ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf56m17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK071718:Os03g0722000 30 3.7
2Os08g0411900:Os08g0411900 30 3.7
3AK072386:Os09g0100800 30 3.7
4AK110198: 29 6.4
5AK066368:Os10g0182000 28 8.3

>AK071718:Os03g0722000 |
          Length = 337
 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 746 ASDHPAPACLPLGGDAAALVGR-QRSGPSTGRDTLRQW 636
           ++D PA A L   G A A+VGR +R G   G D L +W
Sbjct: 34  SADDPANALLHDAGVARAVVGRLRREGSGAGNDGLCRW 71



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>Os08g0411900:Os08g0411900 |
          Length = 959

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
 Frame = -2

Query: 648 LTTVAVMSRSWERIRESLF------HGFKLVKEVSFCAPVDVSCKIRLGPTLKESAHKNE 487
           L T     + WER++ S+F      H  ++VK + F +  D+   +++   L  S +  +
Sbjct: 389 LATKPATKQEWERVKNSIFCVLERDHEMEVVKRILFLSYYDLPDYLKV-CLLDLSRYPED 447

Query: 486 SIY*CREAILRG-----RGGREAAPLEDVRYPLLGNVLARTRTMLVQ 361
            +  C   I R        G++   LE+V       ++ R    LVQ
Sbjct: 448 FLIKCEHMIWRWIAEGFISGKQGQNLEEVGERYFNELINRNMVQLVQ 494



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>AK072386:Os09g0100800 |
          Length = 397

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 598 AFPYPFPASGHDRHCRKVSRPVLGPDRC--RPTSAAASPPNGKQ 723
           A P P P    DR  +K S PV  P+R   + T+    PP+ KQ
Sbjct: 34  ALPLPLPPP--DRKRKKASEPVNSPERAKKKKTATPHEPPSAKQ 75



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>AK110198: |
          Length = 961

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +1

Query: 634  RHCRKVSRPVLGPDRCRPT----SAAASPPNGKQAGAG*SEARTR 756
            +H RKVS  VL P R RPT       +SPP       G S +RTR
Sbjct: 918  QHHRKVSHQVLSPPRNRPTPPTIKVVSSPPAAGATAHGVS-SRTR 961



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>AK066368:Os10g0182000 |
          Length = 999

 Score = 28.5 bits (62), Expect = 8.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 389 RTFPSSGYLTSSSGAASLPPRPRSIAS 469
           R  P++ YLTSSS AA+  P P ++A+
Sbjct: 23  RVLPAAIYLTSSSSAAASAPAPPAMAA 49


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 29,158,117
Number of extensions: 658018
Number of successful extensions: 1798
Number of sequences better than 10.0: 5
Number of HSP's gapped: 1793
Number of HSP's successfully gapped: 5
Length of query: 352
Length of database: 15,399,855
Length adjustment: 102
Effective length of query: 250
Effective length of database: 11,315,673
Effective search space: 2828918250
Effective search space used: 2828918250
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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