ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf60c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC114741.3| Homo sapiens BAC clone RP11-62N21 from 4, complet... 46 0.47
2gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Can... 46 0.47
3gb|AC121884.3| Mus musculus BAC clone RP24-138L20 from chromosom... 44 1.8
4gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, com... 44 1.8
5gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, co... 44 1.8
6gb|AC087399.7| Homo sapiens chromosome 18, clone RP11-451L19, co... 44 1.8
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 1.8
8gb|AC142245.14| Mus musculus chromosome 15, clone RP23-82J20, co... 44 1.8
9emb|AL662802.14| Mouse DNA sequence from clone RP23-34N10 on chr... 44 1.8
10gb|AC117947.3| Homo sapiens BAC clone RP11-20E15 from 2, complet... 44 1.8
11gb|AY810184.1| Schistosoma japonicum clone SJCHGC01401 unknown mRNA 44 1.8
12emb|AJ009614.5|HSAJ9614 Homo sapiens chromosome 18 sequence from... 44 1.8
13emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4,... 44 1.8
14gb|AC130544.3| Mus musculus BAC clone RP24-209I17 from chromosom... 42 7.3
15gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosom... 42 7.3
16gb|AC117197.3| Mus musculus BAC clone RP23-127A21 from 16, compl... 42 7.3
17gb|AC108773.9| Mus musculus chromosome 5, clone RP23-118L1, comp... 42 7.3
18gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, comple... 42 7.3
19emb|BX936436.13| Zebrafish DNA sequence from clone DKEY-16H19 in... 42 7.3
20gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, compl... 42 7.3
21emb|CR847938.10| Zebrafish DNA sequence from clone DKEYP-30B3 in... 42 7.3
22emb|AL138965.10| Human DNA sequence from clone RP11-367C11 on ch... 42 7.3
23emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chr... 42 7.3
24gb|AC079353.5| Homo sapiens BAC clone RP11-1136K13 from 2, compl... 42 7.3
25emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, co... 42 7.3
26dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 7.3
27gb|AC159261.4| Mus musculus BAC clone RP24-80C13 from chromosome... 42 7.3
28emb|CT485700.1| Xenopus tropicalis finished cDNA, clone TEgg014a15 42 7.3
29gb|DQ265374.1| Plasmodium falciparum isolate Pf1544_43 RIFIN (ri... 42 7.3 
>gb|AC114741.3| Homo sapiens BAC clone RP11-62N21 from 4, complete sequence
          Length = 119575
 Score = 46.1 bits (23), Expect = 0.47
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 1869   ttttctgtgaaagttttatattcagag 1895
              |||| ||||||||||||||||||||||
Sbjct: 110211 ttttgtgtgaaagttttatattcagag 110185
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>gb|AC025097.41| Homo sapiens 12 BAC RP11-285E4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 203530

 Score = 46.1 bits (23), Expect = 0.47
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 603   ttttgttagttacatacacattt 625
             |||||||||||||||||||||||
Sbjct: 81197 ttttgttagttacatacacattt 81175
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>gb|AC121884.3| Mus musculus BAC clone RP24-138L20 from chromosome 15, complete sequence
          Length = 204711

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 1851   tgaaataattctgggatgttttctgt 1876
              |||||||||||| |||||||||||||
Sbjct: 165819 tgaaataattcttggatgttttctgt 165794
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>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence
          Length = 243323

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 287    actttggtaagttttgtgagcc 308
              ||||||||||||||||||||||
Sbjct: 112912 actttggtaagttttgtgagcc 112891
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>gb|AC087675.9| Homo sapiens chromosome 18, clone RP11-871M19, complete sequence
          Length = 168201

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 1243   aaggtggaggacacgctgcatt 1264
              ||||||||||||||||||||||
Sbjct: 120011 aaggtggaggacacgctgcatt 119990
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>gb|AC087399.7| Homo sapiens chromosome 18, clone RP11-451L19, complete sequence
          Length = 171320

