30850:12008.t02836:unspliced-genomic YDG/SRA domain containing protein, expressed| Length = 3306 Score = 31.8 bits (63), Expect = 4.7 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 / +1 Query: 69 GTGDATKGAKIFKTKCAQCHTVAAGGPHKQGPNLNGLVGRQ 191 G GDA GA ++C + AAGG + G + G G + Sbjct: 187 GGGDARAGAAALPSRCPRRPVAAAGGRGEGGDRMRGRGGEE 309
>LOC_Os07g08960:12007.t00771:unspliced-genomic glycine-rich RNA-binding protein 7, putative, expressed| Length = 3826 Score = 31.8 bits (63), Expect = 4.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 / +3 Query: 248 VVGRHAVRVPARAQEVHQGHQD 313 VVG H AR Q V QGH+D Sbjct: 300 VVGHHGAHARARLQRVRQGHRD 365
>LOC_Os06g36510:12006.t03347:unspliced-genomic hypothetical protein| Length = 2369 Score = 31.8 bits (63), Expect = 4.7 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -2 / +2 Query: 82 ASPVPLMMLFGGAWCWGNWGSG 17 A+P P +M GG W WG G G Sbjct: 113 ATPPPCVMWTGGRWGWGRLGRG 178
>LOC_Os05g50570:12005.t04489:unspliced-genomic serine carboxypeptidase-like precursor, putative, expressed| Length = 1561 Score = 31.8 bits (63), Expect = 4.7 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = -1 / -2 Query: 581 WRRELPCPLPPNDCRSLPKAFALTKRWACQHVQQTTIA 468 WRR +PC P P+A T R A +H Q + A Sbjct: 1446 WRRTIPCRTPNPRSSPAPRALEKTARSAPRHTPQRSRA 1333
>LOC_Os03g17470:12003.t01523:unspliced-genomic IN2-1 protein, putative, expressed| Length = 2826 Score = 31.8 bits (63), Expect = 4.7 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 / -3 Query: 9 NFQPDPQFPQHQAPPKSIMSGTGDATKGAKIFKTKCAQ 122 N++P PQ + P S T A KG+ +T CA+ Sbjct: 745 NYEPSPQIKEQHVIPCSSWQSTRAARKGSGTQRTTCAR 632
>LOC_Os01g12680:12001.t01134:unspliced-genomic C4-dicarboxylate transporter/malic acid transport protein, expressed| Length = 6106 Score = 31.8 bits (63), Expect = 4.7 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -3 / -1 Query: 324 RQTPSWCP*CTSWARAGTRTA 262 R TP+WCP T W AG R A Sbjct: 3490 RGTPAWCPGRTPWR*AGRRRA 3428
>LOC_Os08g11180:12008.t01000:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5761 Score = 24.9 bits (48), Expect(2) = 5.7 Identities = 8/14 (57%), Positives = 11/14 (78%) Frame = -1 / -3 Query: 515 LTKRWACQHVQQTT 474 L +RW CQ VQ++T Sbjct: 4706 LFRRWLCQDVQKST 4665 Score = 23.5 bits (45), Expect(2) = 5.7 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = -1 / -2 Query: 581 WRRELPCPLPPNDCRSLP 528 W+R +P PP+ CR P Sbjct: 4779 WQRRVPPL*PPS*CRGQP 4726
>LOC_Os02g50840:12002.t04668:unspliced-genomic DNA binding protein, putative, expressed| Length = 7201 Score = 31.3 bits (62), Expect = 6.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -2 / +2 Query: 442 FQRWKGCLWVCSIYSEVLLGSVAWIK*AIRSRR 344 F W+ CL + +Y +LGS+ I AI+ RR Sbjct: 2660 FVHWRNCLLILLLYKVAVLGSLLIICEAIKIRR 2758
>LOC_Os02g33620:12002.t03005:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5036 Score = 31.3 bits (62), Expect = 6.5 Identities = 8/11 (72%), Positives = 8/11 (72%) Frame = -2 / -1 Query: 52 GGAWCWGNWGS 20 GG WCW WGS Sbjct: 3266 GGCWCWSAWGS 3234
>LOC_Os02g24470:12002.t02144:unspliced-genomic hypothetical protein| Length = 474 Score = 31.3 bits (62), Expect = 6.5 Identities = 19/47 (40%), Positives = 20/47 (42%) Frame = +2 / -3 Query: 257 RHAVRVPARAQEVHQGHQDGVCRPQEAR*ASRPDRLLDPGD*PEQHL 397 RHA+R P R EVH Q C A AS R L P P L Sbjct: 418 RHALRFPRRPPEVHPRRQQWRCCHCSASAASPVRRPLSPPPLPAPEL 278
