| Clone Name | FLbaf60h16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT828510.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence Length = 1097 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 251 caaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttctt 310 |||||| ||||||||||||||||| || |||| |||||| || || |||||||| || || Sbjct: 269 caaactggaatctggaggatctcgtgtgaacaaaaatggatcggtgatgttgactttttt 328 Query: 311 cccggcagttggacaaaggaagtacgactatacgaagaaacagctctttgctctgtcacc 370 |||||| || ||||||||||| || || ||| | |||||||||||||||||||||||||| Sbjct: 329 cccggctgtgggacaaaggaaatatgattattcaaagaaacagctctttgctctgtcacc 388 Query: 371 tactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaatttttccatga 430 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 389 tactgaagtcggaagcttgataagtcttgggcctgctgaatcttgtgaatttttccatga 448 Query: 431 tccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcgatcactcctct 490 ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct: 449 tccctccatgaaatcaagtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctct 508 Query: 491 tggcagtgataatggatacttcgttaacataactgttctgaataacgtgcagaagacaaa 550 |||| ||| | ||||||||| | || |||||||||||||| ||| |||||||||||| Sbjct: 509 cggcaatgacagtggatactttctgaatataactgttctgaacaacttgcagaagacaac 568 Query: 551 tgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgag 610 ||| || |||||| |||| | |||||||||| ||| ||||||||||||| |||||||| Sbjct: 569 tgagcgactttcactcccaatctcaaaagctgagtttacagttatgcgcacagcattgag 628 Query: 611 ttttgcattgccgcacatcatgggctgggaccaggcc 647 ||| ||||||||||||||| ||||||||||||||||| Sbjct: 629 tttcgcattgccgcacatcttgggctgggaccaggcc 665 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 201 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 241 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 64 cctccacctccaggggagtcactggcctcaaagatgctctctggagcggttcattgacat 123 ||||| |||||||| ||||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct: 88 cctcctcctccaggagagtcactgacctaaaggatgctctctggagtggttctttgactt 147 Query: 124 tcaagcatgcactttc 139 || | ||||| ||||| Sbjct: 148 tccaacatgctctttc 163 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 694 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 753
>ref|NM_001052491.1| Oryza sativa (japonica cultivar-group) Os02g0158400 (Os02g0158400) mRNA, complete cds Length = 1149 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 251 caaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttctt 310 |||||| ||||||||||||||||| || |||| |||||| || || |||||||| || || Sbjct: 264 caaactggaatctggaggatctcgtgtgaacaaaaatggatcggtgatgttgactttttt 323 Query: 311 cccggcagttggacaaaggaagtacgactatacgaagaaacagctctttgctctgtcacc 370 |||||| || ||||||||||| || || ||| | |||||||||||||||||||||||||| Sbjct: 324 cccggctgtgggacaaaggaaatatgattattcaaagaaacagctctttgctctgtcacc 383 Query: 371 tactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaatttttccatga 430 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 384 tactgaagtcggaagcttgataagtcttgggcctgctgaatcttgtgaatttttccatga 443 Query: 431 tccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcgatcactcctct 490 ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct: 444 tccctccatgaaatcaagtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctct 503 Query: 491 tggcagtgataatggatacttcgttaacataactgttctgaataacgtgcagaagacaaa 550 |||| ||| | ||||||||| | || |||||||||||||| ||| |||||||||||| Sbjct: 504 cggcaatgacagtggatactttctgaatataactgttctgaacaacttgcagaagacaac 563 Query: 551 tgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgag 610 ||| || |||||| |||| | |||||||||| ||| ||||||||||||| |||||||| Sbjct: 564 tgagcgactttcactcccaatctcaaaagctgagtttacagttatgcgcacagcattgag 623 Query: 611 ttttgcattgccgcacatcatgggctgggaccaggcc 647 ||| ||||||||||||||| ||||||||||||||||| Sbjct: 624 tttcgcattgccgcacatcttgggctgggaccaggcc 660 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 196 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 236 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 64 cctccacctccaggggagtcactggcctcaaagatgctctctggagcggttcattgacat 123 ||||| |||||||| ||||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct: 83 cctcctcctccaggagagtcactgacctaaaggatgctctctggagtggttctttgactt 142 Query: 124 tcaagcatgcactttc 139 || | ||||| ||||| Sbjct: 143 tccaacatgctctttc 158 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 689 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 748
>dbj|AK104768.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A03, full insert sequence Length = 1149 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 251 caaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttctt 310 |||||| ||||||||||||||||| || |||| |||||| || || |||||||| || || Sbjct: 264 caaactggaatctggaggatctcgtgtgaacaaaaatggatcggtgatgttgactttttt 323 Query: 311 cccggcagttggacaaaggaagtacgactatacgaagaaacagctctttgctctgtcacc 370 |||||| || ||||||||||| || || ||| | |||||||||||||||||||||||||| Sbjct: 324 cccggctgtgggacaaaggaaatatgattattcaaagaaacagctctttgctctgtcacc 383 Query: 371 tactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaatttttccatga 430 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 384 tactgaagtcggaagcttgataagtcttgggcctgctgaatcttgtgaatttttccatga 443 Query: 431 tccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcgatcactcctct 490 ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct: 444 tccctccatgaaatcaagtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctct 503 Query: 491 tggcagtgataatggatacttcgttaacataactgttctgaataacgtgcagaagacaaa 550 |||| ||| | ||||||||| | || |||||||||||||| ||| |||||||||||| Sbjct: 504 cggcaatgacagtggatactttctgaatataactgttctgaacaacttgcagaagacaac 563 Query: 551 tgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgag 610 ||| || |||||| |||| | |||||||||| ||| ||||||||||||| |||||||| Sbjct: 564 tgagcgactttcactcccaatctcaaaagctgagtttacagttatgcgcacagcattgag 623 Query: 611 ttttgcattgccgcacatcatgggctgggaccaggcc 647 ||| ||||||||||||||| ||||||||||||||||| Sbjct: 624 tttcgcattgccgcacatcttgggctgggaccaggcc 660 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 196 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 236 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 64 cctccacctccaggggagtcactggcctcaaagatgctctctggagcggttcattgacat 123 ||||| |||||||| ||||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct: 83 cctcctcctccaggagagtcactgacctaaaggatgctctctggagtggttctttgactt 142 Query: 124 tcaagcatgcactttc 139 || | ||||| ||||| Sbjct: 143 tccaacatgctctttc 158 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 689 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 748
>dbj|AK099479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025B22, full insert sequence Length = 1142 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 251 caaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttctt 310 |||||| ||||||||||||||||| || |||| |||||| || || |||||||| || || Sbjct: 273 caaactggaatctggaggatctcgtgtgaacaaaaatggatcggtgatgttgactttttt 332 Query: 311 cccggcagttggacaaaggaagtacgactatacgaagaaacagctctttgctctgtcacc 370 |||||| || ||||||||||| || || ||| | |||||||||||||||||||||||||| Sbjct: 333 cccggctgtgggacaaaggaaatatgattattcaaagaaacagctctttgctctgtcacc 392 Query: 371 tactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaatttttccatga 430 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 393 tactgaagtcggaagcttgataagtcttgggcctgctgaatcttgtgaatttttccatga 452 Query: 431 tccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcgatcactcctct 490 ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct: 453 tccctccatgaaatcaagtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctct 512 Query: 491 tggcagtgataatggatacttcgttaacataactgttctgaataacgtgcagaagacaaa 550 |||| ||| | ||||||||| | || |||||||||||||| ||| |||||||||||| Sbjct: 513 cggcaatgacagtggatactttctgaatataactgttctgaacaacttgcagaagacaac 572 Query: 551 tgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgag 610 ||| || |||||| |||| | |||||||||| ||| ||||||||||||| |||||||| Sbjct: 573 tgagcgactttcactcccaatctcaaaagctgagtttacagttatgcgcacagcattgag 632 Query: 611 ttttgcattgccgcacatcatgggctgggaccaggcc 647 ||| ||||||||||||||| ||||||||||||||||| Sbjct: 633 tttcgcattgccgcacatcttgggctgggaccaggcc 669 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 205 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 245 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 64 cctccacctccaggggagtcactggcctcaaagatgctctctggagcggttcattgacat 123 ||||| |||||||| ||||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct: 92 cctcctcctccaggagagtcactgacctaaaggatgctctctggagtggttctttgactt 151 Query: 124 tcaagcatgcactttc 139 || | ||||| ||||| Sbjct: 152 tccaacatgctctttc 167 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 698 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 757
>dbj|AK061569.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F08, full insert sequence Length = 1149 Score = 414 bits (209), Expect = e-112 Identities = 350/397 (88%) Strand = Plus / Plus Query: 251 caaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttctt 310 |||||| ||||||||||||||||| || |||| |||||| || || |||||||| || || Sbjct: 264 caaactggaatctggaggatctcgtgtgaacaaaaatggatcggtgatgttgactttttt 323 Query: 311 cccggcagttggacaaaggaagtacgactatacgaagaaacagctctttgctctgtcacc 370 |||||| || ||||||||||| || || ||| | |||||||||||||||||||||||||| Sbjct: 324 cccggctgtgggacaaaggaaatatgattattcaaagaaacagctctttgctctgtcacc 383 Query: 371 tactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaatttttccatga 430 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 384 tactgaagtcggaagcttgataagtcttgggcctgctgaatcttgtgaatttttccatga 443 Query: 431 tccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcgatcactcctct 490 ||| ||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||| Sbjct: 444 tccctccatgaaatcaagtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctct 503 Query: 491 tggcagtgataatggatacttcgttaacataactgttctgaataacgtgcagaagacaaa 550 |||| ||| | ||||||||| | || |||||||||||||| ||| |||||||||||| Sbjct: 504 cggcaatgacagtggatactttctgaatataactgttctgaacaacttgcagaagacaac 563 Query: 551 tgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgag 610 ||| || |||||| |||| | |||||||||| ||| ||||||||||||| |||||||| Sbjct: 564 tgagcgactttcactcccaatctcaaaagctgagtttacagttatgcgcacagcattgag 623 Query: 611 ttttgcattgccgcacatcatgggctgggaccaggcc 647 ||| ||||||||||||||| ||||||||||||||||| Sbjct: 624 tttcgcattgccgcacatcttgggctgggaccaggcc 660 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 196 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 236 Score = 63.9 bits (32), Expect = 1e-06 Identities = 65/76 (85%) Strand = Plus / Plus Query: 64 cctccacctccaggggagtcactggcctcaaagatgctctctggagcggttcattgacat 123 ||||| |||||||| ||||||||| ||| || |||||||||||||| ||||| ||||| | Sbjct: 83 cctcctcctccaggagagtcactgacctaaaggatgctctctggagtggttctttgactt 142 Query: 124 tcaagcatgcactttc 139 || | ||||| ||||| Sbjct: 143 tccaacatgctctttc 158 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Plus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 689 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 748
