ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf56i20 |
|---|---|
| Clone Library Name | barley_pub |
>P84466:ERG7_BOVIN Lanosterol synthase - Bos taurus (Bovine)| Length = 732 Score = 33.5 bits (75), Expect = 0.24 Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%) Frame = +2 Query: 254 SCIRWKSNNRNSLRVMDTWSPHSW-VHVSFFSLCVFWKHY 370 SCI W ++ RNS+ D ++PHSW +HV + L ++ +H+ Sbjct: 269 SCIDWAAH-RNSVAPDDLYTPHSWLLHVVYAILNLYERHH 307
>Q5TCM9:LCE5A_HUMAN Late cornified envelope protein 5A - Homo sapiens (Human)| Length = 118 Score = 32.3 bits (72), Expect = 0.54 Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Frame = -3 Query: 220 SCRSS-----PLPFCDLPIRARAYLSRPPERSGEAPQS*SAPCPG--AQLCGSSRWSCFR 62 SC+ S P P C + PP+ + P SAPCP + CGSS C Sbjct: 2 SCQQSQQQCQPPPKCTPKCPPKCTPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGCCS 61 Query: 61 SQEP*RCSSH 32 S+ C SH Sbjct: 62 SEGGGCCLSH 71
>Q6AMQ5:GLMM_DESPS Phosphoglucosamine mutase - Desulfotalea psychrophila| Length = 450 Score = 30.8 bits (68), Expect = 1.6 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 105 GQGALQLCGA-SPDLSGGRLRYARARIGKSQNGNGELRQESTPLFILFPHSVVSDGNRII 281 GQ CGA P+L G+++ A IG + +G+G+ L + H VV DG+ ++ Sbjct: 212 GQNINAGCGALHPELMAGKVKELGADIGLAFDGDGD------RLIVCDEHGVVVDGDHVM 265 Query: 282 GI 287 I Sbjct: 266 AI 267
>Q99MV7:RNF17_MOUSE RING finger protein 17 - Mus musculus (Mouse)| Length = 626 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = -3 Query: 238 IKRGVDSCRSSPLPFCDLPIRARAYLSRPPERSGEAPQS*SAPCP 104 I+ ++SC F D PI Y +PP++ AP A CP Sbjct: 403 IEENLESC------FTDDPIETSGYPKKPPQKEQSAPVGSKAGCP 441
>Q8QZ73:POLN_MAYAB Non-structural polyprotein - Mayaro virus (strain Brazil) (MAYV)| Length = 2436 Score = 29.6 bits (65), Expect = 3.6 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Frame = +1 Query: 37 SSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAVG*GTREHESASHKTAMVNSG 216 S + +L S + G+ + LL + R V PL+ S VG A+ ++ Sbjct: 449 SFVIPSLWSAGLSIGIRHRIRLLLQSRR--VEPLVPSMDVGEARAAEREAAEAKEAEDTL 506 Query: 217 RSLPPFLSFSPI--QLYQMEIE*SEFSACDGYMES 315 +LPP + +P+ + ++++E EF A G +E+ Sbjct: 507 AALPPLIPTAPVLDDIPEVDVEELEFRAGAGVVET 541
>Q96HA4:CA159_HUMAN Uncharacterized protein C1orf159 precursor - Homo sapiens (Human)| Length = 380 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%) Frame = -3 Query: 118 SAPCPGAQLCGSS---RWSCFRSQEP*RCSSHA-PSIVGRGCR 2 +A CPGA LCG RW+ S RC + P+ G CR Sbjct: 74 NASCPGASLCGPGCYRRWNADGSASCVRCGNGTLPAYNGSECR 116
>Q2YHF0:POLG_DEN4T Genome polyprotein [Contains: Protein C - Dengue virus type 4 (strain| Thailand/0348/1991) (DENV-4) Length = 3387 Score = 29.3 bits (64), Expect = 4.7 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +1 Query: 7 SPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 +PYR W HGS + A +GS +S +N +LL + VVP++T A+ Sbjct: 2785 NPYRTWAYHGS--YEAPSTGSASSMVNGVVKLLTKP--WDVVPMVTQLAM 2830
>Q5UCB8:POLG_DEN4S Genome polyprotein [Contains: Protein C - Dengue virus type 4 (strain| Singapore/8976/1995) (DENV-4) Length = 3387 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 7 SPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 +PYR W HGS + A +GS +S +N +LL + V+P++T A+ Sbjct: 2785 NPYRTWAYHGS--YEAPSTGSASSMVNGVVKLLTKP--WDVIPMVTQLAM 2830
>Q58HT7:POLG_DEN4P Genome polyprotein [Contains: Protein C - Dengue virus type 4 (strain| Philippines/H241/1956) (DENV-4) Length = 3387 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 7 SPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 +PYR W HGS + A +GS +S +N +LL + V+P++T A+ Sbjct: 2785 NPYRTWAYHGS--YEAPSTGSASSMVNGVVKLLTKP--WDVIPMVTQLAM 2830