>LOC_Os11g04190:12011.t00310:unspliced-genomic auxin efflux carrier component 1b, putative, expressed| Length = 3300 Score = 27.6 bits (54), Expect(2) = 8.1 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = -2 / +2 Query: 127 WHCAHLVLKILAPLVASPVP 68 WHC+H L + PL+ P P Sbjct: 2198 WHCSHGSLPVGTPLLRMPWP 2257 Score = 24.4 bits (47), Expect(2) = 8.1 Identities = 9/18 (50%), Positives = 11/18 (61%) Frame = -3 / +2 Query: 312 SWCP*CTSWARAGTRTAC 259 SWC S A +GTR+ C Sbjct: 626 SWCRSSCSSASSGTRSCC 679
>LOC_Os11g27650:12011.t02379:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 3909 Score = 30.9 bits (61), Expect = 8.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 / -2 Query: 587 LCWRRELPCPLPPNDCRSLPKAFALTKR 504 LC EL CP P D S +AF+ T R Sbjct: 623 LCTTLELDCPPSPLDAASFSRAFSSTSR 540
>LOC_Os10g14990:12010.t01167:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2363 Score = 30.9 bits (61), Expect = 8.9 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -1 / -1 Query: 332 LEAGKHHLGALDVLLGREQVLEQRVFRPHH 243 +EA ++H+G L +++ Q LEQRV+ H Sbjct: 1964 IEAIENHVGLLQLIISTPQPLEQRVWHQIH 1875
>LOC_Os08g37640:12008.t03501:unspliced-genomic hypothetical protein| Length = 465 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/42 (21%), Positives = 17/42 (40%) Frame = +3 / +2 Query: 411 HTHRHPFQRWKRKKPSGETCDCCLLDVLAGPPFGQCERFWER 536 H + P +W +++P G C + PP W++ Sbjct: 98 HPYAQPHYKWYKQEPDGTACKSSTVSTSGLPPTAHTTTSWQQ 223
>LOC_Os08g29000:12008.t02655:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass| Length = 5677 Score = 30.9 bits (61), Expect = 8.9 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = -1 / -1 Query: 587 LCWRRELPCPLPPNDCRSLPKAFALTKR 504 LC L CPL P D S +AF+ T R Sbjct: 562 LCTTLALDCPLSPLDTTSFSRAFSSTSR 479
>LOC_Os05g37020:12005.t03246:unspliced-genomic hypothetical protein| Length = 1439 Score = 30.9 bits (61), Expect = 8.9 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = +3 / -3 Query: 33 PQHQAPPKSIMSGTGDATKGAKIFKTKCAQCHTVAAGGPHKQGP 164 P+H A + G+ AT+G + T + T +GGP GP Sbjct: 648 PRHSAVRSQVAEGSLAATRG*SLPSTSALEGTTYHSGGPFCAGP 517
>LOC_Os04g37600:12004.t03330:unspliced-genomic phosphate carrier protein, mitochondrial precursor, putative,| expressed Length = 4966 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = -2 / -3 Query: 67 LMMLFGGAWCWGNWGSGW 14 L +LF WCW N S W Sbjct: 4472 LQLLFTNGWCWSNSTSSW 4419
>LOC_Os01g62480:12001.t05623:unspliced-genomic L-ascorbate oxidase precursor, putative, expressed| Length = 2987 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -1 / -2 Query: 560 PLPPNDCRSLPKAFALTKRWAC 495 P PP C + P A++ + RW C Sbjct: 2350 PAPPTCCTAAPAAWSRSSRWCC 2285
>LOC_Os01g35390:12001.t03092:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 3733 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = +3 / -3 Query: 417 HRHPFQRWKRKKPSGETC 470 +RH Q+W RK P+G+ C Sbjct: 2786 YRHQTQQWARKNPAGKLC 2733
>LOC_Os01g16750:12001.t01524:unspliced-genomic disulfide oxidoreductase/ monooxygenase/ oxidoreductase, putative| Length = 2118 Score = 30.9 bits (61), Expect = 8.9 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = -3 / +2 Query: 324 RQTPSWCP*CTSWARAGTRTA 262 R T WCP C +W R+ R++ Sbjct: 452 RTTRGWCPRCPAWTRSPARSS 514 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 205,367,718 Number of extensions: 3016173 Number of successful extensions: 17910 Number of sequences better than 10.0: 36 Length of query: 211 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 163 Effective length of database: 52,912,542 Effective search space: 8624744346 Effective search space used: 8624744346 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)