ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63a22 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001060402.1| Oryza sativa (japonica cultivar-group) Os04g0615100 (Os04g0615100) mRNA, complete cds Length = 2332 Score = 1029 bits (519), Expect = 0.0 Identities = 1191/1415 (84%) Strand = Plus / Plus Query: 250 gtgctggaggacttgatccgggcgatcgagctgtggctgcggatcgccaaggagcaggtg 309 ||||||||||| |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 439 gtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggta 498 Query: 310 ccgctggtggaccccagcctcgacccggtgctgctcgtgcccggcatcggcggctctatc 369 || ||||||| || | ||| |||||||| ||||| || |||||||| |||||||| || Sbjct: 499 cccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgatt 558 Query: 370 ctcgaggccgtggacgaggccgggaacaaggagcgggtgtgggtgcgcatcctcgccgcc 429 || || ||||| || ||||||||||| |||||| |||||||||||||||||||||| || Sbjct: 559 cttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgctgcg 618 Query: 430 gaccacgagtgccgcgagaagctctgggcgcagttcgatgcctccaccggcaaaactgtc 489 || || |||| || | | |||||| | |||| ||||| ||||| || ||||||||| Sbjct: 619 gatcatgagtttcgagcacatctctggtccaagtttgatgcttccactgggaaaactgtc 678 Query: 490 tctgtggatgagaaaatacgcatcactgtccctgaggataggtatggattgtacgccatc 549 ||||| |||||||||| | || ||||||||||||||| |||||| | ||||| || Sbjct: 679 tctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggactatacgctatt 738 Query: 550 gacacactggacccagacctgattattggtgacgacagtgtttactactatcacgacatg 609 ||||| |||||||| ||| |||| ||||| || || ||||||| |||||||||||||||| Sbjct: 739 gacactctggaccccgacatgatcattggcgatgatagtgtttgctactatcacgacatg 798 Query: 610 atagtgcaaatgattaaatggggatatcaagaaggcaaaactctgtttggatttggttac 669 |||||||||||||| ||||||||||| ||||| || ||||| | |||||||||||||| Sbjct: 799 atagtgcaaatgatcaaatggggataccaagaggggaaaacattatttggatttggttat 858 Query: 670 gatttccgccaaagtaacaggctttcggaaacacttgacaaattttctaaaaaactagag 729 ||||||||||| |||||||||||||| ||||||||||| | |||||| | ||| | ||| Sbjct: 859 gatttccgccagagtaacaggctttcagaaacacttgatagattttccagaaagttggag 918 Query: 730 tcagtatacacagcttcaggaggaaaaaagatcaatctaataacacattcaatgggggga 789 ||||| |||| |||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 919 tcagtttacatagcttccggagaaaaaaagatcaatctcattactcattcaatgggagga 978 Query: 790 ttgcttgttaaatgcttcatgtctcttcatggtgatgtcttcgaaaaatatgtgaagagt 849 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| | |||||| Sbjct: 979 ttgcttgtcaaatgcttcatgtccctccatagtgatgtcttcgagaaatacataaagagt 1038 Query: 850 tggattgcaattgctgcaccatttcaaggtgcgcctgggtacataaatagtgctctgctg 909 |||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||| Sbjct: 1039 tggattgcaattgctgcaccatttcaaggtgcacctgggtacataactactagtctgctg 1098 Query: 910 aatggaatgtcttttgtggaaggatggcaatccaaattcttcatttccaaatggaccatg 969 ||||| ||||||||||| ||||||||| | || | |||||| |||||||| |||| ||| Sbjct: 1099 aatggtatgtcttttgtcgaaggatgggagtcaagattctttatttccaagtggagtatg 1158 Query: 970 cagcaattgttaattgaatgcccatcaatatacgagttgttggctagctcaacctaccac 1029 ||||||||||| | |||||||||||||| ||||| |||||||||| ||| |||| ||| Sbjct: 1159 cagcaattgttgctcgaatgcccatcaatttacgaattgttggctaactcgaccttccaa 1218 Query: 1030 tgggaagatacaccattgctacagatctggagagagagcttagatgacaatggcaagaaa 1089 ||||||||||| |||| || |||||||||||| ||| || ||| |||||||||||| Sbjct: 1219 tgggaagatactccatatctgcagatctggagacagaaattggatactaatggcaagaaa 1278 Query: 1090 agtgccatactggagtcgtatgaaccagatgaggcaataaagatgattcaaaaagctctt 1149 |||||||| | ||||| ||||| |||||||| |||||||| |||||| | |||||||| Sbjct: 1279 agtgccatgttagagtcatatgagccagatgaagcaataaaaatgattagagaagctctt 1338 Query: 1150 tccaagcatgagattatctctgatggaaatcacattcctctgcctcttaatgaggatata 1209 |||||||||||||| || |||||||| | |||||||| |||| ||| || ||||||| Sbjct: 1339 tccaagcatgagatcatttctgatggtatgcacattccattgccccttgatatggatata 1398 Query: 1210 ttaatatgggcgaaggaaactcaagatatcttatcccaggcaaagcttccaaaatcagtg 1269 || | |||||| || || || || ||| | || | | | ||||||||||||||||||||| Sbjct: 1399 ttgagatgggcaaaagagacacaggatgttttgtgcaatgcaaagcttccaaaatcagtg 1458 Query: 1270 aagttctacaatatttacgggattgattatgagactgctcatactgtttgctacgggagc 1329 |||||||||||||||||||| | ||||||||| ||||| ||||| ||| |||||||||| Sbjct: 1459 aagttctacaatatttacggaactgattatgacactgcccataccgttcgctacgggagt 1518 Query: 1330 aaacgccaccctgtttcaaatcttagtcacctcttatatactcagggtaaatacatctgt 1389 ||| ||| || |||||||||| ||| ||||||| ||||||||||| || ||||||||| Sbjct: 1519 gaacaccatccaatttcaaatctcagtgacctcttgtatactcagggcaactacatctgt 1578 Query: 1390 gttgatggtgatggatccgttcccgcagaatcagcaaaggcggacggccttgatgcagtg 1449 ||||||||||||||||| || || | ||||||||||||||| || ||||| ||||||||| Sbjct: 1579 gttgatggtgatggatctgtccctgtagaatcagcaaaggcagatggcctcgatgcagtg 1638 Query: 1450 gcgagaattggggttgctgccgaccaccgaggaatcgtgtgcgaccaccacgtgttccgc 1509 || ||| ||||||||||||| ||||||||||||||||| || || | ||||||||||| Sbjct: 1639 gcaagagttggggttgctgcagaccaccgaggaatcgtctgtgatcgtcacgtgttccgg 1698 Query: 1510 atagtccagcactggctgcacgcaggcgaacctgacccattctacgaccccctcaatgac 1569 ||| | ||||||||||| || || || || ||||||||||||||||| |||||||| ||| Sbjct: 1699 ataattcagcactggctccatgccggtgagcctgacccattctacgatcccctcaacgac 1758 Query: 1570 tatgtcatcctgccaaccatctacgagatcgagaagcaccacgagaaacgtggcgacgtc 1629 || ||||| || ||||| || ||||||||||||| |||||||||||| || || || Sbjct: 1759 tacgtcatactcccaacagccttcgagatcgagaagtaccacgagaaacacggggatatc 1818 Query: 1630 acgtcggtgagggaggactgggagatcatctccca 1664 || ||||| || ||||||||||||||||||||||| Sbjct: 1819 acatcggttagagaggactgggagatcatctccca 1853 Score = 50.1 bits (25), Expect = 0.033 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1802 ggcagcatgtggaagtcagggctgttggagtca 1834 |||||||||||||||| ||||| |||||||||| Sbjct: 1988 ggcagcatgtggaagttagggcagttggagtca 2020
