ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf60e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001071127.1| Oryza sativa (japonica cultivar-group) Os10g0413500 (Os10g0413500) mRNA, complete cds Length = 1212 Score = 781 bits (394), Expect = 0.0 Identities = 706/810 (87%) Strand = Plus / Plus Query: 179 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 238 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 162 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 221 Query: 239 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 298 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 222 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 281 Query: 299 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 358 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 282 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 341 Query: 359 atgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattgctgct 418 ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct: 342 atgttcctcgagaagaagcaggacgaagttgtagctaggatagaggagaggattgcagct 401 Query: 419 tggactttccttccgtcggagaatggcgagtccattcaaatattacattataagaatggt 478 ||||| |||||||| | || |||||||| ||||||||||||||||||||| ||||||| Sbjct: 402 tggacgttccttccaccagataatggcgaatccattcaaatattacattatcagaatggc 461 Query: 479 gagaagtatgagccacactacgattacttccatgacaaaaataaccaagctctcggtggt 538 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || Sbjct: 462 gagaagtatgagccacactatgattacttccatgacaaaaataatcaagctcttggagga 521 Query: 539 caccgaatagcgacagtgctcatgtacctgtctaacattgagaagggtggagagaccatc 598 || || || || || |||||||||||||| || || ||| |||||| |||||||||||| Sbjct: 522 catcggatcgccactgtgctcatgtacctttcagacgttgggaaggggggagagaccatc 581 Query: 599 ttccctaacgcagaggggaagttaacacaacacaaggatgagacggcatctgagtgtgct 658 || || | ||||||||||||||| ||||| ||||||||| || ||||| |||||| Sbjct: 582 tttccagaagcagaggggaagttattacaacccaaggatgatacatggtctgactgtgct 641 Query: 659 aaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccac 718 |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| |||||| Sbjct: 642 aaaaatggatatgcagtaaaaccggtaaagggtgatgcccttctgttcttcagtctccac 701 Query: 719 cctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtcatcgaaggccag 778 || |||||||| |||||| ||||||| |||||||||||||||| ||||| ||||| ||| Sbjct: 702 cccgatgcaacaacagactctgacagcctgcacgggagctgcccggtcattgaaggtcag 761 Query: 779 aagtggtccgccacgaaatggatccatgtgaggtccttcgaaaactcaggcaagcaggga 838 ||||||||||| || |||||||||||||||||||||||||| | ||| | |||||||||| Sbjct: 762 aagtggtccgcaactaaatggatccatgtgaggtccttcgacatctctgtcaagcaggga 821 Query: 839 gcttccggtgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggg 898 |||||| ||||||||||||||||||||| ||||||||| | ||||||||||| || ||| Sbjct: 822 gcttccactgacgggtgcgaggatgagaacgtcctctgcccccagtgggctgcagtaggg 881 Query: 899 gagtgcgccaagaaccccaactatatggtgggcacgaaggaagcacctggcttctgcagg 958 ||||| |||||||| || ||||| |||||||| || || |||||||||||||||||| || Sbjct: 882 gagtgtgccaagaatccgaactacatggtgggtaccaatgaagcacctggcttctgccgg 941 Query: 959 aagagctgcaacgtgtgcgtgcagtaagtt 988 ||||||||||| ||||| | ||||||||| Sbjct: 942 aagagctgcaatgtgtgtgcacagtaagtt 971
>dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A08, full insert sequence Length = 1212 Score = 781 bits (394), Expect = 0.0 Identities = 706/810 (87%) Strand = Plus / Plus Query: 179 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 238 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 162 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 221 Query: 239 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 298 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 222 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 281 Query: 299 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 358 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 282 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 341 Query: 359 atgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattgctgct 418 ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct: 342 atgttcctcgagaagaagcaggacgaagttgtagctaggatagaggagaggattgcagct 401 Query: 419 tggactttccttccgtcggagaatggcgagtccattcaaatattacattataagaatggt 478 ||||| |||||||| | || |||||||| ||||||||||||||||||||| ||||||| Sbjct: 402 tggacgttccttccaccagataatggcgaatccattcaaatattacattatcagaatggc 461 Query: 479 gagaagtatgagccacactacgattacttccatgacaaaaataaccaagctctcggtggt 538 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || Sbjct: 462 gagaagtatgagccacactatgattacttccatgacaaaaataatcaagctcttggagga 521 Query: 539 caccgaatagcgacagtgctcatgtacctgtctaacattgagaagggtggagagaccatc 598 || || || || || |||||||||||||| || || ||| |||||| |||||||||||| Sbjct: 522 catcggatcgccactgtgctcatgtacctttcagacgttgggaaggggggagagaccatc 581 Query: 599 ttccctaacgcagaggggaagttaacacaacacaaggatgagacggcatctgagtgtgct 658 || || | ||||||||||||||| ||||| ||||||||| || ||||| |||||| Sbjct: 582 tttccagaagcagaggggaagttattacaacccaaggatgatacatggtctgactgtgct 641 Query: 659 aaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccac 718 |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| |||||| Sbjct: 642 aaaaatggatatgcagtaaaaccggtaaagggtgatgcccttctgttcttcagtctccac 701 Query: 719 cctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtcatcgaaggccag 778 || |||||||| |||||| ||||||| |||||||||||||||| ||||| ||||| ||| Sbjct: 702 cccgatgcaacaacagactctgacagcctgcacgggagctgcccggtcattgaaggtcag 761 Query: 779 aagtggtccgccacgaaatggatccatgtgaggtccttcgaaaactcaggcaagcaggga 838 ||||||||||| || |||||||||||||||||||||||||| | ||| | |||||||||| Sbjct: 762 aagtggtccgcaactaaatggatccatgtgaggtccttcgacatctctgtcaagcaggga 821 Query: 839 gcttccggtgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggg 898 |||||| ||||||||||||||||||||| ||||||||| | ||||||||||| || ||| Sbjct: 822 gcttccactgacgggtgcgaggatgagaacgtcctctgcccccagtgggctgcagtaggg 881 Query: 899 gagtgcgccaagaaccccaactatatggtgggcacgaaggaagcacctggcttctgcagg 958 ||||| |||||||| || ||||| |||||||| || || |||||||||||||||||| || Sbjct: 882 gagtgtgccaagaatccgaactacatggtgggtaccaatgaagcacctggcttctgccgg 941 Query: 959 aagagctgcaacgtgtgcgtgcagtaagtt 988 ||||||||||| ||||| | ||||||||| Sbjct: 942 aagagctgcaatgtgtgtgcacagtaagtt 971
>dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B02, full insert sequence Length = 1127 Score = 773 bits (390), Expect = 0.0 Identities = 706/810 (87%), Gaps = 1/810 (0%) Strand = Plus / Plus Query: 179 gacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaaggggttc 238 ||||| ||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 164 gacccatcccgcgtcgtgcagctctcgtggcgccccagggcgttcctgcacaaggggttc 223 Query: 239 ctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcg 298 || |||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| Sbjct: 224 ctgacggacgcggagtgcgagcacctgatctcgctggcgaaggacaagctggagaagtcg 283 Query: 299 atggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggc 358 |||||||||||||| ||||| || ||||||||| |||||| ||||| |||||||| ||| Sbjct: 284 atggtggcggacaacgagtccgggaagagcgtcatgagcgaggtgcggaccagctccggc 343 Query: 359 atgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattgctgct 418 ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||| Sbjct: 344 atgttcctcgagaagaagcaggacgaagttgtagctaggatagaggagaggattgcagct 403 Query: 419 tggactttccttccgtcggagaatggcgagtccattcaaatattacattataagaatggt 478 ||||| |||||||| | || |||||||| ||||||||||||||||||||| ||||||| Sbjct: 404 tggacgttccttccaccagataatggcgaatccattcaaatattacattatcagaatggc 463 Query: 479 gagaagtatgagccacactacgattacttccatgacaaaaataaccaagctctcggtggt 538 |||||||||||||||||||| ||||||||||||||||||||||| |||||||| || || Sbjct: 464 gagaagtatgagccacactatgattacttccatgacaaaaataatcaagctcttggagga 523 Query: 539 caccgaatagcgacagtgctcatgtacctgtctaacattgagaagggtggagagaccatc 598 || || || || || |||||||||||||| || || ||| |||||| |||||||||||| Sbjct: 524 