ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf60h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q03218:MMT1_YEAST Mitochondrial metal transporter 1, mitochondri... 33 2.4
2Q83C15:SYFB_COXBU Phenylalanyl-tRNA synthetase beta chain - Coxi... 32 4.2
3P41000:SCP3_SCHPO Protein scp3 - Schizosaccharomyces pombe (Fiss... 31 7.1
4Q5ZIX8:JHD2A_CHICK JmjC domain-containing histone demethylation ... 31 9.3

>Q03218:MMT1_YEAST Mitochondrial metal transporter 1, mitochondrial precursor -|
           Saccharomyces cerevisiae (Baker's yeast)
          Length = 510
 Score = 32.7 bits (73), Expect = 2.4
 Identities = 23/66 (34%), Positives = 30/66 (45%)
 Frame = -3

Query: 985 RKSSYLKLEQRFALNLEVH*TDTRETQFDILTSISSGTIKSDKDSSLV*SQKKHSLTSHV 806
           +   Y KL + F  +  VH  ++   Q DI   IS GTI+  K S    + K  SL  H 
Sbjct: 74  KNPQYQKLAEAFNSHDHVHLRESETEQNDI---ISLGTIRDYKSSKCEQADKPSSLNLHS 130

Query: 805 STHFSG 788
            TH  G
Sbjct: 131 HTHSHG 136



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>Q83C15:SYFB_COXBU Phenylalanyl-tRNA synthetase beta chain - Coxiella burnetii|
          Length = 792

 Score = 32.0 bits (71), Expect = 4.2
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
 Frame = +3

Query: 489 LGSDNGY-------FVN--ITVLNNVQKTNERLSVPVTKAEFAVMRTALSFALPHIMGWD 641
           L +D GY       FVN  +  L N + T+  LS P+T AE  VMRT+L   L  ++ ++
Sbjct: 500 LMTDRGYHEAVTYSFVNDELQTLLNPEVTSIALSNPLT-AEMNVMRTSLWPGLIQVLKYN 558

Query: 642 QALSTH 659
           QA  TH
Sbjct: 559 QARQTH 564



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>P41000:SCP3_SCHPO Protein scp3 - Schizosaccharomyces pombe (Fission yeast)|
          Length = 583

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
 Frame = +3

Query: 855 SLSDFIVPEEIEVRMSNCVSLVSVQCTSRFRANLCSSLR------YDDLRGCP 995
           SL + + PEE+E +MS+    VS    SRF + + S+L       Y+   G P
Sbjct: 439 SLQELLTPEELERKMSHGDEAVSSSSASRFMSKVSSNLNSGNPTPYNSYNGTP 491



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>Q5ZIX8:JHD2A_CHICK JmjC domain-containing histone demethylation protein 2A - Gallus|
           gallus (Chicken)
          Length = 1325

 Score = 30.8 bits (68), Expect = 9.3
 Identities = 20/66 (30%), Positives = 35/66 (53%)
 Frame = +3

Query: 426 HDPSMKSSHEGQVKKSLSITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTA 605
           H+P +K +   +   S++ +P  S   +  NIT  N  ++  E+L VP++K E   ++T 
Sbjct: 803 HEPPVKPAAGSKQTASVTTSPSLS---WLSNITSGNVNKENKEKLLVPISKNENKALQTL 859

Query: 606 LSFALP 623
            S A P
Sbjct: 860 PSLAKP 865


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 166,422,770
Number of extensions: 3521873
Number of successful extensions: 7977
Number of sequences better than 10.0: 4
Number of HSP's gapped: 7973
Number of HSP's successfully gapped: 4
Length of query: 340
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 226
Effective length of database: 69,416,809
Effective search space: 15688198834
Effective search space used: 15688198834
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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