ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf63a02 |
|---|---|
| Clone Library Name | barley_pub |
>Q9DC63:FBX3_MOUSE F-box only protein 3 - Mus musculus (Mouse)| Length = 480 Score = 37.4 bits (85), Expect = 0.20 Identities = 17/45 (37%), Positives = 25/45 (55%) Frame = +1 Query: 601 EQGTHVFPEAESHALHVEKHTQDDSVDMEQRGNSDADEDATEVGD 735 E G + E E A E+ DDS DM++ SDADE+ ++ G+ Sbjct: 414 EMGPDEYEEMEEEAEEEEEEENDDSADMDESDESDADENESDEGE 458
>Q96G74:OTUD5_HUMAN OTU domain-containing protein 5 - Homo sapiens (Human)| Length = 571 Score = 36.6 bits (83), Expect = 0.33 Identities = 29/77 (37%), Positives = 31/77 (40%) Frame = -2 Query: 256 GCGDAVRPSGDCSLAPRAKMEVIRRSLFNQPGALRHGELPFPSAVVRGARAESWSPPGRR 77 G GD R SG PRA + L PGAL L P V G R + SPP Sbjct: 46 GGGDRDRDSGVVGARPRASPPP-QGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCG 104 Query: 76 GKGWASF*ETGGPGRVL 26 G G GGPG L Sbjct: 105 GPGGPG----GGPGDAL 117
>Q2YDU3:OTUD5_RAT OTU domain-containing protein 5 - Rattus norvegicus (Rat)| Length = 566 Score = 35.0 bits (79), Expect = 0.97 Identities = 28/77 (36%), Positives = 31/77 (40%) Frame = -2 Query: 256 GCGDAVRPSGDCSLAPRAKMEVIRRSLFNQPGALRHGELPFPSAVVRGARAESWSPPGRR 77 G G+ R SG PRA + L PGAL L P V G R + SPP Sbjct: 46 GGGERDRDSGVVGARPRASPPP-QGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCG 104 Query: 76 GKGWASF*ETGGPGRVL 26 G G GGPG L Sbjct: 105 GPGGPG----GGPGDAL 117
>Q3U2S4:OTUD5_MOUSE OTU domain-containing protein 5 - Mus musculus (Mouse)| Length = 566 Score = 35.0 bits (79), Expect = 0.97 Identities = 28/77 (36%), Positives = 31/77 (40%) Frame = -2 Query: 256 GCGDAVRPSGDCSLAPRAKMEVIRRSLFNQPGALRHGELPFPSAVVRGARAESWSPPGRR 77 G G+ R SG PRA + L PGAL L P V G R + SPP Sbjct: 46 GGGERDRDSGVVGARPRASPPP-QGPLPGPPGALHRWALAVPPGAVAGPRPQQASPPPCG 104 Query: 76 GKGWASF*ETGGPGRVL 26 G G GGPG L Sbjct: 105 GPGGPG----GGPGDAL 117
>P65131:IF2_MYCTU Translation initiation factor IF-2 - Mycobacterium tuberculosis| Length = 900 Score = 34.7 bits (78), Expect = 1.3 Identities = 21/50 (42%), Positives = 21/50 (42%) Frame = +3 Query: 18 RPSRTRPGPPVSQNDAHPFPLRPGGLHDSARAPRTTADGKGSSPCRSAPG 167 RP RPG P P RPGG AR PR A G P APG Sbjct: 174 RPGTARPGVPRPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRP--GAPG 221
>P65132:IF2_MYCBO Translation initiation factor IF-2 - Mycobacterium bovis| Length = 900 Score = 34.7 bits (78), Expect = 1.3 Identities = 21/50 (42%), Positives = 21/50 (42%) Frame = +3 Query: 18 RPSRTRPGPPVSQNDAHPFPLRPGGLHDSARAPRTTADGKGSSPCRSAPG 167 RP RPG P P RPGG AR PR A G P APG Sbjct: 174 RPGTARPGVPRPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRP--GAPG 221
>Q9M4U5:HDT2_MAIZE Histone deacetylase HDT2 - Zea mays (Maize)| Length = 303 Score = 33.9 bits (76), Expect = 2.2 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +1 Query: 571 GSCDTTEVMHEQGTHVFPEAESHALHVEKHTQDDSVDMEQRGNSDADEDATEVGD 735 G D E Q V A +L +EK ++DDS D ++ + D+DED ++ D Sbjct: 121 GKADGKEEQKNQEKAVAATASKSSLGLEKKSKDDSDDSDEDESDDSDEDDSDDSD 175