catcggatcgccactgtgctcatgtacctttcagacgttgggaaggggggagagaccatc 583 Query: 599 ttccctaacgcagaggggaagttaacacaacacaaggatgagacggcatctgagtgtgct 658 || || | ||||||||||||||| ||||| ||||||||| || ||||| |||||| Sbjct: 584 tttccagaagcagaggggaagttattacaacccaaggatgatacatggtctgactgtgct 643 Query: 659 aaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccac 718 |||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||| |||||| Sbjct: 644 aaaaatggatatgcagtaaaaccggtaaagggtgatgcccttctgttcttcagtctccac 703 Query: 719 cctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtcatcgaaggccag 778 || |||||||| |||||| ||||||| |||||||||||||||| ||||| ||||| ||| Sbjct: 704 cccgatgcaacaacagactctgacagcctgcacgggagctgcccggtcattgaaggtcag 763 Query: 779 aagtggtccgccacgaaatggatccatgtgaggtccttcgaaaactcaggcaagcaggga 838 ||||||||||| || |||||||||||||||||||||||||| | ||| | |||||||||| Sbjct: 764 aagtggtccgcaactaaatggatccatgtgaggtccttcgacatctctgtcaagcaggga 823 Query: 839 gcttccggtgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggg 898 |||||| ||||||||||||||||||||| ||||||||| | ||||||||||| || ||| Sbjct: 824 gcttccactgacgggtgcgaggatgagaacgtcctctgc-cccagtgggctgcagtaggg 882 Query: 899 gagtgcgccaagaaccccaactatatggtgggcacgaaggaagcacctggcttctgcagg 958 ||||| |||||||| || ||||| |||||||| || || |||||||||||||||||| || Sbjct: 883 gagtgtgccaagaatccgaactacatggtgggtaccaatgaagcacctggcttctgccgg 942 Query: 959 aagagctgcaacgtgtgcgtgcagtaagtt 988 ||||||||||| ||||| | ||||||||| Sbjct: 943 aagagctgcaatgtgtgtgcacagtaagtt 972
>gb|BT016704.1| Zea mays clone Contig537 mRNA sequence Length = 1224 Score = 573 bits (289), Expect = e-160 Identities = 664/789 (84%) Strand = Plus / Plus Query: 174 ccttcgacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaagg 233 |||||||||| ||||| || ||||| |||||||||| |||||| |||||||||||||||| Sbjct: 198 ccttcgacccatcccgagtggtccaactctcgtggcgccccagggcgttcctgcacaagg 257 Query: 234 ggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgaga 293 | ||||| ||||| ||||||||||||||| | |||| |||||| ||||||||||| |||| Sbjct: 258 gtttcctgtcggatgcggagtgcgaccacctcatcgcgctggccaaggacaagctggaga 317 Query: 294 agtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagct 353 |||| |||||||| || || ||||| || ||||| |||||||| || ||||| ||||||| Sbjct: 318 agtctatggtggccgataacgagtccggtaagagtgtccagagtgaggtgcgcaccagct 377 Query: 354 ctggcatgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattg 413 | |||||||| ||||||| || ||||||||||||||| | | |||||||||||||| Sbjct: 378 ccggcatgttcctcgagaggaagcaggatgaagtagtaacgagaatagaggagaggatat 437 Query: 414 ctgcttggactttccttccgtcggagaatggcgagtccattcaaatattacattataaga 473 |||||||||| || ||||| | || |||||||| |||||||| |||||||| || ||| Sbjct: 438 ctgcttggacatttcttccaccagaaaatggcgaatccattcagatattacactaccaga 497 Query: 474 atggtgagaagtatgagccacactacgattacttccatgacaaaaataaccaagctctcg 533 |||||||||| ||||| || |||||||| ||||||||||||||||| || ||||| | | Sbjct: 498 atggtgagaaatatgaaccccactacgactacttccatgacaaaaaaaatcaagccttgg 557 Query: 534 gtggtcaccgaatagcgacagtgctcatgtacctgtctaacattgagaagggtggagaga 593 |||| || || || || || ||||| |||||||| ||||| |||||||||||||||||| Sbjct: 558 gtggccatcgcatcgccactgtgctgatgtacctctctaatgttgagaagggtggagaga 617 Query: 594 ccatcttccctaacgcagaggggaagttaacacaacacaaggatgagacggcatctgagt 653 |||||||||| || |||||||||||| || ||||| ||||| | || ||||| | Sbjct: 618 ccatcttccccaatgcagaggggaagctattacaaccgaaggacaacacttggtctgatt 677 Query: 654 gtgctaaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttcttcagcc 713 |||| | |||||||||||| || || || ||||| ||||| ||||||||||||||||||| Sbjct: 678 gtgcaagaaatggatatgcagttaaaccggtaaagggtgatgccctgctgttcttcagcc 737 Query: 714 tccaccctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtcatcgaag 773 ||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||| Sbjct: 738 tccaccctgatgcaacgacagactctgacagcttgcacggtagctgccccgtaatcgaag 797 Query: 774 gccagaagtggtccgccacgaaatggatccatgtgaggtccttcgaaaactcaggcaagc 833 |||||||||||||||| || |||||||||||||||||||| || || | | || |||| Sbjct: 798 gccagaagtggtccgcaactaaatggatccatgtgaggtcatttgacctccctgggaagc 857 Query: 834 agggagcttccggtgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccg 893 || | |||| |||||| |||||||| || ||| |||||||| | |||||||| || | Sbjct: 858 agccgggttcctctgacggatgcgaggacgacaatatcctctgcccccagtgggcagctg 917 Query: 894 ttggggagtgcgccaagaaccccaactatatggtgggcacgaaggaagcacctggcttct 953 | || ||||| ||||||||||| ||||| |||||||| || |||||||| |||||||||| Sbjct: 918 tgggtgagtgtgccaagaaccctaactacatggtggggaccaaggaagctcctggcttct 977 Query: 954 gcaggaaga 962 || |||||| Sbjct: 978 gccggaaga 986
>dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G23, full insert sequence Length = 1152 Score = 563 bits (284), Expect = e-157 Identities = 530/612 (86%) Strand = Plus / Plus Query: 377 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttccgtcg 436 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| | Sbjct: 6 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttccacca 65 Query: 437 gagaatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacac 496 || |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 66 gataatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacac 125 Query: 497 tacgattacttccatgacaaaaataaccaagctctcggtggtcaccgaatagcgacagtg 556 || ||||||||||||||||||||||| |||||||| || || || || || || || ||| Sbjct: 126 tatgattacttccatgacaaaaataatcaagctcttggaggacatcggatcgccactgtg 185 Query: 557 ctcatgtacctgtctaacattgagaagggtggagagaccatcttccctaacgcagagggg 616 ||||||||||| || || ||| |||||| |||||||||||||| || | ||||||||| Sbjct: 186 ctcatgtacctttcagacgttgggaaggggggagagaccatctttccagaagcagagggg 245 Query: 617 aagttaacacaacacaaggatgagacggcatctgagtgtgctaaaaatggatatgctgta 676 |||||| ||||| ||||||||| || ||||| |||||||||||||||||||| ||| Sbjct: 246 aagttattacaacccaaggatgatacatggtctgactgtgctaaaaatggatatgcagta 305 Query: 677 aagcccgtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgacagac 736 || || ||||| ||||| ||||| ||||||||||| |||||||| |||||||| |||||| Sbjct: 306 aaaccggtaaagggtgatgcccttctgttcttcagtctccaccccgatgcaacaacagac 365 Query: 737 cctgacagtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaa 796 ||||||| |||||||||||||||| ||||| ||||| |||||||||||||| || ||| Sbjct: 366 tctgacagcctgcacgggagctgcccggtcattgaaggtcagaagtggtccgcaactaaa 425 Query: 797 tggatccatgtgaggtccttcgaaaactcaggcaagcagggagcttccggtgacgggtgc 856 ||||||||||||||||||||||| | ||| | |||||||||||||||| |||||||||| Sbjct: 426 tggatccatgtgaggtccttcgacatctctgtcaagcagggagcttccactgacgggtgc 485 Query: 857 gaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgccaagaacccc 916 ||||||||||| ||||||||| | ||||||||||| || |||||||| |||||||| || Sbjct: 486 gaggatgagaacgtcctctgcccccagtgggctgcagtaggggagtgtgccaagaatccg 545 Query: 917 aactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctgcaacgtgtgc 976 ||||| |||||||| || || |||||||||||||||||| ||||||||||||| ||||| Sbjct: 546 aactacatggtgggtaccaatgaagcacctggcttctgccggaagagctgcaatgtgtgt 605 Query: 977 gtgcagtaagtt 988 | ||||||||| Sbjct: 606 gcacagtaagtt 617