>dbj|AK069739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J22, full insert sequence Length = 2334 Score = 1029 bits (519), Expect = 0.0 Identities = 1191/1415 (84%) Strand = Plus / Plus Query: 250 gtgctggaggacttgatccgggcgatcgagctgtggctgcggatcgccaaggagcaggtg 309 ||||||||||| |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 441 gtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggta 500 Query: 310 ccgctggtggaccccagcctcgacccggtgctgctcgtgcccggcatcggcggctctatc 369 || ||||||| || | ||| |||||||| ||||| || |||||||| |||||||| || Sbjct: 501 cccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgatt 560 Query: 370 ctcgaggccgtggacgaggccgggaacaaggagcgggtgtgggtgcgcatcctcgccgcc 429 || || ||||| || ||||||||||| |||||| |||||||||||||||||||||| || Sbjct: 561 cttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgctgcg 620 Query: 430 gaccacgagtgccgcgagaagctctgggcgcagttcgatgcctccaccggcaaaactgtc 489 || || |||| || | | |||||| | |||| ||||| ||||| || ||||||||| Sbjct: 621 gatcatgagtttcgagcacatctctggtccaagtttgatgcttccactgggaaaactgtc 680 Query: 490 tctgtggatgagaaaatacgcatcactgtccctgaggataggtatggattgtacgccatc 549 ||||| |||||||||| | || ||||||||||||||| |||||| | ||||| || Sbjct: 681 tctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggactatacgctatt 740 Query: 550 gacacactggacccagacctgattattggtgacgacagtgtttactactatcacgacatg 609 ||||| |||||||| ||| |||| ||||| || || ||||||| |||||||||||||||| Sbjct: 741 gacactctggaccccgacatgatcattggcgatgatagtgtttgctactatcacgacatg 800 Query: 610 atagtgcaaatgattaaatggggatatcaagaaggcaaaactctgtttggatttggttac 669 |||||||||||||| ||||||||||| ||||| || ||||| | |||||||||||||| Sbjct: 801 atagtgcaaatgatcaaatggggataccaagaggggaaaacattatttggatttggttat 860 Query: 670 gatttccgccaaagtaacaggctttcggaaacacttgacaaattttctaaaaaactagag 729 ||||||||||| |||||||||||||| ||||||||||| | |||||| | ||| | ||| Sbjct: 861 gatttccgccagagtaacaggctttcagaaacacttgatagattttccagaaagttggag 920 Query: 730 tcagtatacacagcttcaggaggaaaaaagatcaatctaataacacattcaatgggggga 789 ||||| |||| |||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 921 tcagtttacatagcttccggagaaaaaaagatcaatctcattactcattcaatgggagga 980 Query: 790 ttgcttgttaaatgcttcatgtctcttcatggtgatgtcttcgaaaaatatgtgaagagt 849 |||||||| |||||||||||||| || ||| ||||||||||||| ||||| | |||||| Sbjct: 981 ttgcttgtcaaatgcttcatgtccctccatagtgatgtcttcgagaaatacataaagagt 1040 Query: 850 tggattgcaattgctgcaccatttcaaggtgcgcctgggtacataaatagtgctctgctg 909 |||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||| Sbjct: 1041 tggattgcaattgctgcaccatttcaaggtgcacctgggtacataactactagtctgctg 1100 Query: 910 aatggaatgtcttttgtggaaggatggcaatccaaattcttcatttccaaatggaccatg 969 ||||| ||||||||||| ||||||||| | || | |||||| |||||||| |||| ||| Sbjct: 1101 aatggtatgtcttttgtcgaaggatgggagtcaagattctttatttccaagtggagtatg 1160 Query: 970 cagcaattgttaattgaatgcccatcaatatacgagttgttggctagctcaacctaccac 1029 ||||||||||| | |||||||||||||| ||||| |||||||||| ||| |||| ||| Sbjct: 1161 cagcaattgttgctcgaatgcccatcaatttacgaattgttggctaactcgaccttccaa 1220 Query: 1030 tgggaagatacaccattgctacagatctggagagagagcttagatgacaatggcaagaaa 1089 ||||||||||| |||| || |||||||||||| ||| || ||| |||||||||||| Sbjct: 1221 tgggaagatactccatatctgcagatctggagacagaaattggatactaatggcaagaaa 1280 Query: 1090 agtgccatactggagtcgtatgaaccagatgaggcaataaagatgattcaaaaagctctt 1149 |||||||| | ||||| ||||| |||||||| |||||||| |||||| | |||||||| Sbjct: 1281 agtgccatgttagagtcatatgagccagatgaagcaataaaaatgattagagaagctctt 1340 Query: 1150 tccaagcatgagattatctctgatggaaatcacattcctctgcctcttaatgaggatata 1209 |||||||||||||| || |||||||| | |||||||| |||| ||| || ||||||| Sbjct: 1341 tccaagcatgagatcatttctgatggtatgcacattccattgccccttgatatggatata 1400 Query: 1210 ttaatatgggcgaaggaaactcaagatatcttatcccaggcaaagcttccaaaatcagtg 1269 || | |||||| || || || || ||| | || | | | ||||||||||||||||||||| Sbjct: 1401 ttgagatgggcaaaagagacacaggatgttttgtgcaatgcaaagcttccaaaatcagtg 1460 Query: 1270 aagttctacaatatttacgggattgattatgagactgctcatactgtttgctacgggagc 1329 |||||||||||||||||||| | ||||||||| ||||| ||||| ||| |||||||||| Sbjct: 1461 aagttctacaatatttacggaactgattatgacactgcccataccgttcgctacgggagt 1520 Query: 1330 aaacgccaccctgtttcaaatcttagtcacctcttatatactcagggtaaatacatctgt 1389 ||| ||| || |||||||||| ||| ||||||| ||||||||||| || ||||||||| Sbjct: 1521 gaacaccatccaatttcaaatctcagtgacctcttgtatactcagggcaactacatctgt 1580 Query: 1390 gttgatggtgatggatccgttcccgcagaatcagcaaaggcggacggccttgatgcagtg 1449 ||||||||||||||||| || || | ||||||||||||||| || ||||| ||||||||| Sbjct: 1581 gttgatggtgatggatctgtccctgtagaatcagcaaaggcagatggcctcgatgcagtg 1640 Query: 1450 gcgagaattggggttgctgccgaccaccgaggaatcgtgtgcgaccaccacgtgttccgc 1509 || ||| ||||||||||||| ||||||||||||||||| || || | ||||||||||| Sbjct: 1641 gcaagagttggggttgctgcagaccaccgaggaatcgtctgtgatcgtcacgtgttccgg 1700 Query: 1510 atagtccagcactggctgcacgcaggcgaacctgacccattctacgaccccctcaatgac 1569 ||| | ||||||||||| || || || || ||||||||||||||||| |||||||| ||| Sbjct: 1701 ataattcagcactggctccatgccggtgagcctgacccattctacgatcccctcaacgac 1760 Query: 1570 tatgtcatcctgccaaccatctacgagatcgagaagcaccacgagaaacgtggcgacgtc 1629 || ||||| || ||||| || ||||||||||||| |||||||||||| || || || Sbjct: 1761 tacgtcatactcccaacagccttcgagatcgagaagtaccacgagaaacacggggatatc 1820 Query: 1630 acgtcggtgagggaggactgggagatcatctccca 1664 || ||||| || ||||||||||||||||||||||| Sbjct: 1821 acatcggttagagaggactgggagatcatctccca 1855 Score = 50.1 bits (25), Expect = 0.033 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1802 ggcagcatgtggaagtcagggctgttggagtca 1834 |||||||||||||||| ||||| |||||||||| Sbjct: 1990 ggcagcatgtggaagttagggcagttggagtca 2022