>gb|AY104422.1| Zea mays PCO123181 mRNA sequence Length = 1065 Score = 355 bits (179), Expect = 2e-94 Identities = 395/467 (84%) Strand = Plus / Plus Query: 180 aagtttgcgagctacactgtgttcaagggaaaggctgcactttcaataagtcctatcctt 239 |||||||| || || || |||||||||||||||||||||||||| ||| |||||| || Sbjct: 237 aagtttgcaagttataccgtgttcaagggaaaggctgcactttctatacatcctatactg 296 Query: 240 cctttatttaccaaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatg 299 || || | |||| | ||||| |||||||||||||| | || |||||| ||||||||| Sbjct: 297 ccaagtttcagcaaattagaatccggaggatctcgagtgagcaaaaatggatcagtaatg 356 Query: 300 ttgaccttcttcccggcagttggacaaaggaagtacgactatacgaagaaacagctcttt 359 |||||||||| || || ||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 357 ctgaccttctttcctgctgttggacaaaggaagtatgactatacaaagaaacagctcttt 416 Query: 360 gctctgtcacctactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaa 419 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 417 gctctgtcacctactgaagttggaagcttgataagtcttgggcctgctgaatcctgtgaa 476 Query: 420 tttttccatgatccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcg 479 ||||||||||| || | ||||||||||||| ||||||| ||||| ||||| ||||| Sbjct: 477 tttttccatgacccattcatgaaatcaagtaatgaaggaacggtgaaaaaatcgctgtcg 536 Query: 480 atcactcctcttggcagtgataatggatacttcgttaacataactgttctgaataacgtg 539 |||||||| ||||||||||| | ||||||||| ||||| ||||| ||| |||| | | Sbjct: 537 atcactccacttggcagtgacagtggatactttgttaatataaccgttgtgaacagtgca 596 Query: 540 cagaagacaaatgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgc 599 ||| ||| ||||| || |||||||||||| | ||||||||||| ||||| || || ||| Sbjct: 597 gagaggactaatgatcgtctttcagtccctatcacaaaagctgagtttgctgtgatccgc 656 Query: 600 acggcattgagttttgcattgccgcacatcatgggctgggaccaggc 646 || | |||||||||||||||| || || ||||| ||||||||||| Sbjct: 657 acaactctgagttttgcattgccacatattatgggttgggaccaggc 703 Score = 44.1 bits (22), Expect = 0.98 Identities = 28/30 (93%) Strand = Plus / Plus Query: 33 atgctccgcctctcccgcttcctcccctcc 62 ||||| || ||||||||||||||||||||| Sbjct: 96 atgctgcggctctcccgcttcctcccctcc 125
>gb|DQ244981.1| Zea mays clone 12041 mRNA sequence Length = 1039 Score = 347 bits (175), Expect = 5e-92 Identities = 394/467 (84%) Strand = Plus / Plus Query: 180 aagtttgcgagctacactgtgttcaagggaaaggctgcactttcaataagtcctatcctt 239 |||||||| || || || |||||||||||||||||||||||||| ||| |||||| || Sbjct: 258 aagtttgcaagttataccgtgttcaagggaaaggctgcactttctatacatcctatactg 317 Query: 240 cctttatttaccaaactcgaatctggaggatctcgagtcaacagaaatgggtcagtaatg 299 || || | |||| | ||||| |||||||||||||| | || |||||| ||||||||| Sbjct: 318 ccaagtttcagcaaattagaatccggaggatctcgagtgagcaaaaatggatcagtaatg 377 Query: 300 ttgaccttcttcccggcagttggacaaaggaagtacgactatacgaagaaacagctcttt 359 |||||||||| || || ||||||||||||||||| |||||||| |||||||||| |||| Sbjct: 378 ctgaccttctttcctgctgttggacaaaggaagtatgactatacaaagaaacagcacttt 437 Query: 360 gctctgtcacctactgaagttggaagcttgataagtcttggacctgctgaatcttgtgaa 419 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||| Sbjct: 438 gctctgtcacctactgaagttggaagcctgataagtcttgggcctgctgaatcctgtgaa 497 Query: 420 tttttccatgatccttccatgaaatcaagtcatgaaggtcaagtgaagaaatctttgtcg 479 ||||||||||| || ||||||||||||||| ||||||| ||||| ||||| ||||| Sbjct: 498 tttttccatgacccatccatgaaatcaagtaatgaaggaacggtgaaaaaatcgctgtcg 557 Query: 480 atcactcctcttggcagtgataatggatacttcgttaacataactgttctgaataacgtg 539 |||||||| ||||||||||| | ||||||||| ||||| ||||| ||| |||| | | Sbjct: 558 atcactccacttggcagtgacagtggatactttgttaatataaccgttgtgaacagtgca 617 Query: 540 cagaagacaaatgaacgcctttcagtccctgtaacaaaagctgaatttgcagttatgcgc 599 ||| ||| ||||| || |||||||||||| | ||||||||||| ||||| || || ||| Sbjct: 618 gagaggactaatgatcgtctttcagtccctatcacaaaagctgagtttgctgtgatccgc 677 Query: 600 acggcattgagttttgcattgccgcacatcatgggctgggaccaggc 646 || | |||||||||||||||| || || ||||| ||||||||||| Sbjct: 678 acaactctgagttttgcattgccacatattatgggttgggaccaggc 724 Score = 44.1 bits (22), Expect = 0.98 Identities = 28/30 (93%) Strand = Plus / Plus Query: 33 atgctccgcctctcccgcttcctcccctcc 62 ||||| || ||||||||||||||||||||| Sbjct: 117 atgctgcggctctcccgcttcctcccctcc 146
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 172 bits (87), Expect = 2e-39 Identities = 96/99 (96%) Strand = Plus / Minus Query: 350 acagctctttgctctgtcacctactgaagttggaagcttgataagtcttggacctgctga 409 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 3185033 acagctctttgctctgtcacctactgaagtcggaagcttgataagtcttgggcctgctga 3184974 Query: 410 atcttgtgaatttttccatgatccttccatgaaatcaag 448 |||||||||||||||||||||||| |||||||||||||| Sbjct: 3184973 atcttgtgaatttttccatgatccctccatgaaatcaag 3184935 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Minus Query: 523 ctgttctgaataacgtgcagaagacaaatgaacgcctttcagtccctgtaacaaaagctg 582 |||||||||| ||| |||||||||||| ||| || |||||| |||| | ||||||||| Sbjct: 3184132 ctgttctgaacaacttgcagaagacaactgagcgactttcactcccaatctcaaaagctg 3184073 Query: 583 aatttgcagttatgcgcacggcattgagt 611 | ||| ||||||||||||| ||||||||| Sbjct: 3184072 agtttacagttatgcgcacagcattgagt 3184044 Score = 65.9 bits (33), Expect = 