>gb|AY109606.1| Zea mays CL4591_1 mRNA sequence Length = 1093 Score = 454 bits (229), Expect = e-124 Identities = 536/640 (83%) Strand = Plus / Plus Query: 174 ccttcgacccctcccgcgtcgtccagctctcgtggcaccccagagcgttcctgcacaagg 233 |||||||||| ||||| || ||||| |||||||||| |||||| |||||||||||||||| Sbjct: 116 ccttcgacccatcccgagtggtccaactctcgtggcgccccagggcgttcctgcacaagg 175 Query: 234 ggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagcttgaga 293 | ||||| ||||| ||||||||||||||| | |||| |||||| ||||||||||| |||| Sbjct: 176 gtttcctgtcggatgcggagtgcgaccacctcatcgcgctggccaaggacaagctggaga 235 Query: 294 agtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagct 353 |||| |||||||| || || ||||| || ||||| |||||||| || ||||| ||||||| Sbjct: 236 agtctatggtggccgataacgagtccggtaagagtgtccagagtgaggtgcgcaccagct 295 Query: 354 ctggcatgtttctcgagaagagtcaggatgaagtagtagcaatgatagaggagaggattg 413 | |||||||| ||||||| || ||||||||||||||| | | |||||||||||||| Sbjct: 296 ccggcatgttcctcgagaggaagcaggatgaagtagtaacgagaatagaggagaggatat 355 Query: 414 ctgcttggactttccttccgtcggagaatggcgagtccattcaaatattacattataaga 473 |||||||||| || ||||| | || |||||||| |||||||| |||||||| || ||| Sbjct: 356 ctgcttggacatttcttccaccagaaaatggcgaatccattcagatattacactaccaga 415 Query: 474 atggtgagaagtatgagccacactacgattacttccatgacaaaaataaccaagctctcg 533 |||||||||| ||||| || |||||||| |||||||||||| ||| || || || | Sbjct: 416 atggtgagaaatatgaaccccactacgactacttccatgacnnnnntaatcaggccctgg 475 Query: 534 gtggtcaccgaatagcgacagtgctcatgtacctgtctaacattgagaagggtggagaga 593 | || || || || || || ||||| |||||||| || || | |||||||||||||||| Sbjct: 476 gcggccatcgcattgccactgtgctgatgtacctatcaaatgtcgagaagggtggagaga 535 Query: 594 ccatcttccctaacgcagaggggaagttaacacaacacaaggatgagacggcatctgagt 653 |||||||||| || |||||||||||| || |||| |||||| || || ||||| | Sbjct: 536 ccatcttccccaatgcagaggggaagctattgcaacccaaggacgacacttggtctgatt 595 Query: 654 gtgctaaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttcttcagcc 713 |||| | ||| |||||||| || || || ||||| ||||| ||||||||||||||||| | Sbjct: 596 gtgcaagaaacggatatgcagttaaaccggtaaagggtgatgccctgctgttcttcagtc 655 Query: 714 tccaccctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtcatcgaag 773 ||||||||||| |||| |||||| ||||||| |||||||| |||||||||| |||||||| Sbjct: 656 tccaccctgattcaacaacagactctgacagcttgcacggtagctgccccgccatcgaag 715 Query: 774 gccagaagtggtccgccacgaaatggatccatgtgaggtc 813 |||||||||||||||| || |||||||||||||||||||| Sbjct: 716 gccagaagtggtccgcgactaaatggatccatgtgaggtc 755 Score = 115 bits (58), Expect = 4e-22 Identities = 98/113 (86%) Strand = Plus / Plus Query: 857 gaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgccaagaacccc 916 ||||| || ||||||||||| ||||||| ||||| || ||||||||||||||||| Sbjct: 799 gaggacgacaatgtcctctgnnnnnagtgggcggccgtgggcgagtgcgccaagaaccct 858 Query: 917 aactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctgcaa 969 ||||| |||||||| || ||||||||||||||||||||| ||||||||||||| Sbjct: 859 aactacatggtggggaccaaggaagcacctggcttctgccggaagagctgcaa 911
>emb|CT832876.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA010N19, full insert sequence Length = 491 Score = 353 bits (178), Expect = 9e-94 Identities = 301/342 (88%) Strand = Plus / Plus Query: 647 tctgagtgtgctaaaaatggatatgctgtaaagcccgtaaaaggtgacgccctgctgttc 706 ||||| |||||||||||||||||||| ||||| || ||||| ||||| ||||| |||||| Sbjct: 13 tctgactgtgctaaaaatggatatgcagtaaaaccggtaaagggtgatgcccttctgttc 72 Query: 707 ttcagcctccaccctgatgcaacgacagaccctgacagtttgcacgggagctgccccgtc 766 ||||| |||||||| |||||||| |||||| ||||||| |||||||||||||||| ||| Sbjct: 73 ttcagtctccaccccgatgcaacaacagactctgacagcctgcacgggagctgcccggtc 132 Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgtgaggtccttcgaaaactca 826 || ||||| |||||||||||||| || |||||||||||||||||||||||||| | ||| Sbjct: 133 attgaaggtcagaagtggtccgcaactaaatggatccatgtgaggtccttcgacatctct 192 Query: 827 ggcaagcagggagcttccggtgacgggtgcgaggatgagaatgtcctctgctcgcagtgg 886 | |||||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| Sbjct: 193 gtcaagcagggagcttccactgacgggtgcgaggatgagaacgtcctctgcccccagtgg 252 Query: 887 gctgccgttggggagtgcgccaagaaccccaactatatggtgggcacgaaggaagcacct 946 ||||| || |||||||| |||||||| || ||||| |||||||| || || ||||||||| Sbjct: 253 gctgcagtaggggagtgtgccaagaatccgaactacatggtgggtaccaatgaagcacct 312 Query: 947 ggcttctgcaggaagagctgcaacgtgtgcgtgcagtaagtt 988 ||||||||| ||||||||||||| ||||| | ||||||||| Sbjct: 313 ggcttctgccggaagagctgcaatgtgtgtgcacagtaagtt 354
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 315 bits (159), Expect = 2e-82 Identities = 276/315 (87%) Strand = Plus / Minus Query: 674 gtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgaca 733 ||||| || ||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||| Sbjct: 82400 gtaaaaccggtaaagggtgatgcccttctgttcttcagtctccaccccgatgcaacaaca 82341 Query: 734 gaccctgacagtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacg 793 ||| ||||||| |||||||||||||||| ||||| ||||| |||||||||||||| || Sbjct: 82340 gactctgacagcctgcacgggagctgcccggtcattgaaggtcagaagtggtccgcaact 82281 Query: 794 aaatggatccatgtgaggtccttcgaaaactcaggcaagcagggagcttccggtgacggg 853 |||||||||||||||||||||||||| | ||| | |||||||||||||||| ||||||| Sbjct: 82280 aaatggatccatgtgaggtccttcgacatctctgtcaagcagggagcttccactgacggg 82221 Query: 854 tgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgccaagaac 913 |||||||||||||| ||||||||| | ||||||||||| || |||||||| |||||||| Sbjct: 82220 tgcgaggatgagaacgtcctctgcccccagtgggctgcagtaggggagtgtgccaagaat 82161 Query: 914 cccaactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctgcaacgtg 973 || ||||| |||||||| || || |||||||||||||||||| ||||||||||||| ||| Sbjct: 82160 ccgaactacatggtgggtaccaatgaagcacctggcttctgccggaagagctgcaatgtg 82101 Query: 974 tgcgtgcagtaagtt 988 || | ||||||||| Sbjct: 82100 tgtgcacagtaagtt 82086 Score = 168 bits (85), Expect = 3e-38 Identities = 142/161 (88%) Strand = Plus / Minus Query: 440 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 499 |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 82923 aatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactat 82864 Query: 500 gattacttccatgacaaaaataaccaagctctcggtggtcaccgaatagcgacagtgctc 559 ||||||||||||||||||||||| |||||||| || || || || || || || |||||| Sbjct: 82863 gattacttccatgacaaaaataatcaagctcttggaggacatcggatcgccactgtgctc 82804 Query: 560 atgtacctgtctaacattgagaagggtggagagaccatctt 600 |||||||| || || ||| |||||| |||||||||||||| Sbjct: 82803 atgtacctttcagacgttgggaaggggggagagaccatctt 82763 Score = 121 bits (61), Expect = 6e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 274 ggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcca 333 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 85254 ggcgaaggacaagctggagaagtcgatggtggcggacaacgagtccgggaagagcgtcat 85195 Query: 334 gagcgaagtgcgaaccagctctggcatgtttctcgagaaga 374 |||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 85194 gagcgaggtgcggaccagctccggcatgttcctcgagaaga 85154 Score = 69.9 bits (35), Expect = 2e-08 Identities = 47/51 (92%) Strand = Plus / Minus Query: 218 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatc 268 ||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct: 85393 gcgttcctgcacaaggggttcctgacggacgcggagtgcgagcacctgatc 85343 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 377 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 432 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| Sbjct: 83079 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttcc 83024 Score = 52.0 bits (26), Expect = 0.005 Identities = 35/38 (92%) Strand = Plus / Minus Query: 179 gacccctcccgcgtcgtccagctctcgtggcaccccag 216 ||||| ||||||||||| ||||||||||||| |||||| Sbjct: 85537 gacccatcccgcgtcgtgcagctctcgtggcgccccag 85500 Score = 50.1 bits (25), Expect = 0.019 Identities = 52/61 (85%) Strand = Plus / Minus Query: 612 aggggaagttaacacaacacaaggatgagacggcatctgagtgtgctaaaaatggatatg 671 ||||||||||| ||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct: 82671 aggggaagttattacaacccaaggatgatacatggtctgactgtgctaaaaatggatatg 82612 Query: 672 c 672 | Sbjct: 82611 c 82611