>Q2YHF2:POLG_DEN4H Genome polyprotein [Contains: Protein C - Dengue virus type 4 (strain| Thailand/0476/1997) (DENV-4) Length = 3387 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 7 SPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 +PYR W HGS + A +GS +S +N +LL + V+P++T A+ Sbjct: 2785 NPYRTWAYHGS--YEAPSTGSASSMVNGVVKLLTKP--WDVIPMVTQLAM 2830
>P09866:POLG_DEN4D Genome polyprotein [Contains: Capsid protein C - Dengue virus type 4| (strain Dominica/814669/1981) (DENV-4) Length = 3387 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +1 Query: 7 SPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 +PYR W HGS + A +GS +S +N +LL + V+P++T A+ Sbjct: 2785 NPYRTWAYHGS--YEAPSTGSASSMVNGVVKLLTKP--WDVIPMVTQLAM 2830
>Q6YMS4:POLG_DEN3S Genome polyprotein [Contains: Protein C - Dengue virus type 3 (strain| Sri Lanka/1266/2000) (DENV-3) Length = 3390 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 1 DGSPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 D +PY+ W HGS + +GS +S +N +LL + VVP++T A+ Sbjct: 2785 DENPYKTWAYHGS--YEVKATGSASSMINGVVKLLTKP--WDVVPMVTQMAM 2832
>P27915:POLG_DEN3P Genome polyprotein [Contains: Capsid protein C - Dengue virus type 3| (strain Philippines/H87/1956) (DENV-3) Length = 3390 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 1 DGSPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 D +PY+ W HGS + +GS +S +N +LL + VVP++T A+ Sbjct: 2785 DENPYKTWAYHGS--YEVKATGSASSMINGVVKLLTKP--WDVVPMVTQMAM 2832
>Q6YMS3:POLG_DEN3M Genome polyprotein [Contains: Protein C - Dengue virus type 3 (strain| Martinique/1243/1999) (DENV-3) Length = 3390 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 1 DGSPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 D +PY+ W HGS + +GS +S +N +LL + VVP++T A+ Sbjct: 2785 DENPYKTWAYHGS--YEVKATGSASSMINGVVKLLTKP--WDVVPMVTQMAM 2832
>Q5UB51:POLG_DEN3I Genome polyprotein [Contains: Protein C - Dengue virus type 3 (strain| Singapore/8120/1995) (DENV-3) Length = 3390 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 1 DGSPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 D +PY+ W HGS + +GS +S +N +LL + VVP++T A+ Sbjct: 2785 DENPYKTWAYHGS--YEVKATGSASSMINGVVKLLTKP--WDVVPMVTQMAM 2832
>Q99D35:POLG_DEN3C Genome polyprotein [Contains: Protein C - Dengue virus type 3 (strain| China/80-2/1980) (DENV-3) Length = 3390 Score = 28.9 bits (63), Expect = 6.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 1 DGSPYRLWKAHGSSIFMALESGSRTSGMNRKAELLGRERFSFVVPLLTSQAV 156 D +PY+ W HGS + +GS +S +N +LL + VVP++T A+ Sbjct: 2785 DENPYKTWAYHGS--YEVKATGSASSMINGVVKLLTKP--WDVVPMVTQMAM 2832
>Q07954:LRP1_HUMAN Low-density lipoprotein receptor-related protein 1 precursor - Homo| sapiens (Human) Length = 4544 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = -3 Query: 118 SAPCPGAQLCGSSRWSCFRSQEP*RCSSHAPSIVGRGC 5 S CPG +C RW C ++ C+ A + GC Sbjct: 2778 SFSCPGTHVCVPERWLCDGDKD---CADGADESIAAGC 2812
>Q10289:FAS2_SCHPO Fatty acid synthase subunit alpha - Schizosaccharomyces pombe| (Fission yeast) Length = 1842 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = -3 Query: 304 IHHTQRIPIIRFPSDTTEWGKRIKRGVDSCRSSPLPFCDLPIRARAYLSRPPERSG 137 + H ++ I P D+TEW R KRG L F D + + L P+R G Sbjct: 1103 LRHGDQVEIFEIP-DSTEWSVRFKRGTSMLIPKALRF-DRFVAGQIPLGWDPKRYG 1156 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 78,623,527 Number of extensions: 1788861 Number of successful extensions: 4216 Number of sequences better than 10.0: 18 Number of HSP's gapped: 4215 Number of HSP's successfully gapped: 18 Length of query: 138 Length of database: 100,686,439 Length adjustment: 101 Effective length of query: 37 Effective length of database: 72,982,644 Effective search space: 2700357828 Effective search space used: 2700357828 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