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1243  aaggtggaggacacgctgcatt 1264
             ||||||||||||||||||||||
Sbjct: 49184 aaggtggaggacacgctgcatt 49163
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 1845    aatttctgaaataattctggga 1866
               ||||||||||||||||||||||
Sbjct: 6426787 aatttctgaaataattctggga 6426766
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>gb|AC142245.14| Mus musculus chromosome 15, clone RP23-82J20, complete sequence
          Length = 242954

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 1851  tgaaataattctgggatgttttctgt 1876
             |||||||||||| |||||||||||||
Sbjct: 22945 tgaaataattcttggatgttttctgt 22920
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>emb|AL662802.14| Mouse DNA sequence from clone RP23-34N10 on chromosome 11, complete
              sequence
          Length = 224024

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 927    ctccagctcctccttctgcagtttct 952
              |||||||||||||||||| |||||||
Sbjct: 177812 ctccagctcctccttctgtagtttct 177787
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>gb|AC117947.3| Homo sapiens BAC clone RP11-20E15 from 2, complete sequence
          Length = 57942

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 535   ttaagaaagaacatgtttttaa 556
             ||||||||||||||||||||||
Sbjct: 21894 ttaagaaagaacatgtttttaa 21915
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>gb|AY810184.1| Schistosoma japonicum clone SJCHGC01401 unknown mRNA
          Length = 532

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 585 aacaatactgtgtaaatatttt 606
           ||||||||||||||||||||||
Sbjct: 76  aacaatactgtgtaaatatttt 55
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>emb|AJ009614.5|HSAJ9614 Homo sapiens chromosome 18 sequence from PAC RP1-34E8, complete
             sequence
          Length = 79043

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1243  aaggtggaggacacgctgcatt 1264
             ||||||||||||||||||||||
Sbjct: 73345 aaggtggaggacacgctgcatt 73324
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>emb|AL662965.3|OSJN00167 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0040D17,
             complete sequence
          Length = 147548

 Score = 44.1 bits (22), Expect = 1.8
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 1845  aatttctgaaataattctggga 1866
             ||||||||||||||||||||||
Sbjct: 88936 aatttctgaaataattctggga 88915
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>gb|AC130544.3| Mus musculus BAC clone RP24-209I17 from chromosome 19, complete
             sequence
          Length = 166863

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   aaagaacatgtttttaataca 560
             |||||||||||||||||||||
Sbjct: 21868 aaagaacatgtttttaataca 21888
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>gb|AC125340.3| Mus musculus BAC clone RP24-364H15 from chromosome 1, complete sequence
          Length = 177161

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 537    aagaaagaacatgtttttaat 557
              |||||||||||||||||||||
Sbjct: 134194 aagaaagaacatgtttttaat 134174
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>gb|AC117197.3| Mus musculus BAC clone RP23-127A21 from 16, complete sequence
          Length = 211410

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 1846   atttctgaaataattctggga 1866
              |||||||||||||||||||||
Sbjct: 163536 atttctgaaataattctggga 163556
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>gb|AC108773.9| Mus musculus chromosome 5, clone RP23-118L1, complete sequence
          Length = 222706

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 927   ctccagctcctccttctgcag 947
             |||||||||||||||||||||
Sbjct: 56698 ctccagctcctccttctgcag 56678
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>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence
          Length = 172291

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 830   tcttctctcttcttccctctg 850
             |||||||||||||||||||||
Sbjct: 79981 tcttctctcttcttccctctg 79961
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>emb|BX936436.13| Zebrafish DNA sequence from clone DKEY-16H19 in linkage group 6,
             complete sequence
          Length = 200434

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 954   tcggtgttctgtctgcagcagttgc 978
             |||||||||||||| ||||||||||
Sbjct: 15764 tcggtgttctgtcttcagcagttgc 15788
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>gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, complete sequence
          Length = 151884