>emb|CT827952.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525G02, complete sequence Length = 112944 Score = 178 bits (90), Expect = 5e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 1435 ggccttgatgcagtggcgagaattggggttgctgccgaccaccgaggaatcgtgtgcgac 1494 ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| || || Sbjct: 828 ggcctcgatgcagtggcaagagttggggttgctgcagaccaccgaggaatcgtctgtgat 887 Query: 1495 caccacgtgttccgcatagtccagcactggctgcacgcaggcgaacctgacccattctac 1554 | ||||||||||| ||| | ||||||||||| || || || || ||||||||||||||| Sbjct: 888 cgtcacgtgttccggataattcagcactggctccatgccggtgagcctgacccattctac 947 Query: 1555 gaccccctcaatgactatgtcatcctgccaaccatctacgagatcgagaagcaccacgag 1614 || |||||||| ||||| ||||| || ||||| || ||||||||||||| |||||||| Sbjct: 948 gatcccctcaacgactacgtcatactcccaacagccttcgagatcgagaagtaccacgag 1007 Query: 1615 aaacgtggcgacgtcacgtcggtgagggaggactgggagatcatctccca 1664 |||| || || |||| ||||| || ||||||||||||||||||||||| Sbjct: 1008 aaacacggggatatcacatcggttagagaggactgggagatcatctccca 1057 Score = 91.7 bits (46), Expect = 1e-14 Identities = 58/62 (93%) Strand = Plus / Plus Query: 1252 aagcttccaaaatcagtgaagttctacaatatttacgggattgattatgagactgctcat 1311 |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||| Sbjct: 1 aagcttccaaaatcagtgaagttctacaatatttacggaactgattatgacactgcccat 60 Query: 1312 ac 1313 || Sbjct: 61 ac 62 Score = 69.9 bits (35), Expect = 4e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 1371 tcagggtaaatacatctgtgttgatggtgatggatccgttcccgcagaatcagcaaagg 1429 |||||| || |||||||||||||||||||||||||| || || | |||||||||||||| Sbjct: 658 tcagggcaactacatctgtgttgatggtgatggatctgtccctgtagaatcagcaaagg 716 Score = 50.1 bits (25), Expect = 0.033 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1802 ggcagcatgtggaagtcagggctgttggagtca 1834 |||||||||||||||| ||||| |||||||||| Sbjct: 1192 ggcagcatgtggaagttagggcagttggagtca 1224
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 178 bits (90), Expect = 5e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 1435 ggccttgatgcagtggcgagaattggggttgctgccgaccaccgaggaatcgtgtgcgac 1494 ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| || || Sbjct: 31252780 ggcctcgatgcagtggcaagagttggggttgctgcagaccaccgaggaatcgtctgtgat 31252839 Query: 1495 caccacgtgttccgcatagtccagcactggctgcacgcaggcgaacctgacccattctac 1554 | ||||||||||| ||| | ||||||||||| || || || || ||||||||||||||| Sbjct: 31252840 cgtcacgtgttccggataattcagcactggctccatgccggtgagcctgacccattctac 31252899 Query: 1555 gaccccctcaatgactatgtcatcctgccaaccatctacgagatcgagaagcaccacgag 1614 || |||||||| ||||| ||||| || ||||| || ||||||||||||| |||||||| Sbjct: 31252900 gatcccctcaacgactacgtcatactcccaacagccttcgagatcgagaagtaccacgag 31252959 Query: 1615 aaacgtggcgacgtcacgtcggtgagggaggactgggagatcatctccca 1664 |||| || || |||| ||||| || ||||||||||||||||||||||| Sbjct: 31252960 aaacacggggatatcacatcggttagagaggactgggagatcatctccca 31253009 Score = 151 bits (76), Expect = 1e-32 Identities = 151/176 (85%) Strand = Plus / Plus Query: 250 gtgctggaggacttgatccgggcgatcgagctgtggctgcggatcgccaaggagcaggtg 309 ||||||||||| |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 31249494 gtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggta 31249553 Query: 310 ccgctggtggaccccagcctcgacccggtgctgctcgtgcccggcatcggcggctctatc 369 || ||||||| || | ||| |||||||| ||||| || |||||||| |||||||| || Sbjct: 31249554 cccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgatt 31249613 Query: 370 ctcgaggccgtggacgaggccgggaacaaggagcgggtgtgggtgcgcatcctcgc 425 || || ||||| || ||||||||||| |||||| |||||||||||||||||||||| Sbjct: 31249614 cttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgc 31249669 Score = 137 bits (69), Expect = 2e-28 Identities = 150/177 (84%) Strand = Plus / Plus Query: 985 gaatgcccatcaatatacgagttgttggctagctcaacctaccactgggaagatacacca 1044 |||||||||||||| ||||| |||||||||| ||| |||| ||| ||||||||||| ||| Sbjct: 31251593 gaatgcccatcaatttacgaattgttggctaactcgaccttccaatgggaagatactcca 31251652 Query: 1045 ttgctacagatctggagagagagcttagatgacaatggcaagaaaagtgccatactggag 1104 | || |||||||||||| ||| || ||| |||||||||||||||||||| | ||| Sbjct: 31251653 tatctgcagatctggagacagaaattggatactaatggcaagaaaagtgccatgttagag 31251712 Query: 1105 tcgtatgaaccagatgaggcaataaagatgattcaaaaagctctttccaagcatgag 1161 || ||||| |||||||| |||||||| |||||| | |||||||||||||||||||| Sbjct: 31251713 tcatatgagccagatgaagcaataaaaatgattagagaagctctttccaagcatgag 31251769 Score = 129 bits (65), Expect = 4e-26 Identities = 95/105 (90%) Strand = Plus / Plus Query: 586 agtgtttactactatcacgacatgatagtgcaaatgattaaatggggatatcaagaaggc 645 ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 31250635 agtgtttgctactatcacgacatgatagtgcaaatgatcaaatggggataccaagagggg 31250694 Query: 646 aaaactctgtttggatttggttacgatttccgccaaagtaacagg 690 ||||| | |||||||||||||| ||||||||||| ||||||||| Sbjct: 31250695 aaaacattatttggatttggttatgatttccgccagagtaacagg 31250739 Score = 121 bits (61), Expect = 1e-23 Identities = 121/141 (85%) Strand = Plus / Plus Query: 687 caggctttcggaaacacttgacaaattttctaaaaaactagagtcagtatacacagcttc 746 ||||||||| ||||||||||| | |||||| | ||| | |||||||| |||| |||||| Sbjct: 31250915 caggctttcagaaacacttgatagattttccagaaagttggagtcagtttacatagcttc 31250974 Query: 747 aggaggaaaaaagatcaatctaataacacattcaatggggggattgcttgttaaatgctt 806 |||| ||||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 31250975 cggagaaaaaaagatcaatctcattactcattcaatgggaggattgcttgtcaaatgctt 31251034 Query: 807 catgtctcttcatggtgatgt 827 |||||| || ||| ||||||| Sbjct: 31251035 catgtccctccatagtgatgt 31251055 Score = 97.6 bits (49), Expect = 2e-16 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1249 gcaaagcttccaaaatcagtgaagttctacaatatttacgggattgattatgagactgct 1308 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 31251950 gcaaagcttccaaaatcagtgaagttctacaatatttacggaactgattatgacactgcc 31252009 Query: 1309 catac 1313 ||||| Sbjct: 31252010 catac 31252014 Score = 85.7 bits (43), Expect = 6e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 876 aggtgcgcctgggtacataaatagtgctctgctgaatggaatgtcttttgtggaaggatg 935 |||||| ||||||||||||| || | |||||||||||| ||||||||||| |||||||| Sbjct: 31251375 aggtgcacctgggtacataactactagtctgctgaatggtatgtcttttgtcgaaggatg 31251434 Query: 936 gcaatccaaattcttcatttccaaatggaccatgcagcaattg 978 | | || | |||||| |||||||| |||| |||||||||||| Sbjct: 31251435 ggagtcaagattctttatttccaagtggagtatgcagcaattg 31251477 Score = 75.8 bits (38), Expect = 6e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 826 gtcttcgaaaaatatgtgaagagttggattgcaattgctgcaccatttcaaggt 879 |||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 31251158 gtcttcgagaaatacataaagagttggattgcaattgctgcaccatttcaaggt 31251211 Score = 69.9 bits (35), Expect = 4e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 1371 tcagggtaaatacatctgtgttgatggtgatggatccgttcccgcagaatcagcaaagg 1429 |||||| || |||||||||||||||||||||||||| || || | |||||||||||||| Sbjct: 31252610 tcagggcaactacatctgtgttgatggtgatggatctgtccctgtagaatcagcaaagg 31252668 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 481 aaaactgtctctgtggatgagaaaatacgcatcactgtccctgaggataggtatggattg 540 |||||||||||||| |||||||||| | || ||||||||||||||| |||||| | Sbjct: 31250147 aaaactgtctctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggacta 31250206 Query: 541 tacgccatcgacacactggaccc 563 ||||| || ||||| |||||||| Sbjct: 31250207 tacgctattgacactctggaccc 31250229 Score = 50.1 bits (25), Expect = 0.033 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1802 ggcagcatgtggaagtcagggctgttggagtca 1834 |||||||||||||||| ||||| |||||||||| Sbjct: 31253144 ggcagcatgtggaagttagggcagttggagtca 31253176 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 414 gcgcatcctcgccgccgaccac 435 |||||||||||||||||||||| Sbjct: 31187057 gcgcatcctcgccgccgaccac 31187078
>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17, complete sequence Length = 133279 Score = 178 bits (90), Expect = 5e-41 Identities = 195/230 (84%) Strand = Plus / Plus Query: 1435 ggccttgatgcagtggcgagaattggggttgctgccgaccaccgaggaatcgtgtgcgac 1494 ||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| || || Sbjct: 74382 ggcctcgatgcagtggcaagagttggggttgctgcagaccaccgaggaatcgtctgtgat 74441 Query: 1495 caccacgtgttccgcatagtccagcactggctgcacgcaggcgaacctgacccattctac 1554 | ||||||||||| ||| | ||||||||||| || || || || ||||||||||||||| Sbjct: 74442 cgtcacgtgttccggataattcagcactggctccatgccggtgagcctgacccattctac 74501 Query: 1555 gaccccctcaatgactatgtcatcctgccaaccatctacgagatcgagaagcaccacgag 1614 || |||||||| ||||| ||||| || ||||| || ||||||||||||| |||||||| Sbjct: 74502 gatcccctcaacgactacgtcatactcccaacagccttcgagatcgagaagtaccacgag 74561 Query: 1615 aaacgtggcgacgtcacgtcggtgagggaggactgggagatcatctccca 1664 |||| || || |||| ||||| || ||||||||||||||||||||||| Sbjct: 74562 aaacacggggatatcacatcggttagagaggactgggagatcatctccca 74611 Score = 151 bits (76), Expect = 1e-32 Identities = 151/176 (85%) Strand = Plus / Plus Query: 250 gtgctggaggacttgatccgggcgatcgagctgtggctgcggatcgccaaggagcaggtg 309 ||||||||||| |||||| ||||||| ||||| ||||||||||| || ||||||||||| Sbjct: 71096 gtgctggaggatttgatcagggcgattgagctctggctgcggattgctaaggagcaggta 71155 Query: 310 ccgctggtggaccccagcctcgacccggtgctgctcgtgcccggcatcggcggctctatc 369 || ||||||| || | ||| |||||||| ||||| || |||||||| |||||||| || Sbjct: 71156 cccttggtggatccaacccttgacccggttctgcttgtccccggcataggcggctcgatt 71215 Query: 370 ctcgaggccgtggacgaggccgggaacaaggagcgggtgtgggtgcgcatcctcgc 425 || || ||||| || ||||||||||| |||||| |||||||||||||||||||||| Sbjct: 71216 cttgaagccgttgatgaggccgggaagaaggagagggtgtgggtgcgcatcctcgc 71271 Score = 137 bits (69), Expect = 2e-28 Identities = 150/177 (84%) Strand = Plus / Plus Query: 985 gaatgcccatcaatatacgagttgttggctagctcaacctaccactgggaagatacacca 1044 |||||||||||||| ||||| |||||||||| ||| |||| ||| ||||||||||| ||| Sbjct: 73195 gaatgcccatcaatttacgaattgttggctaactcgaccttccaatgggaagatactcca 73254 Query: 1045 