3e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 261 tctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttcttcccggcagtt 320 |||||||||||||| || |||| |||||| || || |||||||| || |||||||| || Sbjct: 3185677 tctggaggatctcgtgtgaacaaaaatggatcggtgatgttgacttttttcccggctgtg 3185618 Query: 321 ggacaaaggaagtacgactatacgaagaaacag 353 ||||||||||| || || ||| | ||||||||| Sbjct: 3185617 ggacaaaggaaatatgattattcaaagaaacag 3185585 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 3185831 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 3185791 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Minus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 3183368 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 3183309 Score = 58.0 bits (29), Expect = 6e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 615 gcattgccgcacatcatgggctgggaccaggcc 647 ||||||||||||||| ||||||||||||||||| Sbjct: 3183429 gcattgccgcacatcttgggctgggaccaggcc 3183397 Score = 58.0 bits (29), Expect = 6e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 447 agtcatgaaggtcaagtgaagaaatctttgtcgatcactcctcttggcagtgataatgga 506 ||||||||||| |||||||| ||||| ||||| |||||||||| |||| ||| | |||| Sbjct: 3184842 agtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctctcggcaatgacagtgga 3184783 Query: 507 tactt 511 ||||| Sbjct: 3184782 tactt 3184778 Score = 52.0 bits (26), Expect = 0.004 Identities = 56/66 (84%) Strand = Plus / Minus Query: 74 caggggagtcactggcctcaaagatgctctctggagcggttcattgacattcaagcatgc 133 |||| ||||||||| ||| || |||||||||||||| ||||| ||||| ||| | ||||| Sbjct: 3186029 caggagagtcactgacctaaaggatgctctctggagtggttctttgactttccaacatgc 3185970 Query: 134 actttc 139 ||||| Sbjct: 3185969 tctttc 3185964 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Minus Query: 39 cgcctctcccgcttcctcccctccacctcca 69 ||||||||||||||| |||||||| |||||| Sbjct: 3186943 cgcctctcccgcttcgtcccctcctcctcca 3186913
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419H03 Length = 129020 Score = 172 bits (87), Expect = 2e-39 Identities = 96/99 (96%) Strand = Plus / Minus Query: 350 acagctctttgctctgtcacctactgaagttggaagcttgataagtcttggacctgctga 409 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 113187 acagctctttgctctgtcacctactgaagtcggaagcttgataagtcttgggcctgctga 113128 Query: 410 atcttgtgaatttttccatgatccttccatgaaatcaag 448 |||||||||||||||||||||||| |||||||||||||| Sbjct: 113127 atcttgtgaatttttccatgatccctccatgaaatcaag 113089 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Minus Query: 523 ctgttctgaataacgtgcagaagacaaatgaacgcctttcagtccctgtaacaaaagctg 582 |||||||||| ||| |||||||||||| ||| || |||||| |||| | ||||||||| Sbjct: 112286 ctgttctgaacaacttgcagaagacaactgagcgactttcactcccaatctcaaaagctg 112227 Query: 583 aatttgcagttatgcgcacggcattgagt 611 | ||| ||||||||||||| ||||||||| Sbjct: 112226 agtttacagttatgcgcacagcattgagt 112198 Score = 65.9 bits (33), Expect = 3e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 261 tctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttcttcccggcagtt 320 |||||||||||||| || |||| |||||| || || |||||||| || |||||||| || Sbjct: 113831 tctggaggatctcgtgtgaacaaaaatggatcggtgatgttgacttttttcccggctgtg 113772 Query: 321 ggacaaaggaagtacgactatacgaagaaacag 353 ||||||||||| || || ||| | ||||||||| Sbjct: 113771 ggacaaaggaaatatgattattcaaagaaacag 113739 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 113985 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 113945 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Minus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 111522 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 111463 Score = 58.0 bits (29), Expect = 6e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 615 gcattgccgcacatcatgggctgggaccaggcc 647 ||||||||||||||| ||||||||||||||||| Sbjct: 111583 gcattgccgcacatcttgggctgggaccaggcc 111551 Score = 58.0 bits (29), Expect = 6e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 447 agtcatgaaggtcaagtgaagaaatctttgtcgatcactcctcttggcagtgataatgga 506 ||||||||||| |||||||| ||||| ||||| |||||||||| |||| ||| | |||| Sbjct: 112996 agtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctctcggcaatgacagtgga 112937 Query: 507 tactt 511 ||||| Sbjct: 112936 tactt 112932 Score = 52.0 bits (26), Expect = 0.004 Identities = 56/66 (84%) Strand = Plus / Minus Query: 74 caggggagtcactggcctcaaagatgctctctggagcggttcattgacattcaagcatgc 133 |||| ||||||||| ||| || |||||||||||||| ||||| ||||| ||| | ||||| Sbjct: 114183 caggagagtcactgacctaaaggatgctctctggagtggttctttgactttccaacatgc 114124 Query: 134 actttc 139 ||||| Sbjct: 114123 tctttc 114118 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Minus Query: 39 cgcctctcccgcttcctcccctccacctcca 69 ||||||||||||||| |||||||| |||||| Sbjct: 115097 cgcctctcccgcttcgtcccctcctcctcca 115067