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 315 bits (159), Expect = 2e-82 Identities = 276/315 (87%) Strand = Plus / Minus Query: 674 gtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgaca 733 ||||| || ||||| ||||| ||||| ||||||||||| |||||||| |||||||| ||| Sbjct: 13913774 gtaaaaccggtaaagggtgatgcccttctgttcttcagtctccaccccgatgcaacaaca 13913715 Query: 734 gaccctgacagtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacg 793 ||| ||||||| |||||||||||||||| ||||| ||||| |||||||||||||| || Sbjct: 13913714 gactctgacagcctgcacgggagctgcccggtcattgaaggtcagaagtggtccgcaact 13913655 Query: 794 aaatggatccatgtgaggtccttcgaaaactcaggcaagcagggagcttccggtgacggg 853 |||||||||||||||||||||||||| | ||| | |||||||||||||||| ||||||| Sbjct: 13913654 aaatggatccatgtgaggtccttcgacatctctgtcaagcagggagcttccactgacggg 13913595 Query: 854 tgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgccaagaac 913 |||||||||||||| ||||||||| | ||||||||||| || |||||||| |||||||| Sbjct: 13913594 tgcgaggatgagaacgtcctctgcccccagtgggctgcagtaggggagtgtgccaagaat 13913535 Query: 914 cccaactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctgcaacgtg 973 || ||||| |||||||| || || |||||||||||||||||| ||||||||||||| ||| Sbjct: 13913534 ccgaactacatggtgggtaccaatgaagcacctggcttctgccggaagagctgcaatgtg 13913475 Query: 974 tgcgtgcagtaagtt 988 || | ||||||||| Sbjct: 13913474 tgtgcacagtaagtt 13913460 Score = 168 bits (85), Expect = 3e-38 Identities = 142/161 (88%) Strand = Plus / Minus Query: 440 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 499 |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 13914297 aatggcgaatccattcaaatattacattatcagaatggcgagaagtatgagccacactat 13914238 Query: 500 gattacttccatgacaaaaataaccaagctctcggtggtcaccgaatagcgacagtgctc 559 ||||||||||||||||||||||| |||||||| || || || || || || || |||||| Sbjct: 13914237 gattacttccatgacaaaaataatcaagctcttggaggacatcggatcgccactgtgctc 13914178 Query: 560 atgtacctgtctaacattgagaagggtggagagaccatctt 600 |||||||| || || ||| |||||| |||||||||||||| Sbjct: 13914177 atgtacctttcagacgttgggaaggggggagagaccatctt 13914137 Score = 121 bits (61), Expect = 6e-24 Identities = 91/101 (90%) Strand = Plus / Minus Query: 274 ggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcca 333 ||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||| Sbjct: 13916628 ggcgaaggacaagctggagaagtcgatggtggcggacaacgagtccgggaagagcgtcat 13916569 Query: 334 gagcgaagtgcgaaccagctctggcatgtttctcgagaaga 374 |||||| ||||| |||||||| |||||||| |||||||||| Sbjct: 13916568 gagcgaggtgcggaccagctccggcatgttcctcgagaaga 13916528 Score = 69.9 bits (35), Expect = 2e-08 Identities = 47/51 (92%) Strand = Plus / Minus Query: 218 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatc 268 ||||||||||||||||||||||| |||||||||||||||| ||| ||||| Sbjct: 13916767 gcgttcctgcacaaggggttcctgacggacgcggagtgcgagcacctgatc 13916717 Score = 63.9 bits (32), Expect = 1e-06 Identities = 50/56 (89%) Strand = Plus / Minus Query: 377 caggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 432 ||||| ||||| ||||| | |||||||||||||||||| |||||||| |||||||| Sbjct: 13914453 caggacgaagttgtagctaggatagaggagaggattgcagcttggacgttccttcc 13914398 Score = 52.0 bits (26), Expect = 0.005 Identities = 35/38 (92%) Strand = Plus / Minus Query: 179 gacccctcccgcgtcgtccagctctcgtggcaccccag 216 ||||| ||||||||||| ||||||||||||| |||||| Sbjct: 13916911 gacccatcccgcgtcgtgcagctctcgtggcgccccag 13916874 Score = 50.1 bits (25), Expect = 0.019 Identities = 52/61 (85%) Strand = Plus / Minus Query: 612 aggggaagttaacacaacacaaggatgagacggcatctgagtgtgctaaaaatggatatg 671 ||||||||||| ||||| ||||||||| || ||||| ||||||||||||||||||| Sbjct: 13914045 aggggaagttattacaacccaaggatgatacatggtctgactgtgctaaaaatggatatg 13913986 Query: 672 c 672 | Sbjct: 13913985 c 13913985 Score = 44.1 bits (22), Expect = 1.2 Identities = 31/34 (91%) Strand = Plus / Plus Query: 480 agaagtatgagccacactacgattacttccatga 513 |||||||||| || |||| ||||||||||||||| Sbjct: 18468234 agaagtatgaacctcacttcgattacttccatga 18468267
>gb|AY108933.1| Zea mays PCO071536 mRNA sequence Length = 676 Score = 246 bits (124), Expect = 2e-61 Identities = 226/260 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccctaacgcagag 613 ||||| |||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 54 gtgctgatgtacctctctaatgttgagaagggtggagagaccatcttccccaatgcagag 113 Query: 614 gggaagttaacacaacacaaggatgagacggcatctgagtgtgctaaaaatggatatgct 673 |||||| || ||||| ||||| | || ||||| ||||| | |||||||||||| Sbjct: 114 gggaagctattacaaccgaaggacaacacttggtctgattgtgcaagaaatggatatgca 173 Query: 674 gtaaagcccgtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgaca 733 || || || ||||| ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct: 174 gttaaaccggtaaagggtgatgccctgctgttcttcagcctccatcctgatgcaacgaca 233 Query: 734 gaccctgacagtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacg 793 ||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| || Sbjct: 234 gactctgacagcttgcacggtagctgccccgtaatcgaaggccagaagtggtccgcaact 293 Query: 794 aaatggatccatgtgaggtc 813 |||||||||||||||||||| Sbjct: 294 aaatggatccatgtgaggtc 313 Score = 109 bits (55), Expect = 2e-20 Identities = 106/123 (86%) Strand = Plus / Plus Query: 847 tgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgc 906 |||||| |||||||| || ||| |||||||| | |||||||| || || || ||||| || Sbjct: 347 tgacggatgcgaggacgacaatatcctctgcccccagtgggcagctgtgggtgagtgtgc 406 Query: 907 caagaaccccaactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctg 966 ||||||||| ||||| |||||||| || |||||||| |||||||||||| |||||||||| Sbjct: 407 caagaaccctaactacatggtggggaccaaggaagctcctggcttctgccggaagagctg 466 Query: 967 caa 969 ||| Sbjct: 467 caa 469
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 188 bits (95), Expect = 3e-44 Identities = 122/131 (93%) Strand = Plus / Plus Query: 683 gtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgacagaccctgac 742 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 25318 gtaaagggtgatgccctgctgttcttcagcctccatcctgatgcaacgacagactctgac 25377 Query: 743 agtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatc 802 || |||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 25378 agcttgcacggtagctgccccgtaatcgaaggccagaagtggtccgcaactaaatggatc 25437 Query: 803 catgtgaggtc 813 ||||||||||| Sbjct: 25438 catgtgaggtc 25448 Score = 141 bits (71), Expect = 7e-30 Identities = 149/175 (85%) Strand = Plus / Plus Query: 440 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 499 |||||||| |||||||| |||||||| || ||||||||||||| ||||| || |||||| Sbjct: 24778 aatggcgaatccattcagatattacactaccagaatggtgagaaatatgaaccccactac 24837 Query: 500 gattacttccatgacaaaaataaccaagctctcggtggtcaccgaatagcgacagtgctc 559 || ||||||||||||||||| || ||||| | ||||| || || || || || ||||| Sbjct: 24838 gactacttccatgacaaaaaaaatcaagccttgggtggccatcgcatcgccactgtgctg 24897 Query: 560 atgtacctgtctaacattgagaagggtggagagaccatcttccctaacgcagagg 614 |||||||| ||||| |||||||||||||||||||||||||||| || ||||||| Sbjct: 24898 atgtacctctctaatgttgagaagggtggagagaccatcttccccaatgcagagg 24952 Score = 89.7 bits (45), Expect = 2e-14 Identities = 93/109 (85%) Strand = Plus / Plus Query: 847 tgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgc 906 |||||| |||||||| || ||| |||||||| | |||||||| || || || ||||| || Sbjct: 25482 tgacggatgcgaggacgacaatatcctctgcccccagtgggcagctgtgggtgagtgtgc 25541 Query: 907 caagaaccccaactatatggtgggcacgaaggaagcacctggcttctgc 955 ||||||||| ||||| |||||||| || |||||||| |||||||||||| Sbjct: 25542 caagaaccctaactacatggtggggaccaaggaagctcctggcttctgc 25590 Score = 83.8 bits (42), Expect = 1e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 278 aaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagc 337 ||||||||||| |||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 5629 aaggacaagctggagaagtctatggtggccgataacgagtccggtaagagtgtccagagt 5688 Query: 338 gaagtgcgaaccagctctggcatgtttctcgaga 371 || ||||| |||||||| |||||||| ||||||| Sbjct: 5689 gaggtgcgcaccagctccggcatgttcctcgaga 5722 Score = 67.9 bits (34), Expect = 8e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 218 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatcgagctgg 275 ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| ||||| Sbjct: 5480 gcgttcctgcacaagggtttcctgtcggatgcggagtgcgaccacctcatcgcgctgg 5537 Score = 52.0 bits (26), Expect = 0.005 Identities = 50/58 (86%) Strand = Plus / Plus Query: 375 gtcaggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 432 ||||||||||||||||| | | |||||||||||||| |||||||||| || ||||| Sbjct: 24607 gtcaggatgaagtagtaacgagaatagaggagaggatatctgcttggacatttcttcc 24664