ttgctacagatctggagagagagcttagatgacaatggcaagaaaagtgccatactggag 1104 | || |||||||||||| ||| || ||| |||||||||||||||||||| | ||| Sbjct: 73255 tatctgcagatctggagacagaaattggatactaatggcaagaaaagtgccatgttagag 73314 Query: 1105 tcgtatgaaccagatgaggcaataaagatgattcaaaaagctctttccaagcatgag 1161 || ||||| |||||||| |||||||| |||||| | |||||||||||||||||||| Sbjct: 73315 tcatatgagccagatgaagcaataaaaatgattagagaagctctttccaagcatgag 73371 Score = 129 bits (65), Expect = 4e-26 Identities = 95/105 (90%) Strand = Plus / Plus Query: 586 agtgtttactactatcacgacatgatagtgcaaatgattaaatggggatatcaagaaggc 645 ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 72237 agtgtttgctactatcacgacatgatagtgcaaatgatcaaatggggataccaagagggg 72296 Query: 646 aaaactctgtttggatttggttacgatttccgccaaagtaacagg 690 ||||| | |||||||||||||| ||||||||||| ||||||||| Sbjct: 72297 aaaacattatttggatttggttatgatttccgccagagtaacagg 72341 Score = 121 bits (61), Expect = 1e-23 Identities = 121/141 (85%) Strand = Plus / Plus Query: 687 caggctttcggaaacacttgacaaattttctaaaaaactagagtcagtatacacagcttc 746 ||||||||| ||||||||||| | |||||| | ||| | |||||||| |||| |||||| Sbjct: 72517 caggctttcagaaacacttgatagattttccagaaagttggagtcagtttacatagcttc 72576 Query: 747 aggaggaaaaaagatcaatctaataacacattcaatggggggattgcttgttaaatgctt 806 |||| ||||||||||||||| || || ||||||||||| ||||||||||| |||||||| Sbjct: 72577 cggagaaaaaaagatcaatctcattactcattcaatgggaggattgcttgtcaaatgctt 72636 Query: 807 catgtctcttcatggtgatgt 827 |||||| || ||| ||||||| Sbjct: 72637 catgtccctccatagtgatgt 72657 Score = 97.6 bits (49), Expect = 2e-16 Identities = 61/65 (93%) Strand = Plus / Plus Query: 1249 gcaaagcttccaaaatcagtgaagttctacaatatttacgggattgattatgagactgct 1308 ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| Sbjct: 73552 gcaaagcttccaaaatcagtgaagttctacaatatttacggaactgattatgacactgcc 73611 Query: 1309 catac 1313 ||||| Sbjct: 73612 catac 73616 Score = 85.7 bits (43), Expect = 6e-13 Identities = 88/103 (85%) Strand = Plus / Plus Query: 876 aggtgcgcctgggtacataaatagtgctctgctgaatggaatgtcttttgtggaaggatg 935 |||||| ||||||||||||| || | |||||||||||| ||||||||||| |||||||| Sbjct: 72977 aggtgcacctgggtacataactactagtctgctgaatggtatgtcttttgtcgaaggatg 73036 Query: 936 gcaatccaaattcttcatttccaaatggaccatgcagcaattg 978 | | || | |||||| |||||||| |||| |||||||||||| Sbjct: 73037 ggagtcaagattctttatttccaagtggagtatgcagcaattg 73079 Score = 75.8 bits (38), Expect = 6e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 826 gtcttcgaaaaatatgtgaagagttggattgcaattgctgcaccatttcaaggt 879 |||||||| ||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 72760 gtcttcgagaaatacataaagagttggattgcaattgctgcaccatttcaaggt 72813 Score = 69.9 bits (35), Expect = 4e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 1371 tcagggtaaatacatctgtgttgatggtgatggatccgttcccgcagaatcagcaaagg 1429 |||||| || |||||||||||||||||||||||||| || || | |||||||||||||| Sbjct: 74212 tcagggcaactacatctgtgttgatggtgatggatctgtccctgtagaatcagcaaagg 74270 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 481 aaaactgtctctgtggatgagaaaatacgcatcactgtccctgaggataggtatggattg 540 |||||||||||||| |||||||||| | || ||||||||||||||| |||||| | Sbjct: 71749 aaaactgtctctgtcgatgagaaaacaaatattgttgtccctgaggatagatatggacta 71808 Query: 541 tacgccatcgacacactggaccc 563 ||||| || ||||| |||||||| Sbjct: 71809 tacgctattgacactctggaccc 71831 Score = 50.1 bits (25), Expect = 0.033 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1802 ggcagcatgtggaagtcagggctgttggagtca 1834 |||||||||||||||| ||||| |||||||||| Sbjct: 74746 ggcagcatgtggaagttagggcagttggagtca 74778 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 414 gcgcatcctcgccgccgaccac 435 |||||||||||||||||||||| Sbjct: 8658 gcgcatcctcgccgccgaccac 8679
>gb|AF465780.1| Lycopersicon esculentum lecithine cholesterol acyltransferase-like protein mRNA, complete cds Length = 1853 Score = 87.7 bits (44), Expect = 2e-13 Identities = 80/92 (86%) Strand = Plus / Plus Query: 796 gttaaatgcttcatgtctcttcatggtgatgtcttcgaaaaatatgtgaagagttggatt 855 |||||||| |||||| |||| || ||||| | || |||||||||||||||| ||||||| Sbjct: 580 gttaaatgtttcatggctctccacagtgatatttttgaaaaatatgtgaagaattggatt 639 Query: 856 gcaattgctgcaccatttcaaggtgcgcctgg 887 ||||| ||||||||||| |||||||| ||||| Sbjct: 640 gcaatagctgcaccattccaaggtgctcctgg 671 Score = 54.0 bits (27), Expect = 0.002 Identities = 63/75 (84%) Strand = Plus / Plus Query: 628 tggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaac 687 ||||| || |||||||| ||||| || ||||||||||| || |||||||| || || ||| Sbjct: 412 tggggttaccaagaaggaaaaacactatttggatttggctatgatttccggcagagcaac 471 Query: 688 aggctttcggaaaca 702 |||||| ||||||| Sbjct: 472 aggcttcaggaaaca 486
>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51 Length = 197114 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 169331 atggggatttgaagaagggaaaaccctttttggttttggttatgatttccgccaaagcaa 169272 Query: 687 cagg 690 |||| Sbjct: 169271 cagg 169268
>emb|AL024486.1|ATT16H5 Arabidopsis thaliana DNA chromosome 4, BAC clone T16H5 (ESSAII project) Length = 95417 Score = 63.9 bits (32), Expect = 2e-06 Identities = 56/64 (87%) Strand = Plus / Minus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 89249 atggggatttgaagaagggaaaaccctttttggttttggttatgatttccgccaaagcaa 89190 Query: 687 cagg 690 |||| Sbjct: 89189 cagg 89186