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 172 bits (87), Expect = 2e-39 Identities = 96/99 (96%) Strand = Plus / Minus Query: 350 acagctctttgctctgtcacctactgaagttggaagcttgataagtcttggacctgctga 409 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct: 57220 acagctctttgctctgtcacctactgaagtcggaagcttgataagtcttgggcctgctga 57161 Query: 410 atcttgtgaatttttccatgatccttccatgaaatcaag 448 |||||||||||||||||||||||| |||||||||||||| Sbjct: 57160 atcttgtgaatttttccatgatccctccatgaaatcaag 57122 Score = 73.8 bits (37), Expect = 1e-09 Identities = 76/89 (85%) Strand = Plus / Minus Query: 523 ctgttctgaataacgtgcagaagacaaatgaacgcctttcagtccctgtaacaaaagctg 582 |||||||||| ||| |||||||||||| ||| || |||||| |||| | ||||||||| Sbjct: 56319 ctgttctgaacaacttgcagaagacaactgagcgactttcactcccaatctcaaaagctg 56260 Query: 583 aatttgcagttatgcgcacggcattgagt 611 | ||| ||||||||||||| ||||||||| Sbjct: 56259 agtttacagttatgcgcacagcattgagt 56231 Score = 65.9 bits (33), Expect = 3e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 261 tctggaggatctcgagtcaacagaaatgggtcagtaatgttgaccttcttcccggcagtt 320 |||||||||||||| || |||| |||||| || || |||||||| || |||||||| || Sbjct: 57864 tctggaggatctcgtgtgaacaaaaatggatcggtgatgttgacttttttcccggctgtg 57805 Query: 321 ggacaaaggaagtacgactatacgaagaaacag 353 ||||||||||| || || ||| | ||||||||| Sbjct: 57804 ggacaaaggaaatatgattattcaaagaaacag 57772 Score = 65.9 bits (33), Expect = 3e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 183 tttgcgagctacactgtgttcaagggaaaggctgcactttc 223 ||||| |||||||| |||||||||||||||||||||||||| Sbjct: 58018 tttgcaagctacaccgtgttcaagggaaaggctgcactttc 57978 Score = 63.9 bits (32), Expect = 1e-06 Identities = 53/60 (88%) Strand = Plus / Minus Query: 679 cagctagcaagcctaggttcgagcgcccaaacccagattctgaatgggacaggtgaagct 738 ||||||||||||| ||| | ||||||||| |||||||||| || ||||| |||||||||| Sbjct: 55555 cagctagcaagcccagggtggagcgcccacacccagattcagagtgggaaaggtgaagct 55496 Score = 58.0 bits (29), Expect = 6e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 615 gcattgccgcacatcatgggctgggaccaggcc 647 ||||||||||||||| ||||||||||||||||| Sbjct: 55616 gcattgccgcacatcttgggctgggaccaggcc 55584 Score = 58.0 bits (29), Expect = 6e-05 Identities = 56/65 (86%) Strand = Plus / Minus Query: 447 agtcatgaaggtcaagtgaagaaatctttgtcgatcactcctcttggcagtgataatgga 506 ||||||||||| |||||||| ||||| ||||| |||||||||| |||| ||| | |||| Sbjct: 57029 agtcatgaaggccaagtgaaaaaatcgttgtcagtcactcctctcggcaatgacagtgga 56970 Query: 507 tactt 511 ||||| Sbjct: 56969 tactt 56965 Score = 52.0 bits (26), Expect = 0.004 Identities = 56/66 (84%) Strand = Plus / Minus Query: 74 caggggagtcactggcctcaaagatgctctctggagcggttcattgacattcaagcatgc 133 |||| ||||||||| ||| || |||||||||||||| ||||| ||||| ||| | ||||| Sbjct: 58216 caggagagtcactgacctaaaggatgctctctggagtggttctttgactttccaacatgc 58157 Query: 134 actttc 139 ||||| Sbjct: 58156 tctttc 58151 Score = 46.1 bits (23), Expect = 0.25 Identities = 29/31 (93%) Strand = Plus / Minus Query: 39 cgcctctcccgcttcctcccctccacctcca 69 ||||||||||||||| |||||||| |||||| Sbjct: 59130 cgcctctcccgcttcgtcccctcctcctcca 59100
>ref|NM_105795.3| Arabidopsis thaliana unknown protein (AT1G71260) mRNA, complete cds Length = 928 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 420 tttttccatgatccttccatgaaatcaagtcatgaaggtcaagt 463 ||||||||||| |||||||||||||||||| ||| |||||||| Sbjct: 427 tttttccatgacccttccatgaaatcaagtaatgctggtcaagt 470 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 357 tttgctctgtcacctactgaagttgga 383 |||||| |||||||||||||||||||| Sbjct: 364 tttgctttgtcacctactgaagttgga 390 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 567 cctgtaacaaaagctgaatttgcagt 592 ||||| |||||||||||||||||||| Sbjct: 574 cctgtcacaaaagctgaatttgcagt 599
>gb|AY122961.1| Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds Length = 748 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 420 tttttccatgatccttccatgaaatcaagtcatgaaggtcaagt 463 ||||||||||| |||||||||||||||||| ||| |||||||| Sbjct: 400 tttttccatgacccttccatgaaatcaagtaatgctggtcaagt 443 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 357 tttgctctgtcacctactgaagttgga 383 |||||| |||||||||||||||||||| Sbjct: 337 tttgctttgtcacctactgaagttgga 363 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 567 cctgtaacaaaagctgaatttgcagt 592 ||||| |||||||||||||||||||| Sbjct: 547 cctgtcacaaaagctgaatttgcagt 572
>gb|AY072110.1| Arabidopsis thaliana unknown protein (At1g71260) mRNA, complete cds Length = 881 Score = 56.0 bits (28), Expect = 3e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 420 tttttccatgatccttccatgaaatcaagtcatgaaggtcaagt 463 ||||||||||| |||||||||||||||||| ||| |||||||| Sbjct: 427 tttttccatgacccttccatgaaatcaagtaatgctggtcaagt 470 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 357 tttgctctgtcacctactgaagttgga 383 |||||| |||||||||||||||||||| Sbjct: 364 tttgctttgtcacctactgaagttgga 390 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 567 cctgtaacaaaagctgaatttgcagt 592 ||||| |||||||||||||||||||| Sbjct: 574 cctgtcacaaaagctgaatttgcagt 599
>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete sequence Length = 193159 Score = 50.1 bits (25), Expect = 0.016 Identities = 25/25 (100%) Strand = Plus / Plus Query: 51 ttcctcccctccacctccacctcca 75 ||||||||||||||||||||||||| Sbjct: 105728 ttcctcccctccacctccacctcca 105752
>gb|AC016162.5|AC016162 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence Length = 107579 Score = 50.1 bits (25), Expect = 0.016 Identities = 28/29 (96%) Strand = Plus / Plus Query: 420 tttttccatgatccttccatgaaatcaag 448 ||||||||||| ||||||||||||||||| Sbjct: 80215 tttttccatgacccttccatgaaatcaag 80243 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 357 tttgctctgtcacctactgaagttgga 383 |||||| |||||||||||||||||||| Sbjct: 80152 tttgctttgtcacctactgaagttgga 80178 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 567 cctgtaacaaaagctgaatttgcagt 592 ||||| |||||||||||||||||||| Sbjct: 80653 cctgtcacaaaagctgaatttgcagt 80678
