ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf56h23 |
|---|---|
| Clone Library Name | barley_pub |
>P40054:SERA_YEAST D-3-phosphoglycerate dehydrogenase 1 - Saccharomyces cerevisiae| (Baker's yeast) Length = 469 Score = 33.9 bits (76), Expect = 0.63 Identities = 26/96 (27%), Positives = 38/96 (39%) Frame = -1 Query: 530 CKGMSTVDIQGAA*LVVIRFMPARTVVIFVEPRHGRPSVRTSNHLVVVSILHNNGGMSRL 351 C G + VD+ A +R + +F P SV ++S+ G S Sbjct: 130 CIGTNQVDLDYAT---------SRGIAVFNSPFSNSRSVAELVIAEIISLARQLGDRSIE 180 Query: 350 LHCCTWAIPIGRAGLAAGRISGAIGFGWLPGQLFLL 243 LH TW R G+ G IG+G + QL +L Sbjct: 181 LHTGTWNKVAARCWEVRGKTLGIIGYGHIGSQLSVL 216
>P40510:SER33_YEAST D-3-phosphoglycerate dehydrogenase 2 - Saccharomyces cerevisiae| (Baker's yeast) Length = 469 Score = 33.5 bits (75), Expect = 0.83 Identities = 26/96 (27%), Positives = 40/96 (41%) Frame = -1 Query: 530 CKGMSTVDIQGAA*LVVIRFMPARTVVIFVEPRHGRPSVRTSNHLVVVSILHNNGGMSRL 351 C G + VD++ AA ++ + +F P SV ++S+ G S Sbjct: 130 CIGTNQVDLKYAA---------SKGIAVFNSPFSNSRSVAELVIGEIISLARQLGDRSIE 180 Query: 350 LHCCTWAIPIGRAGLAAGRISGAIGFGWLPGQLFLL 243 LH TW R G+ G IG+G + QL +L Sbjct: 181 LHTGTWNKVAARCWEVRGKTLGIIGYGHIGSQLSVL 216
>Q98BI8:IF2_RHILO Translation initiation factor IF-2 - Rhizobium loti (Mesorhizobium| loti) Length = 860 Score = 32.3 bits (72), Expect = 1.8 Identities = 17/61 (27%), Positives = 29/61 (47%) Frame = +1 Query: 187 LQQHMGFGWTGTFMKHSKTSRNNWPGSHPNPMAPLIRPAASPARPMGIAQVQQWSRRLIP 366 ++Q+ G T + + +K + + PG P P A P +P P+ A V Q + + P Sbjct: 32 VRQNFSHGRTKSVVVETKKRKFSLPGDKPEPAAAAPVPVFTPKPPVAAAPVVQEAPKAAP 91 Query: 367 P 369 P Sbjct: 92 P 92
>Q8C092:TAF5_MOUSE Transcription initiation factor TFIID subunit 5 - Mus musculus| (Mouse) Length = 801 Score = 32.0 bits (71), Expect = 2.4 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 6/101 (5%) Frame = +3 Query: 270 PKPNGAADSTGSKPCTADGNCPGTAMEQTTHTTIVVKDRDHHQVVASAYARSAVPRFHED 449 P+P G S S G+ G A ++ V+D+ V SAY + P +E+ Sbjct: 162 PEPPGTGASVTS---VFSGSASGPAAPGKV-ASVAVEDQPDVSAVLSAYNQQGDPTMYEE 217 Query: 450 YYGPGGHEPNHH*LSRSLNIHRT------HPFAGHNYLRMV 554 YY H + SL+ HR +P H YL +V Sbjct: 218 YY-----SGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 253
>Q06587:RING1_HUMAN E3 ubiquitin-protein ligase RING1 - Homo sapiens (Human)| Length = 406 Score = 32.0 bits (71), Expect = 2.4 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 222 LHEALENKQEQLAGQPPKPNGAADSTGSKP-CTADGNCPG 338 L ALE +Q+Q AG+P P G A TG C +G G Sbjct: 301 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAG 340
>Q9UQ05:KCNH4_HUMAN Potassium voltage-gated channel subfamily H member 4 - Homo sapiens| (Human) Length = 1017 Score = 31.6 bits (70), Expect = 3.1 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 259 PGSHPNPMAPLIRPAASPARPMG 327 PG P P PL+ P SPARP G Sbjct: 734 PGGGPRPRRPLLLPNLSPARPRG 756