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 188 bits (95), Expect = 3e-44 Identities = 122/131 (93%) Strand = Plus / Plus Query: 683 gtaaaaggtgacgccctgctgttcttcagcctccaccctgatgcaacgacagaccctgac 742 ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||| Sbjct: 27975 gtaaagggtgatgccctgctgttcttcagcctccatcctgatgcaacgacagactctgac 28034 Query: 743 agtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatc 802 || |||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 28035 agcttgcacggtagctgccccgtaatcgaaggccagaagtggtccgcaactaaatggatc 28094 Query: 803 catgtgaggtc 813 ||||||||||| Sbjct: 28095 catgtgaggtc 28105 Score = 141 bits (71), Expect = 7e-30 Identities = 149/175 (85%) Strand = Plus / Plus Query: 440 aatggcgagtccattcaaatattacattataagaatggtgagaagtatgagccacactac 499 |||||||| |||||||| |||||||| || ||||||||||||| ||||| || |||||| Sbjct: 27435 aatggcgaatccattcagatattacactaccagaatggtgagaaatatgaaccccactac 27494 Query: 500 gattacttccatgacaaaaataaccaagctctcggtggtcaccgaatagcgacagtgctc 559 || ||||||||||||||||| || ||||| | ||||| || || || || || ||||| Sbjct: 27495 gactacttccatgacaaaaaaaatcaagccttgggtggccatcgcatcgccactgtgctg 27554 Query: 560 atgtacctgtctaacattgagaagggtggagagaccatcttccctaacgcagagg 614 |||||||| ||||| |||||||||||||||||||||||||||| || ||||||| Sbjct: 27555 atgtacctctctaatgttgagaagggtggagagaccatcttccccaatgcagagg 27609 Score = 109 bits (55), Expect = 2e-20 Identities = 106/123 (86%) Strand = Plus / Plus Query: 847 tgacgggtgcgaggatgagaatgtcctctgctcgcagtgggctgccgttggggagtgcgc 906 |||||| |||||||| || ||| |||||||| | |||||||| || || || ||||| || Sbjct: 28139 tgacggatgcgaggacgacaatatcctctgcccccagtgggcagctgtgggtgagtgtgc 28198 Query: 907 caagaaccccaactatatggtgggcacgaaggaagcacctggcttctgcaggaagagctg 966 ||||||||| ||||| |||||||| || |||||||| |||||||||||| |||||||||| Sbjct: 28199 caagaaccctaactacatggtggggaccaaggaagctcctggcttctgccggaagagctg 28258 Query: 967 caa 969 ||| Sbjct: 28259 caa 28261 Score = 83.8 bits (42), Expect = 1e-12 Identities = 81/94 (86%) Strand = Plus / Plus Query: 278 aaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagc 337 ||||||||||| |||||||| |||||||| || || ||||| || ||||| |||||||| Sbjct: 8301 aaggacaagctggagaagtctatggtggccgataacgagtccggtaagagtgtccagagt 8360 Query: 338 gaagtgcgaaccagctctggcatgtttctcgaga 371 || ||||| |||||||| |||||||| ||||||| Sbjct: 8361 gaggtgcgcaccagctccggcatgttcctcgaga 8394 Score = 67.9 bits (34), Expect = 8e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 218 gcgttcctgcacaaggggttcctctcggacgcggagtgcgaccacatgatcgagctgg 275 ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||| ||||| Sbjct: 8152 gcgttcctgcacaagggtttcctgtcggatgcggagtgcgaccacctcatcgcgctgg 8209 Score = 52.0 bits (26), Expect = 0.005 Identities = 50/58 (86%) Strand = Plus / Plus Query: 375 gtcaggatgaagtagtagcaatgatagaggagaggattgctgcttggactttccttcc 432 ||||||||||||||||| | | |||||||||||||| |||||||||| || ||||| Sbjct: 27264 gtcaggatgaagtagtaacgagaatagaggagaggatatctgcttggacatttcttcc 27321
>ref|NM_001058144.1| Oryza sativa (japonica cultivar-group) Os03g0803400 (Os03g0803400) mRNA, complete cds Length = 933 Score = 89.7 bits (45), Expect = 2e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 251 gagtgcgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggac 310 |||||||||||| | || || ||| |||||| ||||| ||| ||| |||||||| ||| Sbjct: 202 gagtgcgaccaccttgtcaagttggggaaggagaagctgaagaggtccatggtggcagac 261 Query: 311 aatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctctggcatgtt 363 ||||||||||||||||| || |||||||||||| ||||||||||||||||| Sbjct: 262 aatgagtcgggaaagagtgttatgagcgaagtgcgcaccagctctggcatgtt 314
>ref|NM_001065648.1| Oryza sativa (japonica cultivar-group) Os07g0194500 (Os07g0194500) mRNA, complete cds Length = 1125 Score = 85.7 bits (43), Expect = 3e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 228 acaaggggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagc 287 |||||||||||||||| |||| |||||||||||| | || |||||| |||| ||| Sbjct: 265 acaaggggttcctctccgacgacgagtgcgaccacctcgtcaagctggggaagaggaaga 324 Query: 288 ttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaa 347 | ||| |||||||||||||||||| |||| || ||||||||| |||||| ||||| | Sbjct: 325 tgcagaggtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcgga 384 Query: 348 ccagctctggcatgtttctcgagaagagtcaggat 382 ||||||| |||||||| ||||| ||| | |||||| Sbjct: 385 ccagctccggcatgttcctcgacaagcgccaggat 419 Score = 42.1 bits (21), Expect = 4.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 480 agaagtatgagccacactacgattacttccatgacaa 516 ||||||||||||| |||| ||||| ||||||||||| Sbjct: 517 agaagtatgagccgcactttgattatttccatgacaa 553
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Minus Query: 277 gaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagag 336 |||||| ||||| ||| ||| |||||||| |||||||||||||||||||| || ||| Sbjct: 33307832 gaaggagaagctgaagaggtccatggtggcagacaatgagtcgggaaagagtgttatgag 33307773 Query: 337 cgaagtgcgaaccagctctggcatgtt 363 ||||||||| ||||||||||||||||| Sbjct: 33307772 cgaagtgcgcaccagctctggcatgtt 33307746 Score = 73.8 bits (37), Expect = 1e-09 Identities = 61/69 (88%) Strand = Plus / Plus Query: 747 tgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatccatg 806 ||||||| |||||||| ||||| ||||| |||||||||| || |||||||||||||||| Sbjct: 3553383 tgcacggaagctgccctgtcatacaaggcgagaagtggtcggcgacgaaatggatccatg 3553442 Query: 807 tgaggtcct 815 |||| |||| Sbjct: 3553443 tgagatcct 3553451 Score = 65.9 bits (33), Expect = 3e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 214 cagagcgttcctgcacaaggggttcctctcggacgcggagtgcgaccac 262 ||||||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 3548789 cagagcgttcctgtacgaggggttcctgtcggatgcggagtgcgaccac 3548837 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 378 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 |||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 3552662 aggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 3552707 Score = 52.0 bits (26), Expect = 0.005 Identities = 41/46 (89%) Strand = Plus / Plus Query: 378 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 |||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 3549610 aggatgaagttgttgcaagaatagaggagaggattgcggcttggac 3549655 Score = 50.1 bits (25), Expect = 0.019 Identities = 73/89 (82%) Strand = Plus / Plus Query: 884 tgggctgccgttggggagtgcgccaagaaccccaactatatggtgggcacgaaggaagca 943 |||||||| | ||| ||||| |||||||||||| || ||||| ||||| | ||| | Sbjct: 3553514 tgggctgctgctggagagtgtgccaagaaccccggttacatggtcggcaccagtgaatcc 3553573 Query: 944 cctggcttctgcaggaagagctgcaacgt 972 |||||||||||| ||||||| |||||||| Sbjct: 3553574 cctggcttctgccggaagagttgcaacgt 3553602 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Minus Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgt 807 ||||||||| |||| ||||| || ||||||||||||||||| Sbjct: 33309574 atcgaaggcgagaaatggtctgcaacgaaatggatccatgt 33309534 Score = 46.1 bits (23), Expect = 0.30 Identities = 44/51 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccct 604 ||||||||||||||||| || | ||| |||||| ||||||||||||||| Sbjct: 3549903 gtgctcatgtacctgtccaatgtcaagatgggtggtgagaccatcttccct 3549953 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccc 603 ||||||||||||||||| || | ||| ||||||||||||| ||||||| Sbjct: 3552955 gtgctcatgtacctgtccaatgtcaagatgggtggagagaccgtcttccc 3553004 Score = 42.1 bits (21), Expect = 4.6 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Plus Query: 853 gtgcgaggatgagaatgtcctctgctcgcag-tgggctgccgttggggagtgcgccaaga 911 |||||||||||| |||| |||||||| ||| |||||||||| || ||||| ||||||| Sbjct: 3550597 gtgcgaggatgaacatgttctctgctc-cagctgggctgccgcaggagagtgtgccaaga 3550655 Query: 912 acccc 916 ||||| Sbjct: 3550656 acccc 3550660 Score = 42.1 bits (21), Expect = 4.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 944 cctggcttctgcaggaagagctgcaacgt 972 |||||||||||| ||||||| |||||||| Sbjct: 3550691 cctggcttctgccggaagagttgcaacgt 3550719