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 48.1 bits (24), Expect = 0.062 Identities = 31/32 (96%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 46 cccgcttcctcccct-ccacctccacctccag 76 ||||||||||||||| |||||||||||||||| Sbjct: 29220668 cccgcttcctccccttccacctccacctccag 29220699 Score = 44.1 bits (22), Expect = 0.98 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 47 ccgcttcctcc-cctccacctccacctcca 75 ||||||||||| |||||||||||||||||| Sbjct: 4218788 ccgcttcctccacctccacctccacctcca 4218759
>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08, complete sequence Length = 157734 Score = 48.1 bits (24), Expect = 0.062 Identities = 31/32 (96%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 46 cccgcttcctcccct-ccacctccacctccag 76 ||||||||||||||| |||||||||||||||| Sbjct: 130127 cccgcttcctccccttccacctccacctccag 130158
>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence Length = 149892 Score = 48.1 bits (24), Expect = 0.062 Identities = 31/32 (96%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 46 cccgcttcctcccct-ccacctccacctccag 76 ||||||||||||||| |||||||||||||||| Sbjct: 23714 cccgcttcctccccttccacctccacctccag 23745
>emb|CT982611.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 563 Score = 46.1 bits (23), Expect = 0.25 Identities = 65/79 (82%) Strand = Plus / Plus Query: 564 gtccctgtaacaaaagctgaatttgcagttatgcgcacggcattgagttttgcattgccg 623 |||||||| ||| |||||||||||| || ||| || |||| |||||||| ||||| Sbjct: 142 gtccctgttacagcagctgaatttgccgtcatgaagacagcatgtagttttgctttgcct 201 Query: 624 cacatcatgggctgggacc 642 ||||||||||| ||||||| Sbjct: 202 cacatcatgggttgggacc 220
>gb|BC070772.1| Xenopus laevis hypothetical protein MGC83806, mRNA (cDNA clone MGC:83806 IMAGE:6642302), complete cds Length = 3028 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 160 atgagaatgcatctgctaagaag 182 ||||||||||||||||||||||| Sbjct: 1654 atgagaatgcatctgctaagaag 1676
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 42 ctctcccgcttcctcccctccac 64 ||||||||||||||||||||||| Sbjct: 31553952 ctctcccgcttcctcccctccac 31553930 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 ctcccctccacctccacctcca 75 |||||||||||||||||||||| Sbjct: 10075466 ctcccctccacctccacctcca 10075487
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 191 ctacactgtgttcaagggaaagg 213 ||||||||||||||||||||||| Sbjct: 56249 ctacactgtgttcaagggaaagg 56227
>emb|AL138717.6| Human DNA sequence from clone RP11-11D8 on chromosome 6 Contains the 5' end of the NCUBE1 gene for non-canonical ubiquitin conjugating enzyme 1, the gene for a novel protein similar to rag C protein (GTR2), an NACA (nascent-polypeptide-associated complex alpha polypeptide) pseudogene, the 5' end of the ANKRD6 gene for ankyrin repeat domain 6 (KIAA0957) and three CpG islands, complete sequence Length = 104309 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 52 tcctcccctccacctccacctcc 74 ||||||||||||||||||||||| Sbjct: 26906 tcctcccctccacctccacctcc 26884
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 42 ctctcccgcttcctcccctccac 64 ||||||||||||||||||||||| Sbjct: 66975 ctctcccgcttcctcccctccac 66953
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0046E05 Length = 162776 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 42 ctctcccgcttcctcccctccac 64 ||||||||||||||||||||||| Sbjct: 148016 ctctcccgcttcctcccctccac 147994
>dbj|AK230212.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL22-98-M11 Length = 365 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 567 cctgtaacaaaagctgaatttgcagt 592 ||||| |||||||||||||||||||| Sbjct: 40 cctgtcacaaaagctgaatttgcagt 65
>ref|NM_101308.2| Arabidopsis thaliana unknown protein (AT1G14410) mRNA, complete cds Length = 1104 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 408 gaatcttgtgaatttttccatgatcc 433 |||||||||||||| ||||||||||| Sbjct: 552 gaatcttgtgaattcttccatgatcc 577
>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03, complete sequence Length = 101218 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 cctccacctccacctccagggg 79 |||||||||||||||||||||| Sbjct: 69211 cctccacctccacctccagggg 69232
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 cctccacctccacctccagggg 79 |||||||||||||||||||||| Sbjct: 31859 cctccacctccacctccagggg 31880
>gb|AF332452.1| Arabidopsis thaliana putative DNA-binding protein p24 (At1g14410) mRNA, complete cds Length = 792 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 408 gaatcttgtgaatttttccatgatcc 433 |||||||||||||| ||||||||||| Sbjct: 469 gaatcttgtgaattcttccatgatcc 494
>gb|AY059097.1| Arabidopsis thaliana putative DNA-binding protein p24 (At1g14410) mRNA, complete cds Length = 823 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 408 gaatcttgtgaatttttccatgatcc 433 |||||||||||||| ||||||||||| Sbjct: 469 gaatcttgtgaattcttccatgatcc 494
>gb|AF370156.1| Arabidopsis thaliana putative DNA-binding protein p24 (At1g14410) mRNA, complete cds Length = 1113 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Plus Query: 408 gaatcttgtgaatttttccatgatcc 433 |||||||||||||| ||||||||||| Sbjct: 552 gaatcttgtgaattcttccatgatcc 577
>tpg|BK000890.1| TPA_inf: Oryza sativa transposon Rim2-M276, complete sequence Length = 10458 Score = 44.1 bits (22), Expect = 0.98 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Plus Query: 47 ccgcttcctcc-cctccacctccacctcca 75 ||||||||||| |||||||||||||||||| Sbjct: 8125 ccgcttcctccacctccacctccacctcca 8154