>ref|NM_118106.2| Arabidopsis thaliana phosphatidylcholine-sterol O-acyltransferase (AT4G19860) mRNA, complete cds Length = 1854 Score = 61.9 bits (31), Expect = 9e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 496 atggggatttgaagaagggaaaaccctttttggttttggttatgatttccgccaaagcaa 555 Query: 687 cag 689 ||| Sbjct: 556 cag 558
>gb|AF421149.1| Arabidopsis thaliana lecithine cholesterol acyltransferase-like protein (At4g19860) mRNA, complete cds Length = 1608 Score = 61.9 bits (31), Expect = 9e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 393 atggggatttgaagaagggaaaaccctttttggttttggttatgatttccgccaaagcaa 452 Query: 687 cag 689 ||| Sbjct: 453 cag 455
>gb|BT022028.1| Arabidopsis thaliana At4g19860 gene, complete cds Length = 1716 Score = 61.9 bits (31), Expect = 9e-06 Identities = 55/63 (87%) Strand = Plus / Plus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 469 atggggatttgaagaagggaaaaccctttttggttttggttatgatttccgccaaagcaa 528 Query: 687 cag 689 ||| Sbjct: 529 cag 531
>emb|BX826415.1|CNS0A4BM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB24ZE02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1838 Score = 60.0 bits (30), Expect = 3e-05 Identities = 54/62 (87%) Strand = Plus / Plus Query: 627 atggggatatcaagaaggcaaaactctgtttggatttggttacgatttccgccaaagtaa 686 |||||||| | ||||||| ||||| || ||||| |||||||| |||||||||||||| || Sbjct: 459 atggggatttgaagaagggaaaaccctttttggttttggttaagatttccgccaaagcaa 518 Query: 687 ca 688 || Sbjct: 519 ca 520
>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0065A15, complete sequence Length = 168806 Score = 48.1 bits (24), Expect = 0.13 Identities = 33/36 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacagg 690 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 154528 tttggatatggttatgattttcgccaaagtaacagg 154563
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 48.1 bits (24), Expect = 0.13 Identities = 33/36 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacagg 690 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 19671453 tttggatatggttatgattttcgccaaagtaacagg 19671488
>dbj|AP006756.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0450E05 Length = 176553 Score = 48.1 bits (24), Expect = 0.13 Identities = 33/36 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacagg 690 ||||||| |||||| ||||| ||||||||||||||| Sbjct: 17139 tttggatatggttatgattttcgccaaagtaacagg 17174
>ref|NM_001070183.1| Oryza sativa (japonica cultivar-group) Os09g0513100 (Os09g0513100) mRNA, complete cds Length = 2300 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacag 689 ||||||| |||||| ||||| |||||||||||||| Sbjct: 560 tttggatatggttatgattttcgccaaagtaacag 594
>dbj|AK227253.1| Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL11-03-C04 Length = 1837 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacag 689 ||||| |||||||| |||||||||||||| ||||| Sbjct: 526 tttggttttggttatgatttccgccaaagcaacag 560
>gb|AF468223.1| Nicotiana tabacum phospholipase A1 mRNA, complete cds Length = 1691 Score = 46.1 bits (23), Expect = 0.51 Identities = 44/51 (86%) Strand = Plus / Plus Query: 961 tggaccatgcagcaattgttaattgaatgcccatcaatatacgagttgttg 1011 ||||| ||||| |||||||| |||| ||||||||||| |||||| ||||| Sbjct: 781 tggacaatgcatcaattgttggttgagtgcccatcaatctacgagatgttg 831 Score = 44.1 bits (22), Expect = 2.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 1396 ggtgatggatccgttcccgcagaatcagcaaaggcgga 1433 ||||||||| | ||||| || ||||||||||||||||| Sbjct: 1213 ggtgatggaactgttccagctgaatcagcaaaggcgga 1250
>gb|AC149576.3| Medicago truncatula chromosome 2 BAC clone mte1-17c12, complete sequence Length = 75005 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 910 aatggaatgtcttttgtggaaggatgg 936 ||||||||||| ||||||||||||||| Sbjct: 39993 aatggaatgtcctttgtggaaggatgg 40019 Score = 44.1 bits (22), Expect = 2.0 Identities = 34/38 (89%) Strand = Plus / Plus Query: 835 aaatatgtgaagagttggattgcaattgctgcaccatt 872 |||||||| |||| ||||||||||||| ||||||||| Sbjct: 39106 aaatatgttaagaattggattgcaatttgtgcaccatt 39143
>gb|AC127586.4| Mus musculus BAC clone RP24-142A16 from chromosome 7, complete sequence Length = 164692 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1950 aatatggtgtactgcttgtaaat 1972 ||||||||||||||||||||||| Sbjct: 38273 aatatggtgtactgcttgtaaat 38251
>gb|AC159005.3| Mus musculus BAC clone RP23-67F4 from chromosome 7, complete sequence Length = 230018 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1950 aatatggtgtactgcttgtaaat 1972 ||||||||||||||||||||||| Sbjct: 165656 aatatggtgtactgcttgtaaat 165634
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 339 gctgctcgtgcccggcatcggcg 361 ||||||||||||||||||||||| Sbjct: 1350014 gctgctcgtgcccggcatcggcg 1349992
>dbj|AK120151.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013029N13, full insert sequence Length = 2302 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Plus Query: 655 tttggatttggttacgatttccgccaaagtaacag 689 ||||||| |||||| ||||| |||||||||||||| Sbjct: 561 tttggatatggttatgattttcgccaaagtaacag 595
>gb|AC102176.8| Mus musculus chromosome 15, clone RP23-480E14, complete sequence Length = 181577 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 733 gtatacacagcttcaggaggaa 754 |||||||||||||||||||||| Sbjct: 103402 gtatacacagcttcaggaggaa 103381