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 85.7 bits (43), Expect = 3e-13 Identities = 76/87 (87%) Strand = Plus / Plus Query: 277 gaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagag 336 |||||| ||||| ||| ||| |||||||| |||||||||||||||||||| || ||| Sbjct: 27233 gaaggagaagctgaagaggtccatggtggcagacaatgagtcgggaaagagtgttatgag 27292 Query: 337 cgaagtgcgaaccagctctggcatgtt 363 ||||||||| ||||||||||||||||| Sbjct: 27293 cgaagtgcgcaccagctctggcatgtt 27319 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Plus Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgt 807 ||||||||| |||| ||||| || ||||||||||||||||| Sbjct: 25491 atcgaaggcgagaaatggtctgcaacgaaatggatccatgt 25531
>dbj|AK121816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098K22, full insert sequence Length = 1126 Score = 85.7 bits (43), Expect = 3e-13 Identities = 127/155 (81%) Strand = Plus / Plus Query: 228 acaaggggttcctctcggacgcggagtgcgaccacatgatcgagctggcgaaggacaagc 287 |||||||||||||||| |||| |||||||||||| | || |||||| |||| ||| Sbjct: 266 acaaggggttcctctccgacgacgagtgcgaccacctcgtcaagctggggaagaggaaga 325 Query: 288 ttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaa 347 | ||| |||||||||||||||||| |||| || ||||||||| |||||| ||||| | Sbjct: 326 tgcagaggtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcgga 385 Query: 348 ccagctctggcatgtttctcgagaagagtcaggat 382 ||||||| |||||||| ||||| ||| | |||||| Sbjct: 386 ccagctccggcatgttcctcgacaagcgccaggat 420 Score = 42.1 bits (21), Expect = 4.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 480 agaagtatgagccacactacgattacttccatgacaa 516 ||||||||||||| |||| ||||| ||||||||||| Sbjct: 518 agaagtatgagccgcactttgattatttccatgacaa 554
>ref|NM_001055608.1| Oryza sativa (japonica cultivar-group) Os03g0166200 (Os03g0166200) mRNA, complete cds Length = 951 Score = 73.8 bits (37), Expect = 1e-09 Identities = 61/69 (88%) Strand = Plus / Plus Query: 747 tgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatccatg 806 ||||||| |||||||| ||||| ||||| |||||||||| || |||||||||||||||| Sbjct: 719 tgcacggaagctgccctgtcatacaaggcgagaagtggtcggcgacgaaatggatccatg 778 Query: 807 tgaggtcct 815 |||| |||| Sbjct: 779 tgagatcct 787 Score = 61.9 bits (31), Expect = 5e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 377 caggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 ||||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 298 caggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 344 Score = 50.1 bits (25), Expect = 0.019 Identities = 73/89 (82%) Strand = Plus / Plus Query: 884 tgggctgccgttggggagtgcgccaagaaccccaactatatggtgggcacgaaggaagca 943 |||||||| | ||| ||||| |||||||||||| || ||||| ||||| | ||| | Sbjct: 850 tgggctgctgctggagagtgtgccaagaaccccggttacatggtcggcaccagtgaatcc 909 Query: 944 cctggcttctgcaggaagagctgcaacgt 972 |||||||||||| ||||||| |||||||| Sbjct: 910 cctggcttctgccggaagagttgcaacgt 938 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccc 603 ||||||||||||||||| || | ||| ||||||||||||| ||||||| Sbjct: 526 gtgctcatgtacctgtccaatgtcaagatgggtggagagaccgtcttccc 575
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 73.8 bits (37), Expect = 1e-09 Identities = 61/69 (88%) Strand = Plus / Plus Query: 747 tgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatccatg 806 ||||||| |||||||| ||||| ||||| |||||||||| || |||||||||||||||| Sbjct: 70925 tgcacggaagctgccctgtcatacaaggcgagaagtggtcggcgacgaaatggatccatg 70984 Query: 807 tgaggtcct 815 |||| |||| Sbjct: 70985 tgagatcct 70993 Score = 65.9 bits (33), Expect = 3e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 214 cagagcgttcctgcacaaggggttcctctcggacgcggagtgcgaccac 262 ||||||||||||| || |||||||||| ||||| ||||||||||||||| Sbjct: 66331 cagagcgttcctgtacgaggggttcctgtcggatgcggagtgcgaccac 66379 Score = 60.0 bits (30), Expect = 2e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 378 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 |||||||||| || |||| |||||||||||||||||||||||||| Sbjct: 70204 aggatgaagtcgttgcaagaatagaggagaggattgctgcttggac 70249 Score = 52.0 bits (26), Expect = 0.005 Identities = 41/46 (89%) Strand = Plus / Plus Query: 378 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 |||||||||| || |||| ||||||||||||||||| |||||||| Sbjct: 67152 aggatgaagttgttgcaagaatagaggagaggattgcggcttggac 67197 Score = 50.1 bits (25), Expect = 0.019 Identities = 73/89 (82%) Strand = Plus / Plus Query: 884 tgggctgccgttggggagtgcgccaagaaccccaactatatggtgggcacgaaggaagca 943 |||||||| | ||| ||||| |||||||||||| || ||||| ||||| | ||| | Sbjct: 71056 tgggctgctgctggagagtgtgccaagaaccccggttacatggtcggcaccagtgaatcc 71115 Query: 944 cctggcttctgcaggaagagctgcaacgt 972 |||||||||||| ||||||| |||||||| Sbjct: 71116 cctggcttctgccggaagagttgcaacgt 71144 Score = 46.1 bits (23), Expect = 0.30 Identities = 44/51 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccct 604 ||||||||||||||||| || | ||| |||||| ||||||||||||||| Sbjct: 67445 gtgctcatgtacctgtccaatgtcaagatgggtggtgagaccatcttccct 67495 Score = 44.1 bits (22), Expect = 1.2 Identities = 43/50 (86%) Strand = Plus / Plus Query: 554 gtgctcatgtacctgtctaacattgagaagggtggagagaccatcttccc 603 ||||||||||||||||| || | ||| ||||||||||||| ||||||| Sbjct: 70497 gtgctcatgtacctgtccaatgtcaagatgggtggagagaccgtcttccc 70546 Score = 42.1 bits (21), Expect = 4.6 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Plus Query: 853 gtgcgaggatgagaatgtcctctgctcgcag-tgggctgccgttggggagtgcgccaaga 911 |||||||||||| |||| |||||||| ||| |||||||||| || ||||| ||||||| Sbjct: 68139 gtgcgaggatgaacatgttctctgctc-cagctgggctgccgcaggagagtgtgccaaga 68197 Query: 912 acccc 916 ||||| Sbjct: 68198 acccc 68202 Score = 42.1 bits (21), Expect = 4.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 944 cctggcttctgcaggaagagctgcaacgt 972 |||||||||||| ||||||| |||||||| Sbjct: 68233 cctggcttctgccggaagagttgcaacgt 68261
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 69.9 bits (35), Expect = 2e-08 Identities = 65/75 (86%) Strand = Plus / Minus Query: 295 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 354 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 5150888 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 5150829 Query: 355 tggcatgtttctcga 369 |||||||| ||||| Sbjct: 5150828 cggcatgttcctcga 5150814 Score = 46.1 bits (23), Expect = 0.30 Identities = 32/35 (91%) Strand = Plus / Minus Query: 228 acaaggggttcctctcggacgcggagtgcgaccac 262 |||||||||||||||| |||| |||||||||||| Sbjct: 5151041 acaaggggttcctctccgacgacgagtgcgaccac 5151007 Score = 42.1 bits (21), Expect = 4.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 480 agaagtatgagccacactacgattacttccatgacaa 516 ||||||||||||| |||| ||||| ||||||||||| Sbjct: 5149640 agaagtatgagccgcactttgattatttccatgacaa 5149604
>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1715_A07 Length = 130907 Score = 69.9 bits (35), Expect = 2e-08 Identities = 65/75 (86%) Strand = Plus / Minus Query: 295 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 354 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 17602 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 17543 Query: 355 tggcatgtttctcga 369 |||||||| ||||| Sbjct: 17542 cggcatgttcctcga 17528 Score = 46.1 bits (23), Expect = 0.30 Identities = 32/35 (91%) Strand = Plus / Minus Query: 228 acaaggggttcctctcggacgcggagtgcgaccac 262 |||||||||||||||| |||| |||||||||||| Sbjct: 17755 acaaggggttcctctccgacgacgagtgcgaccac 17721 Score = 42.1 bits (21), Expect = 4.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 480 agaagtatgagccacactacgattacttccatgacaa 516 ||||||||||||| |||| ||||| ||||||||||| Sbjct: 16354 agaagtatgagccgcactttgattatttccatgacaa 16318