>O88703:HCN2_MOUSE Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 - Mus musculus (Mouse) Length = 863 Score = 33.1 bits (74), Expect = 3.7 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Frame = +3 Query: 21 PSRTRPGPPVSQNDAHPFPLRPGGLHDSARAPRTTADGKGSSPCRSAPG*LKSERRITSI 200 P PGPP + A P S RAPRT+ G SP L + R + Sbjct: 739 PPAASPGPPAASPPAAP---------SSPRAPRTSPYGVPGSPATRVGPALPARRLSRAS 789 Query: 201 FALGASEQS-PLGLTASPQPQGAVHP 275 L AS+ S P G+ A P P + P Sbjct: 790 RPLSASQPSLPHGVPA-PSPAASARP 814
>A1RSA3:RFCL_PYRIL Replication factor C large subunit - Pyrobaculum islandicum (strain| DSM 4184 / JCM 9189) Length = 423 Score = 32.7 bits (73), Expect = 4.8 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Frame = -2 Query: 529 LLP-SLHLTVQRSAQNTNQPKLPPQVKVQLPSHLI*LIPK*QPRNHRIRKSHPALQVDLV 353 LLP +L L++ +Q N+P+LPP +K P L+ L ++ R+ AL L Sbjct: 321 LLPYALELSLGGISQVKNKPRLPPFIKYGFPQRLLLL-----AKSKEARRRREALVEYLA 375 Query: 352 QRGGLRFLHLQKSWSCSEMSSTLAS 278 Q LH+ KS+ SE+ L++ Sbjct: 376 QN-----LHVSKSFVKSELIYVLSA 395
>P31277:HXD11_HUMAN Homeobox protein Hox-D11 - Homo sapiens (Human)| Length = 338 Score = 32.7 bits (73), Expect = 4.8 Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Frame = +3 Query: 36 PGPPVS--QNDAHPFPLRPGGLHDSARAPRTTADGKGSSPC-RSAPG*LKSERRITSIFA 206 PGPP + Q HP P G D PRT A G G SPC ++ PG SE + + Sbjct: 186 PGPPFAGPQPRRHPRRHSPMGAADKGD-PRTGAGGGGGSPCTKATPG---SEPK-GAAEG 240 Query: 207 LGASEQSPLGLTASPQPQGAVHP 275 G + P G + + AV P Sbjct: 241 SGGDGEGPPGEAGAEKSSSAVAP 263
>Q10282:GBB_SCHPO Guanine nucleotide-binding protein subunit beta -| Schizosaccharomyces pombe (Fission yeast) Length = 305 Score = 32.7 bits (73), Expect = 4.8 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = -1 Query: 650 TCKAWDSASGKTWVPCSCMTSVVSQEPSIGSLRLSSNACVIAPQS 516 TC+ WDS S KT +TS+ E I SL L+S+ ++A S Sbjct: 255 TCEVWDSISSKT------ITSLTGHENRISSLALTSDGTMLATGS 293
>Q02308:HLES_DROME Protein hairless - Drosophila melanogaster (Fruit fly)| Length = 1077 Score = 32.3 bits (72), Expect = 6.3 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%) Frame = +1 Query: 559 EPMEGSCDTTEVMHEQGTHVFPEAESHAL----HVEKHTQDDSVDMEQRGNSDADED-AT 723 + ++G D + E V ++ES VE +D++VD+E + N+ DE+ T Sbjct: 412 DTIKGEDDAERLEKEPKKAVSDDSESKEASPGQQVEPQPKDETVDVEMKMNTSEDEEPMT 471 Query: 724 EVGDVTNVISG 756 E+ +TN ++G Sbjct: 472 ELPRITNAVNG 482
>Q9JKA9:HCN2_RAT Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 - Rattus norvegicus (Rat) Length = 863 Score = 32.3 bits (72), Expect = 6.3 Identities = 25/85 (29%), Positives = 32/85 (37%) Frame = +3 Query: 21 PSRTRPGPPVSQNDAHPFPLRPGGLHDSARAPRTTADGKGSSPCRSAPG*LKSERRITSI 200 P PGPP + A P S RAPRT+ G SP L + R + Sbjct: 739 PPAASPGPPAASPPAAP---------SSPRAPRTSPYGVPGSPATRVGPALPARRLSRAS 789 Query: 201 FALGASEQSPLGLTASPQPQGAVHP 275 L AS+ S +P P + P Sbjct: 790 RPLSASQPSLPHGAPAPSPAASARP 814 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 288,629,809 Number of extensions: 6136713 Number of successful extensions: 16958 Number of sequences better than 10.0: 13 Number of HSP's gapped: 16932 Number of HSP's successfully gapped: 13 Length of query: 571 Length of database: 100,686,439 Length adjustment: 119 Effective length of query: 452 Effective length of database: 68,045,334 Effective search space: 30756490968 Effective search space used: 30756490968 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