>Q15542:TAF5_HUMAN Transcription initiation factor TFIID subunit 5 - Homo sapiens| (Human) Length = 800 Score = 31.2 bits (69), Expect = 4.1 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Frame = +3 Query: 258 AGQPPKPNGAADSTGSKPCTADGNCPGTAMEQTTHTTIVVKDRDHHQVVASAYARSAVPR 437 A P GA+ +T + PG ++ V+D+ V SAY + P Sbjct: 159 AAPDPPGTGASGATVVSGSASGPAAPGKV------GSVAVEDQPDVSAVLSAYNQQGDPT 212 Query: 438 FHEDYYGPGGHEPNHH*LSRSLNIHRT------HPFAGHNYLRMV 554 +E+YY H + SL+ HR +P H YL +V Sbjct: 213 MYEEYY-----SGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 252
>Q10124:PQE1_CAEEL Putative RNA exonuclease pqe-1 - Caenorhabditis elegans| Length = 1647 Score = 31.2 bits (69), Expect = 4.1 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 15/84 (17%) Frame = +3 Query: 264 QPPKPNGAAD--STGSKPCTADGNCPGTAMEQTTHTTI---VVKDRD------HHQVVAS 410 Q P P+GAA S+G+ + PG TH VV D H+++ Sbjct: 368 QQPGPHGAAQHPSSGTVAPMHITSLPGNHPLNRTHLLFNRQVVPALDIRNLIAQHRLMVD 427 Query: 411 AYARSAV----PRFHEDYYGPGGH 470 + R+ + P H+DY+ PGGH Sbjct: 428 DFVRAQICYRLPENHQDYWPPGGH 451
>P97609:HAIR_RAT Protein hairless - Rattus norvegicus (Rat)| Length = 1181 Score = 31.2 bits (69), Expect = 4.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -3 Query: 117 KRAGSPEVLATDGPVGDARAGAKYMGIGRAGEGEWKQS 4 KRAGSPEV GP R + G GR G W+++ Sbjct: 411 KRAGSPEVQGARGP-APKRPSHTFPGTGRQGARAWQET 447
>Q87VS6:AROQ_PSESM 3-dehydroquinate dehydratase - Pseudomonas syringae pv. tomato| Length = 150 Score = 31.2 bits (69), Expect = 4.1 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 504 NIHRTHPFAGHNYLRMVAVFITCPNAAASCVRLGLE 611 N+H+ PF H+Y VAV + C AS RL LE Sbjct: 104 NVHKREPFRHHSYFSDVAVGVIC-GLGASGYRLALE 138
>Q88QD4:AROQ1_PSEPK 3-dehydroquinate dehydratase 1 - Pseudomonas putida (strain KT2440)| Length = 151 Score = 31.2 bits (69), Expect = 4.1 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = +3 Query: 504 NIHRTHPFAGHNYLRMVAVFITCPNAAASCVRLGLE 611 N+H+ PF H+Y VAV + C AS RL LE Sbjct: 104 NVHKREPFRHHSYFSDVAVGVIC-GLGASGYRLALE 138
>A2T6X5:RING1_PANTR E3 ubiquitin-protein ligase RING1 - Pan troglodytes (Chimpanzee)| Length = 377 Score = 30.8 bits (68), Expect = 5.4 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 222 LHEALENKQEQLAGQPPKPNGAADSTG 302 L ALE +Q+Q AG+P P G A TG Sbjct: 272 LRIALERRQQQEAGEPGGPGGGASDTG 298
>A1YFY1:RING1_PANPA E3 ubiquitin-protein ligase RING1 - Pan paniscus (Pygmy chimpanzee)| (Bonobo) Length = 377 Score = 30.8 bits (68), Expect = 5.4 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 222 LHEALENKQEQLAGQPPKPNGAADSTG 302 L ALE +Q+Q AG+P P G A TG Sbjct: 272 LRIALERRQQQEAGEPGGPGGGASDTG 298
>Q8WMN5:RING1_MACMU E3 ubiquitin-protein ligase RING1 - Macaca mulatta (Rhesus macaque)| Length = 377 Score = 30.8 bits (68), Expect = 5.4 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 222 LHEALENKQEQLAGQPPKPNGAADSTG 302 L ALE +Q+Q AG+P P G A TG Sbjct: 272 LRIALERRQQQEAGEPGGPGGGASDTG 298