>dbj|AP003743.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_E12 Length = 119691 Score = 69.9 bits (35), Expect = 2e-08 Identities = 65/75 (86%) Strand = Plus / Minus Query: 295 gtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtgcgaaccagctc 354 |||||||||||||||||| |||| || ||||||||| |||||| ||||| |||||||| Sbjct: 107055 gtcgatggtggcggacaacaagtccggcaagagcgtcatgagcgaggtgcggaccagctc 106996 Query: 355 tggcatgtttctcga 369 |||||||| ||||| Sbjct: 106995 cggcatgttcctcga 106981 Score = 46.1 bits (23), Expect = 0.30 Identities = 32/35 (91%) Strand = Plus / Minus Query: 228 acaaggggttcctctcggacgcggagtgcgaccac 262 |||||||||||||||| |||| |||||||||||| Sbjct: 107208 acaaggggttcctctccgacgacgagtgcgaccac 107174 Score = 42.1 bits (21), Expect = 4.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 480 agaagtatgagccacactacgattacttccatgacaa 516 ||||||||||||| |||| ||||| ||||||||||| Sbjct: 105807 agaagtatgagccgcactttgattatttccatgacaa 105771
>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete cds Length = 1201 Score = 63.9 bits (32), Expect = 1e-06 Identities = 128/160 (80%) Strand = Plus / Plus Query: 273 tggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtcc 332 |||| ||||| ||| | ||||||||||||||||| || |||||||| || ||||| | | Sbjct: 302 tggcaaaggataagttagagaagtcgatggtggcagataatgagtctggtaagagtatac 361 Query: 333 agagcgaagtgcgaaccagctctggcatgtttctcgagaagagtcaggatgaagtagtag 392 |||||| || || || || ||||||||||||||| | ||| |||||||| ||||| | Sbjct: 362 cgagcgaggttcgcacgagttctggcatgtttctccaaaaggcgcaggatgatgtagttg 421 Query: 393 caatgatagaggagaggattgctgcttggactttccttcc 432 | || |||| || ||||||||||||||||||||||| Sbjct: 422 ctgcaatcgaggcaagaattgctgcttggactttccttcc 461 Score = 52.0 bits (26), Expect = 0.005 Identities = 62/74 (83%) Strand = Plus / Plus Query: 743 agtttgcacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatc 802 ||||||||||| |||||||| || || ||||| | || ||||| || |||||||||||| Sbjct: 772 agtttgcacggtagctgccctgtaattgaaggtgaaaaatggtcagcaacgaaatggatc 831 Query: 803 catgtgaggtcctt 816 ||||| ||||||| Sbjct: 832 catgttcggtcctt 845
>gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence Length = 1150 Score = 61.9 bits (31), Expect = 5e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 749 cacgggagctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatccatgtg 808 |||||||||||||| || ||||| ||| |||| ||||| || |||||||||||||| || Sbjct: 737 cacgggagctgcccggtgatcgagggcgagaaatggtcggcgacgaaatggatccacgtc 796 Query: 809 aggtccttcga 819 ||||| ||||| Sbjct: 797 aggtcgttcga 807 Score = 52.0 bits (26), Expect = 0.005 Identities = 56/66 (84%) Strand = Plus / Plus Query: 197 cagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtgc 256 |||||||| | || |||||| ||||||||| ||| || |||||||||||| | |||||| Sbjct: 185 cagctctcctcgcgccccagggcgttcctgtacagcggcttcctctcggacaccgagtgc 244 Query: 257 gaccac 262 |||||| Sbjct: 245 gaccac 250
>ref|NM_001058145.1| Oryza sativa (japonica cultivar-group) Os03g0803500 (Os03g0803500) mRNA, complete cds Length = 1114 Score = 56.0 bits (28), Expect = 3e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 196 ccagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtg 255 |||||| || |||| |||||| ||||||||| ||| || ||||||||| ||| ||||| Sbjct: 128 ccagctatcctggcgccccagggcgttcctgtacagcggcttcctctcgcacgacgagtg 187 Query: 256 cgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggacaatga 315 ||||||| | || | |||||||||| | | | |||||||||||||| || |||||||| Sbjct: 188 cgaccacctcgtcaatctggcgaaggggaggatggagaagtcgatggttgcagacaatga 247 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Plus Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgt 807 ||||||||| |||| ||||| || ||||||||||||||||| Sbjct: 699 atcgaaggcgagaaatggtctgcaacgaaatggatccatgt 739
>emb|CT988731.1| Eucalyptus globulus EST from juvenile versus mature wood and mature versus juvenile wood SSH libraries Length = 492 Score = 56.0 bits (28), Expect = 3e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 272 ctggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagag 327 ||||||| ||||||| | |||||||| |||||||| ||||| || ||||||||||| Sbjct: 342 ctggcgagggacaagttggagaagtccatggtggctgacaacgaatcgggaaagag 397
>emb|CT988806.1| Eucalyptus globulus EST from juvenile versus mature wood and mature versus juvenile wood SSH libraries Length = 454 Score = 56.0 bits (28), Expect = 3e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 272 ctggcgaaggacaagcttgagaagtcgatggtggcggacaatgagtcgggaaagag 327 ||||||| ||||||| | |||||||| |||||||| ||||| || ||||||||||| Sbjct: 188 ctggcgagggacaagttggagaagtccatggtggctgacaacgaatcgggaaagag 133
>dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full insert sequence Length = 1114 Score = 56.0 bits (28), Expect = 3e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 196 ccagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtg 255 |||||| || |||| |||||| ||||||||| ||| || ||||||||| ||| ||||| Sbjct: 128 ccagctatcctggcgccccagggcgttcctgtacagcggcttcctctcgcacgacgagtg 187 Query: 256 cgaccacatgatcgagctggcgaaggacaagcttgagaagtcgatggtggcggacaatga 315 ||||||| | || | |||||||||| | | | |||||||||||||| || |||||||| Sbjct: 188 cgaccacctcgtcaatctggcgaaggggaggatggagaagtcgatggttgcagacaatga 247 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Plus Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgt 807 ||||||||| |||| ||||| || ||||||||||||||||| Sbjct: 699 atcgaaggcgagaaatggtctgcaacgaaatggatccatgt 739
>gb|DQ244653.1| Zea mays clone 9929 mRNA sequence Length = 1350 Score = 52.0 bits (26), Expect = 0.005 Identities = 38/42 (90%) Strand = Plus / Plus Query: 467 tataagaatggtgagaagtatgagccacactacgattacttc 508 |||||| |||| ||||||||||| |||||||| ||||||||| Sbjct: 547 tataagcatggggagaagtatgaaccacactatgattacttc 588
>gb|AC126941.3| Mus musculus BAC clone RP23-133N24 from chromosome 7, complete sequence Length = 196621 Score = 52.0 bits (26), Expect = 0.005 Identities = 26/26 (100%) Strand = Plus / Plus Query: 82 ggccatggctctttccctcctcctca 107 |||||||||||||||||||||||||| Sbjct: 80624 ggccatggctctttccctcctcctca 80649
>gb|AY108734.1| Zea mays PCO107217 mRNA sequence Length = 1418 Score = 52.0 bits (26), Expect = 0.005 Identities = 38/42 (90%) Strand = Plus / Plus Query: 467 tataagaatggtgagaagtatgagccacactacgattacttc 508 |||||| |||| ||||||||||| |||||||| ||||||||| Sbjct: 613 tataagcatggggagaagtatgaaccacactatgattacttc 654
>emb|CT830435.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA103C06, full insert sequence Length = 1104 Score = 50.1 bits (25), Expect = 0.019 Identities = 37/41 (90%) Strand = Plus / Plus Query: 767 atcgaaggccagaagtggtccgccacgaaatggatccatgt 807 ||||||||| |||| ||||| || ||||||||||||||||| Sbjct: 689 atcgaaggcgagaaatggtctgcaacgaaatggatccatgt 729 Score = 46.1 bits (23), Expect = 0.30 Identities = 56/67 (83%) Strand = Plus / Plus Query: 196 ccagctctcgtggcaccccagagcgttcctgcacaaggggttcctctcggacgcggagtg 255 |||||| || |||| |||||| ||||||||| ||| || ||||||||| ||| ||||| Sbjct: 124 ccagctatcctggcgccccagggcgttcctgtacagcggcttcctctcgcacgacgagtg 183 Query: 256 cgaccac 262 ||||||| Sbjct: 184 cgaccac 190
>gb|AC147499.5| Medicago truncatula clone mth2-22h5, complete sequence Length = 128625 Score = 48.1 bits (24), Expect = 0.075 Identities = 36/40 (90%) Strand = Plus / Minus Query: 276 cgaaggacaagcttgagaagtcgatggtggcggacaatga 315 ||||||| ||||| |||||||| ||||||||||| ||||| Sbjct: 65043 cgaaggataagctggagaagtctatggtggcggataatga 65004
>gb|AY110013.1| Zea mays CL32377_1 mRNA sequence Length = 840 Score = 48.1 bits (24), Expect = 0.075 Identities = 42/48 (87%) Strand = Plus / Minus Query: 755 agctgccccgtcatcgaaggccagaagtggtccgccacgaaatggatc 802 ||||||||||||||| ||||| |||| ||| |||||| ||||||||| Sbjct: 230 agctgccccgtcatcaaaggcgagaaatgggtcgccaccaaatggatc 183
>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone KBrH097M21, complete sequence Length = 131063 Score = 48.1 bits (24), Expect = 0.075 Identities = 66/80 (82%) Strand = Plus / Plus Query: 284 aagcttgagaagtcgatggtggcggacaatgagtcgggaaagagcgtccagagcgaagtg 343 |||||||||||||| ||||| ||||| ||||| || || ||||||| |||| ||||| Sbjct: 129655 aagcttgagaagtctatggttgcggataatgactctggtgagagcgttgagagtgaagta 129714 Query: 344 cgaaccagctctggcatgtt 363 || || |||||||| ||||| Sbjct: 129715 cgcacaagctctggaatgtt 129734