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 58 cctccacctccacctccagggg 79 |||||||||||||||||||||| Sbjct: 25797917 cctccacctccacctccagggg 25797938 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tcccctccacctccacctcca 75 ||||||||||||||||||||| Sbjct: 15676691 tcccctccacctccacctcca 15676711 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 23936125 ctcccctccacctccacctcc 23936105
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 ctcccctccacctccacctcca 75 |||||||||||||||||||||| Sbjct: 22935 ctcccctccacctccacctcca 22956
>dbj|BS000234.1| Pan troglodytes chromosome 22 clone:PTB-190I13, map 22, complete sequences Length = 174520 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 41076 cctcccctccacctccacctcc 41055 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 41093 cctcccctccacctccacctcc 41072 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 41240 cctcccctccacctccacctcc 41219
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111686 Score = 44.1 bits (22), Expect = 0.98 Identities = 25/26 (96%) Strand = Plus / Minus Query: 408 gaatcttgtgaatttttccatgatcc 433 |||||||||||||| ||||||||||| Sbjct: 60997 gaatcttgtgaattcttccatgatcc 60972
>dbj|AP001751.1| Homo sapiens genomic DNA, chromosome 21q, section 95/105 Length = 340000 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12568 cctcccctccacctccacctcc 12547 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12721 cctcccctccacctccacctcc 12700 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12766 cctcccctccacctccacctcc 12745 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12869 cctcccctccacctccacctcc 12848 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12947 cctcccctccacctccacctcc 12926
>emb|AL606654.3|OSJN00100 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0028M18, complete sequence Length = 132854 Score = 44.1 bits (22), Expect = 0.98 Identities = 29/30 (96%), Gaps = 1/30 (3%) Strand = Plus / Minus Query: 47 ccgcttcctcc-cctccacctccacctcca 75 ||||||||||| |||||||||||||||||| Sbjct: 61852 ccgcttcctccacctccacctccacctcca 61823
>dbj|AP001046.1| Homo sapiens genomic DNA, chromosome 21, clone:KB43F12, MX1-D21S171 region, complete sequence Length = 158063 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12568 cctcccctccacctccacctcc 12547 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12721 cctcccctccacctccacctcc 12700 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12766 cctcccctccacctccacctcc 12745 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12869 cctcccctccacctccacctcc 12848 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Minus Query: 53 cctcccctccacctccacctcc 74 |||||||||||||||||||||| Sbjct: 12947 cctcccctccacctccacctcc 12926
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 44.1 bits (22), Expect = 0.98 Identities = 22/22 (100%) Strand = Plus / Plus Query: 54 ctcccctccacctccacctcca 75 |||||||||||||||||||||| Sbjct: 65 ctcccctccacctccacctcca 86
>ref|NM_001062433.1| Oryza sativa (japonica cultivar-group) Os05g0490200 (Os05g0490200) mRNA, complete cds Length = 1874 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 211 ctcccctccacctccacctcc 191
>ref|XM_001174989.1| PREDICTED: Pan troglodytes mitogen-activated protein kinase binding protein 1-like (MAPKBP1), partial mRNA Length = 3728 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 3090 cctccacctccacctccaggg 3070
>ref|XM_001174158.1| PREDICTED: Pan troglodytes similar to MAPKBP1 protein (LOC750405), mRNA Length = 2995 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 2654 cctccacctccacctccaggg 2634
>ref|XM_001149707.1| PREDICTED: Pan troglodytes mitogen-activated protein kinase binding protein 1-like (MAPKBP1), mRNA Length = 4787 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 4165 cctccacctccacctccaggg 4145
>ref|XM_001148303.1| PREDICTED: Pan troglodytes hypothetical protein LOC740916 (LOC740916), mRNA Length = 1327 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 705 cctccacctccacctccaggg 685
>ref|XM_001148010.1| PREDICTED: Pan troglodytes hypothetical protein LOC740558 (LOC740558), mRNA Length = 2535 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 1899 cctccacctccacctccaggg 1879
>ref|XM_527026.2| PREDICTED: Pan troglodytes hypothetical LOC471648 (LOC471648), mRNA Length = 816 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 cctctcccgcttcctcccctc 61 ||||||||||||||||||||| Sbjct: 315 cctctcccgcttcctcccctc 295
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tcccctccacctccacctcca 75 ||||||||||||||||||||| Sbjct: 1297523 tcccctccacctccacctcca 1297543
>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence Length = 127568 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Plus Query: 565 tccctgtaacaaaagctgaatttgcagtt 593 ||||||| |||||||| |||||||||||| Sbjct: 99026 tccctgtcacaaaagcggaatttgcagtt 99054
>gb|AC146854.19| Medicago truncatula clone mth2-10i14, complete sequence Length = 116179 Score = 42.1 bits (21), Expect = 3.9 Identities = 27/29 (93%) Strand = Plus / Minus Query: 565 tccctgtaacaaaagctgaatttgcagtt 593 ||||||| |||||||| |||||||||||| Sbjct: 85108 tccctgtcacaaaagcggaatttgcagtt 85080
>gb|AC134342.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E01, complete sequence Length = 180426 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tcccctccacctccacctcca 75 ||||||||||||||||||||| Sbjct: 68795 tcccctccacctccacctcca 68815
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 4614 ctcccctccacctccacctcc 4594