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 ccgccgacgccccgccgctccg 109 |||||||||||||||||||||| Sbjct: 29332998 ccgccgacgccccgccgctccg 29333019
>gb|AC160099.1| Unidentified bacterium clone zdt-45e5, complete sequence Length = 35743 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 698 aaacacttgacaaattttctaaaaaa 723 |||||||||||| ||||||||||||| Sbjct: 9865 aaacacttgacatattttctaaaaaa 9890
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 88 ccgccgacgccccgccgctccg 109 |||||||||||||||||||||| Sbjct: 121687 ccgccgacgccccgccgctccg 121708
>gb|DQ771786.1| Synthetic construct Yersinia pestis clone FLH0136588.01X rbsA gene, complete sequence Length = 1539 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1196 ttaatgaggatatattaatat 1216 ||||||||||||||||||||| Sbjct: 1132 ttaatgaggatatattaatat 1112
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1751 tgctggacgaggcgcaggcca 1771 ||||||||||||||||||||| Sbjct: 3333422 tgctggacgaggcgcaggcca 3333442
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1196 ttaatgaggatatattaatat 1216 ||||||||||||||||||||| Sbjct: 3576189 ttaatgaggatatattaatat 3576169
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1585 accatctacgagatcgagaag 1605 ||||||||||||||||||||| Sbjct: 3798759 accatctacgagatcgagaag 3798739
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 42.1 bits (21), Expect = 8.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1844 gctagctacggggcctattgcagtacttaagta 1876 ||||||||||| |||| ||||||||| |||||| Sbjct: 119310 gctagctacggtgccttttgcagtacgtaagta 119342
>gb|AC108875.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1123_C08, complete sequence Length = 132017 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1250 caaagcttccaaaatcagtga 1270 ||||||||||||||||||||| Sbjct: 4979 caaagcttccaaaatcagtga 4999
>gb|AY581127.1| Azorhizobium caulinodans strain ORS571 hydrogenase gene cluster, complete sequence Length = 21000 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 371 tcgaggccgtggacgaggccg 391 ||||||||||||||||||||| Sbjct: 8957 tcgaggccgtggacgaggccg 8977
>gb|AC130607.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0017D10, complete sequence Length = 149870 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1250 caaagcttccaaaatcagtga 1270 ||||||||||||||||||||| Sbjct: 114643 caaagcttccaaaatcagtga 114663
>gb|AC111122.13| Mus musculus chromosome 7, clone RP23-230L8, complete sequence Length = 175772 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 108761 gaaggaggaaggaaataatca 108741
>gb|AC147251.3| Mus musculus BAC clone RP24-114L16 from chromosome 18, complete sequence Length = 177962 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 164697 gaaggaggaaggaaataatca 164717
>gb|AC123950.3| Mus musculus BAC clone RP23-162I9 from chromosome 18, complete sequence Length = 181095 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 157709 gaaggaggaaggaaataatca 157689
>gb|AC164313.3| Mus musculus BAC clone RP23-24F12 from chromosome 3, complete sequence Length = 196368 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1124 caataaagatgattcaaaaag 1144 ||||||||||||||||||||| Sbjct: 112141 caataaagatgattcaaaaag 112121
>gb|AC164662.6| Mus musculus 10 BAC RP24-279D11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154482 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1260 aaaatcagtgaagttctacaa 1280 ||||||||||||||||||||| Sbjct: 112195 aaaatcagtgaagttctacaa 112215
>gb|AC141561.5| Mus musculus BAC clone RP23-457C15 from chromosome 3, complete sequence Length = 169547 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1124 caataaagatgattcaaaaag 1144 ||||||||||||||||||||| Sbjct: 67763 caataaagatgattcaaaaag 67743
>gb|AC092808.2| Homo sapiens chromosome 1 clone RP11-360C2, complete sequence Length = 151426 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 688 aggctttcggaaacacttgac 708 ||||||||||||||||||||| Sbjct: 124069 aggctttcggaaacacttgac 124049
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1747 ggcctgctggacgaggcgcag 1767 ||||||||||||||||||||| Sbjct: 2864546 ggcctgctggacgaggcgcag 2864566
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 gggtgcgcatcctcgccgccg 430 ||||||||||||||||||||| Sbjct: 2669088 gggtgcgcatcctcgccgccg 2669068
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 8.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 1844 gctagctacggggcctattgcagtacttaagta 1876 ||||||||||| |||| ||||||||| |||||| Sbjct: 6994052 gctagctacggtgccttttgcagtacgtaagta 6994084
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1250 caaagcttccaaaatcagtga 1270 ||||||||||||||||||||| Sbjct: 20116318 caaagcttccaaaatcagtga 20116338
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1658 tctcccacactgacggcgacg 1678 ||||||||||||||||||||| Sbjct: 9562675 tctcccacactgacggcgacg 9562655
>emb|AL392111.12| Human DNA sequence from clone RP11-487I5 on chromosome 10 Contains the DUSP13 gene for dual specificity phosphatase 13 (BEDP, TMDP, FLJ32450), the gene for a novel protein (FLJ25082), the 5' end fo the VDAC2 gene for voltage-dependent anion channel 2, a peptidylprolyl isomerase A (cyclophilin A)(PPIA)(CYPA, CYPH) pseudogene, a ribosomal protein S26 (RPS26) pseudogene and two CpG islands, complete sequence Length = 159365 Score = 42.1 bits (21), Expect = 8.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 cccggccacccgccgacgccccgcc 103 ||||||||| ||||||||||||||| Sbjct: 141354 cccggccacgcgccgacgccccgcc 141378