>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2 Contains a novel gene, the 5' end of the PLAC3 gene for placenta-specific 3 (PLAC3) and a protein tyrosine phosphatase type IVA (member 1) (PTP4A1) pseudogene, complete sequence Length = 168835 Score = 46.1 bits (23), Expect = 0.30 Identities = 23/23 (100%) Strand = Plus / Minus Query: 82 ggccatggctctttccctcctcc 104 ||||||||||||||||||||||| Sbjct: 22134 ggccatggctctttccctcctcc 22112
>ref|NM_001071497.1| Oryza sativa (japonica cultivar-group) Os10g0497800 (Os10g0497800) mRNA, complete cds Length = 1371 Score = 44.1 bits (22), Expect = 1.2 Identities = 31/34 (91%) Strand = Plus / Plus Query: 480 agaagtatgagccacactacgattacttccatga 513 |||||||||| || |||| ||||||||||||||| Sbjct: 708 agaagtatgaacctcacttcgattacttccatga 741
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 cgcgcttcacctcaccgctgcg 133 |||||||||||||||||||||| Sbjct: 1187566 cgcgcttcacctcaccgctgcg 1187587
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 44.1 bits (22), Expect = 1.2 Identities = 31/34 (91%) Strand = Plus / Minus Query: 480 agaagtatgagccacactacgattacttccatga 513 |||||||||| || |||| ||||||||||||||| Sbjct: 38459 agaagtatgaacctcacttcgattacttccatga 38426
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Minus Query: 112 cgcgcttcacctcaccgctgcg 133 |||||||||||||||||||||| Sbjct: 259410 cgcgcttcacctcaccgctgcg 259389
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 44.1 bits (22), Expect = 1.2 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 cgcgcttcacctcaccgctgcg 133 |||||||||||||||||||||| Sbjct: 2503496 cgcgcttcacctcaccgctgcg 2503517
>dbj|AK120584.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136I05, full insert sequence Length = 1373 Score = 44.1 bits (22), Expect = 1.2 Identities = 31/34 (91%) Strand = Plus / Plus Query: 480 agaagtatgagccacactacgattacttccatga 513 |||||||||| || |||| ||||||||||||||| Sbjct: 710 agaagtatgaacctcacttcgattacttccatga 743
>gb|AY111882.1| Zea mays CL56202_1 mRNA sequence Length = 697 Score = 44.1 bits (22), Expect = 1.2 Identities = 40/46 (86%) Strand = Plus / Minus Query: 378 aggatgaagtagtagcaatgatagaggagaggattgctgcttggac 423 |||||||||||||| | | |||||||||||||| |||||||||| Sbjct: 46 aggatgaagtagtaacgagaatagaggagaggatatctgcttggac 1
>gb|AC188545.11| Canis Familiaris chromosome 31, clone XX-465B17, complete sequence Length = 199031 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 ggccatggctctttccctcct 102 ||||||||||||||||||||| Sbjct: 133246 ggccatggctctttccctcct 133266
>ref|NM_001073116.1| Oryza sativa (japonica cultivar-group) Os12g0285100 (Os12g0285100) mRNA, complete cds Length = 3389 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 1 ctttccctcctcctcatcctc 21
>gb|AC189361.1| Brassica rapa subsp. pekinensis clone KBrB045I12, complete sequence Length = 90316 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 gtacctgtctaacattgagaa 582 ||||||||||||||||||||| Sbjct: 85135 gtacctgtctaacattgagaa 85155
>dbj|AK228084.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-57-B13 Length = 794 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 accatcttccctaacgcagag 613 ||||||||||||||||||||| Sbjct: 17 accatcttccctaacgcagag 37
>ref|NM_118564.2| Arabidopsis thaliana unknown protein (AT4G24310) mRNA, complete cds Length = 783 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 accatcttccctaacgcagag 613 ||||||||||||||||||||| Sbjct: 16 accatcttccctaacgcagag 36
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1179 catacttttatagtatttctg 1199 ||||||||||||||||||||| Sbjct: 174529 catacttttatagtatttctg 174549
>gb|AY505071.1| Newcastle disease virus strain gamefowl/U.S.(CA)/211472/02 RNA-dependent RNA polymerase (L) gene, complete cds Length = 6615 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1110 aagtggtagcccagttaattt 1130 ||||||||||||||||||||| Sbjct: 120 aagtggtagcccagttaattt 100
>gb|AY562987.1| Newcastle disease virus isolate gamefowl/U.S.(CA)/211472/02, complete genome Length = 15192 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1110 aagtggtagcccagttaattt 1130 ||||||||||||||||||||| Sbjct: 8506 aagtggtagcccagttaattt 8486
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 504 acttccatgacaaaaataacc 524 ||||||||||||||||||||| Sbjct: 4885964 acttccatgacaaaaataacc 4885944
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 10821565 ctttccctcctcctcatcctc 10821585
>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61 Length = 198402 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 accatcttccctaacgcagag 613 ||||||||||||||||||||| Sbjct: 68616 accatcttccctaacgcagag 68636
>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project) Length = 108459 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 accatcttccctaacgcagag 613 ||||||||||||||||||||| Sbjct: 51959 accatcttccctaacgcagag 51979
>gb|L76354.1|AGG18SRA Argas lahorensis 18S ribosomal RNA (18S rRNA) gene Length = 1789 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 151 aagcgtcgccggccgtagccg 171 ||||||||||||||||||||| Sbjct: 284 aagcgtcgccggccgtagccg 264
>emb|AL954739.9| Zebrafish DNA sequence from clone CH211-192K9 in linkage group 20, complete sequence Length = 154604 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 atggctctttccctcctcctc 106 ||||||||||||||||||||| Sbjct: 72532 atggctctttccctcctcctc 72512
>gb|BT004778.1| Arabidopsis thaliana At4g24310 gene, complete cds Length = 642 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 593 accatcttccctaacgcagag 613 ||||||||||||||||||||| Sbjct: 9 accatcttccctaacgcagag 29
>dbj|AB113399.1| Rattus norvegicus rCNR gene for cadherin-related neuronal receptor, exon cluster Length = 249555 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 attacttccatgacaaaaata 521 ||||||||||||||||||||| Sbjct: 247774 attacttccatgacaaaaata 247754
>dbj|AK121318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023113P04, full insert sequence Length = 3396 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 6 ctttccctcctcctcatcctc 26
>dbj|AK103843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J12, full insert sequence Length = 3462 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 6 ctttccctcctcctcatcctc 26
>dbj|AK100362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083M12, full insert sequence Length = 4061 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 12 ctttccctcctcctcatcctc 32
>emb|BX510368.7| Zebrafish DNA sequence from clone DKEY-190P19 in linkage group 20, complete sequence Length = 84687 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 atggctctttccctcctcctc 106 ||||||||||||||||||||| Sbjct: 73055 atggctctttccctcctcctc 73075
>emb|AL731876.3|CNS08C8G Oryza sativa chromosome 12, . BAC OJ1194_E11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 119388 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 ctttccctcctcctcatcctc 112 ||||||||||||||||||||| Sbjct: 87914 ctttccctcctcctcatcctc 87934
>ref|XM_761971.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_41_10839_11444) partial mRNA Length = 606 Score = 42.1 bits (21), Expect = 4.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 397 gatagaggagaggattgctgc 417 ||||||||||||||||||||| Sbjct: 381 gatagaggagaggattgctgc 401 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 201,787,547 Number of extensions: 10661518 Number of successful extensions: 219035 Number of sequences better than 10.0: 65 Number of HSP's gapped: 219015 Number of HSP's successfully gapped: 132 Length of query: 1221 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1198 Effective length of database: 18,503,978,556 Effective search space: 22167766310088 Effective search space used: 22167766310088 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