>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence Length = 172179 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 caaatgttgatgagaatgcat 171 ||||||||||||||||||||| Sbjct: 164364 caaatgttgatgagaatgcat 164344
>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence Length = 168716 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 tcccctccacctccacctcca 75 ||||||||||||||||||||| Sbjct: 99742 tcccctccacctccacctcca 99762
>gb|AC092705.3| Homo sapiens chromosome 18, clone RP11-886H22, complete sequence Length = 137416 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 caaatgttgatgagaatgcat 171 ||||||||||||||||||||| Sbjct: 44428 caaatgttgatgagaatgcat 44408
>gb|AC008523.5| Homo sapiens chromosome 5 clone CTC-464B1, complete sequence Length = 120236 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 cctctcccgcttcctcccctc 61 ||||||||||||||||||||| Sbjct: 89086 cctctcccgcttcctcccctc 89066
>emb|AL449363.12| Human DNA sequence from clone CTA-444M12 on chromosome 6 Contains the 5' part of the SLC2A12 gene for solute carrier family 2 (facilitated glucose transporter) member 12 and a high-mobility group (nonhistone chromosomal) protein variants I and Y (HMGIY) pseudogene, complete sequence Length = 141289 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 7207 cctccacctccacctccaggg 7187
>gb|AC154451.2| Mus musculus BAC clone RP24-171K15 from chromosome 13, complete sequence Length = 162744 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 415 gtgaatttttccatgatccttccat 439 ||||||||||| ||||||||||||| Sbjct: 57561 gtgaatttttcaatgatccttccat 57537
>emb|AL137796.6| Human DNA sequence from clone RP5-1098D14 on chromosome 1 Contains STSs and GSSs, complete sequence Length = 87924 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 5012 cctccacctccacctccaggg 5032
>gb|AC020659.5|AC020659 Homo sapiens chromosome 15 clone RP11-23P13 map 15q14, complete sequence Length = 139376 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 68118 cctccacctccacctccaggg 68098
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 cccctccacctccacctccagggga 80 |||| |||||||||||||||||||| Sbjct: 1138532 ccccgccacctccacctccagggga 1138508
>emb|CR609233.1| full-length cDNA clone CS0CAP005YD14 of Thymus of Homo sapiens (human) Length = 1207 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 626 cctccacctccacctccaggg 606
>dbj|AB177850.1| Homo sapiens mRNA for KIAA0596 splice variant 1 Length = 5520 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 5457 cctccacctccacctccaggg 5437
>dbj|AP006634.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT15O18, TM0086, complete sequence Length = 133572 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 422 tttccatgatccttccatgaaatca 446 ||||||| ||||||||||||||||| Sbjct: 104261 tttccatcatccttccatgaaatca 104237
>dbj|AK105601.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-A06, full insert sequence Length = 1630 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 199 ctcccctccacctccacctcc 179
>dbj|AK101147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026P06, full insert sequence Length = 1874 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 212 ctcccctccacctccacctcc 192
>emb|BX648786.1|HSM808937 Homo sapiens mRNA; cDNA DKFZp686A24169 (from clone DKFZp686A24169) Length = 6647 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 6566 cctccacctccacctccaggg 6546
>gb|BC087466.1| Xenopus laevis hypothetical LOC496059, mRNA (cDNA clone MGC:99299 IMAGE:7201834), complete cds Length = 1453 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 965 cctccacctccacctccaggg 985
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 3.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 56 cccctccacctccacctccagggga 80 |||| |||||||||||||||||||| Sbjct: 811890 ccccgccacctccacctccagggga 811866
>emb|AL929052.10| Mouse DNA sequence from clone RP23-464H11 on chromosome 2, complete sequence Length = 87635 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 gaagaaacagctctttgctct 364 ||||||||||||||||||||| Sbjct: 78244 gaagaaacagctctttgctct 78264
>ref|NM_014994.1| Homo sapiens mitogen activated protein kinase binding protein 1 (MAPKBP1), mRNA emb|AL833267.1|HSM804580 Homo sapiens mRNA; cDNA DKFZp451I0110 (from clone DKFZp451I0110) Length = 7174 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 6535 cctccacctccacctccaggg 6515
>gb|AC153512.2| Mus musculus 10 BAC RP23-18K14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209885 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 54 ctcccctccacctccacctcc 74 ||||||||||||||||||||| Sbjct: 130891 ctcccctccacctccacctcc 130871
>dbj|AB011168.2| Homo sapiens mRNA for KIAA0596 protein, partial cds Length = 7161 Score = 42.1 bits (21), Expect = 3.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 cctccacctccacctccaggg 78 ||||||||||||||||||||| Sbjct: 6543 cctccacctccacctccaggg 6523 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 184,589,268 Number of extensions: 10228095 Number of successful extensions: 212896 Number of sequences better than 10.0: 74 Number of HSP's gapped: 212888 Number of HSP's successfully gapped: 146 Length of query: 1020 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 997 Effective length of database: 18,503,978,556 Effective search space: 18448466620332 Effective search space used: 18448466620332 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)