>A1YER5:RING1_GORGO E3 ubiquitin-protein ligase RING1 - Gorilla gorilla gorilla| (Lowland gorilla) Length = 377 Score = 30.8 bits (68), Expect = 5.4 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +3 Query: 222 LHEALENKQEQLAGQPPKPNGAADSTG 302 L ALE +Q+Q AG+P P G A TG Sbjct: 272 LRIALERRQQQEAGEPGGPGGGASDTG 298
>Q5AEM5:OXR1_CANAL Oxidation resistance protein 1 - Candida albicans (Yeast)| Length = 345 Score = 30.8 bits (68), Expect = 5.4 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Frame = +3 Query: 198 HGIRLDR-HLHEALENKQEQLAGQPPKPNGAADSTGSKPCTADGNCPGTAMEQTTHTTIV 374 HGI L+ + + E++ L Q G ADS D + P + E + V Sbjct: 147 HGISLNTLYRNSNPEHQLRLLKKQKAAEKGFADSIVKNMVVGDTSRPRYSFEPKRSQSYV 206 Query: 375 VKDRDHHQVVASAY-ARSAVPRFHEDYYGPG 464 + +D+H AY + + P H YYG G Sbjct: 207 LVIKDNHNNKFGAYLSENLKPMEHRRYYGNG 237
>P37126:CGLH_XANMA Chorionicgonadotropic hormone-like protein - Xanthomonas| maltophilia (Pseudomonas maltophilia) (Stenotrophomonas maltophilia) Length = 443 Score = 30.8 bits (68), Expect = 5.4 Identities = 11/29 (37%), Positives = 17/29 (58%) Frame = -2 Query: 430 TADRAYALATTWWWSLSFTTMVV*VVCSI 344 T R + TTWWWS+S+ V ++ S+ Sbjct: 22 TGRRCVGVVTTWWWSVSYVERQVQIIDSL 50
>Q9GLL9:PROP1_PIG Homeobox protein prophet of Pit-1 - Sus scrofa (Pig)| Length = 226 Score = 30.4 bits (67), Expect = 7.0 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +1 Query: 217 GTFMKHSKTSRNNWPGSHPNPMAPLIRPAASPARPMGIAQVQQWS 351 G+F +H + S + +P HP P L P A P P+ + + W+ Sbjct: 183 GSFARHPQ-SEDWYPTLHPTPTGHLPCPPAPPVLPLSLEPPKSWN 226
>Q5BFH3:XRN2_EMENI 5'-3' exoribonuclease 2 - Emericella nidulans (Aspergillus nidulans)| Length = 1032 Score = 30.0 bits (66), Expect = 9.1 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Frame = +1 Query: 193 QHMGFGWTGTFMKHSKTSRNNWPG---SH----PNPMA----PLIRPAASPARPMGI 330 QH G + G + + R N+ G SH PNP A P P A+P PMG+ Sbjct: 865 QHSGRSYGGAPFRGGRGGRMNYAGDRQSHGNDRPNPFAAHLDPKFMPGANPGAPMGM 921
>O30557:AROQ1_PSEAE 3-dehydroquinate dehydratase 1 - Pseudomonas aeruginosa| Length = 147 Score = 30.0 bits (66), Expect = 9.1 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +3 Query: 504 NIHRTHPFAGHNYLRMVAVFITCPNAAASCVRLGLE 611 N+H+ PF H+Y VAV + C A+ RL LE Sbjct: 104 NVHKREPFRHHSYFSDVAVGVIC-GLGATGYRLALE 138 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 125,897,494 Number of extensions: 2813207 Number of successful extensions: 7519 Number of sequences better than 10.0: 20 Number of HSP's gapped: 7509 Number of HSP's successfully gapped: 20 Length of query: 238 Length of database: 100,686,439 Length adjustment: 110 Effective length of query: 128 Effective length of database: 70,513,989 Effective search space: 9025790592 Effective search space used: 9025790592 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