>emb|AL360004.22| Human DNA sequence from clone RP11-88G17 on chromosome 9 Contains the 3' end of a novel gene, the 3' end of the GPR107 gene for G protein-coupled receptor 107 (LUSTR1), the FREQ gene for frequenin homolog (Drosophila) (neuronal calcium sensor 1), the 5' end of a novel pseudogene and two CpG islands, complete sequence Length = 182211 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 tttgggggcgggatttgggcg 210 ||||||||||||||||||||| Sbjct: 178021 tttgggggcgggatttgggcg 178001
>emb|AL359012.7| Human DNA sequence from clone RP11-339I10 on chromosome 13 Contains ESTs, STSs and GSSs, complete sequence Length = 176446 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1151 ccaagcatgagattatctctg 1171 ||||||||||||||||||||| Sbjct: 135396 ccaagcatgagattatctctg 135376
>emb|AL137178.7| Human DNA sequence from clone RP11-120K22 on chromosome 6 Contains the 5' end of the BMP5 gene for bone morphogenetic protein 5, complete sequence Length = 112659 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 754 aaaaagatcaatctaataaca 774 ||||||||||||||||||||| Sbjct: 17287 aaaaagatcaatctaataaca 17267
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 8.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 334 ccggtgctgctcgtgcccggcatcg 358 |||||||||||||||| |||||||| Sbjct: 4881019 ccggtgctgctcgtgcacggcatcg 4880995
>gb|AC114802.5| Homo sapiens BAC clone RP11-790N8 from 2, complete sequence Length = 154814 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1176 aaatcacattcctctgcctct 1196 ||||||||||||||||||||| Sbjct: 10713 aaatcacattcctctgcctct 10733
>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0693E08 Length = 157969 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1658 tctcccacactgacggcgacg 1678 ||||||||||||||||||||| Sbjct: 26893 tctcccacactgacggcgacg 26873
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 aggagcaggtgccgctggtgg 319 ||||||||||||||||||||| Sbjct: 505897 aggagcaggtgccgctggtgg 505877
>gb|AC084458.1|AC084458 Caenorhabditis briggsae cosmid CB032H19, complete sequence Length = 65241 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 ttgggggcgggatttgggcgg 211 ||||||||||||||||||||| Sbjct: 58572 ttgggggcgggatttgggcgg 58592
>emb|CR478323.2| Mouse DNA sequence from clone WI1-1055K5 on chromosome X, complete sequence Length = 35468 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 12796 gaaggaggaaggaaataatca 12816
>gb|AC105957.13| Mus musculus chromosome 18, clone RP24-303O20, complete sequence Length = 167570 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 38469 gaaggaggaaggaaataatca 38449
>gb|AC153496.4| Mus musculus 10 BAC RP23-373D1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 149839 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1260 aaaatcagtgaagttctacaa 1280 ||||||||||||||||||||| Sbjct: 18930 aaaatcagtgaagttctacaa 18910
>emb|BX293555.7| Mouse DNA sequence from clone RP23-202M10 on chromosome 2, complete sequence Length = 192154 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 697 gaaacacttgacaaattttct 717 ||||||||||||||||||||| Sbjct: 86328 gaaacacttgacaaattttct 86348
>emb|AL772399.9| Mouse DNA sequence from clone RP23-220L1 on chromosome 4, complete sequence Length = 103488 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2005 ttgagcaggaaggaggaagga 2025 ||||||||||||||||||||| Sbjct: 53519 ttgagcaggaaggaggaagga 53499
>gb|U56817.1|BJU56817 Bradyrhizobium japonicum aconitase (acnA) gene, complete cds Length = 2892 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 299 aggagcaggtgccgctggtgg 319 ||||||||||||||||||||| Sbjct: 2445 aggagcaggtgccgctggtgg 2465
>gb|AC154672.2| Mus musculus BAC clone RP24-297H12 from 14, complete sequence Length = 163733 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 47021 gaaggaggaaggaaataatca 47001
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 cacccgccgacgccccgccgc 105 ||||||||||||||||||||| Sbjct: 87629 cacccgccgacgccccgccgc 87609
>emb|AL805976.12| Mouse DNA sequence from clone RP23-34H1 on chromosome 4, complete sequence Length = 192098 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 100898 gaaggaggaaggaaataatca 100878
>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete sequence Length = 196773 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 175057 gaaggaggaaggaaataatca 175037
>gb|AC117715.10| Mus musculus chromosome 7, clone RP23-62M19, complete sequence Length = 234594 Score = 42.1 bits (21), Expect = 8.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2013 gaaggaggaaggaaataatca 2033 ||||||||||||||||||||| Sbjct: 221277 gaaggaggaaggaaataatca 221297 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 344,497,696 Number of extensions: 17924012 Number of successful extensions: 100618 Number of sequences better than 10.0: 67 Number of HSP's gapped: 100614 Number of HSP's successfully gapped: 105 Length of query: 2085 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2062 Effective length of database: 18,503,978,556 Effective search space: 38155203782472 Effective search space used: 38155203782472 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