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 530   caattttaagaaagaacatgt 550
             |||||||||||||||||||||
Sbjct: 63795 caattttaagaaagaacatgt 63775
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>emb|CR847938.10| Zebrafish DNA sequence from clone DKEYP-30B3 in linkage group 6,
             complete sequence
          Length = 169257

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 954   tcggtgttctgtctgcagcagttgc 978
             |||||||||||||| ||||||||||
Sbjct: 39268 tcggtgttctgtcttcagcagttgc 39244
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>emb|AL138965.10| Human DNA sequence from clone RP11-367C11 on chromosome 13 Contains the
             3' end of a novel gene, a pseudogene similar to part of a
             novel protein (KIAA1074, KIAA0565) and two CpG islands,
             complete sequence
          Length = 138159

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 597   taaatattttgttagttacat 617
             |||||||||||||||||||||
Sbjct: 26872 taaatattttgttagttacat 26892
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>emb|AL136991.26| Human DNA sequence from clone RP11-189J1 on chromosome 20 Contains the
             3' end of the gene for a novel protein (LOC284776),
             complete sequence
          Length = 169342

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 533   ttttaagaaagaacatgtttttaat 557
             |||||| ||||||||||||||||||
Sbjct: 91099 ttttaataaagaacatgtttttaat 91123
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>gb|AC079353.5| Homo sapiens BAC clone RP11-1136K13 from 2, complete sequence
          Length = 113333

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 833   tctctcttcttccctctgaga 853
             |||||||||||||||||||||
Sbjct: 75836 tctctcttcttccctctgaga 75816
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>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence
          Length = 211094

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 954  tcggtgttctgtctgcagcagttgc 978
            |||||||||||||| ||||||||||
Sbjct: 7500 tcggtgttctgtcttcagcagttgc 7476
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
             sequences
          Length = 195800

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 830   tcttctctcttcttccctctg 850
             |||||||||||||||||||||
Sbjct: 67705 tcttctctcttcttccctctg 67725
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>gb|AC159261.4| Mus musculus BAC clone RP24-80C13 from chromosome 13, complete sequence
          Length = 230437

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167735 gctgtggagggggagctgtgg 167715



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167766 gctgtggagggggagctgtgg 167746



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167797 gctgtggagggggagctgtgg 167777



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167828 gctgtggagggggagctgtgg 167808



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167859 gctgtggagggggagctgtgg 167839



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167890 gctgtggagggggagctgtgg 167870



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167952 gctgtggagggggagctgtgg 167932



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 167983 gctgtggagggggagctgtgg 167963



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168014 gctgtggagggggagctgtgg 167994



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168045 gctgtggagggggagctgtgg 168025



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168076 gctgtggagggggagctgtgg 168056



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168090 gctgtggagggggagctgtgg 168070



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168121 gctgtggagggggagctgtgg 168101



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168152 gctgtggagggggagctgtgg 168132



 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1546   gctgtggagggggagctgtgg 1566
              |||||||||||||||||||||
Sbjct: 168214 gctgtggagggggagctgtgg 168194
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>emb|CT485700.1| Xenopus tropicalis finished cDNA, clone TEgg014a15
          Length = 3491

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 825  ggtcgtcttctctcttcttcc 845
            |||||||||||||||||||||
Sbjct: 1245 ggtcgtcttctctcttcttcc 1225
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>gb|DQ265374.1| Plasmodium falciparum isolate Pf1544_43 RIFIN (rif) gene, exon 2
           and partial cds
          Length = 862

 Score = 42.1 bits (21), Expect = 7.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 547 atgtttttaatacatgaataa 567
           |||||||||||||||||||||
Sbjct: 461 atgtttttaatacatgaataa 441


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 294,574,843
Number of extensions: 15865355
Number of successful extensions: 396279
Number of sequences better than 10.0: 29
Number of HSP's gapped: 396279
Number of HSP's successfully gapped: 43
Length of query: 1911
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1888
Effective length of database: 18,503,978,556
Effective search space: 34935511513728
Effective search space used: 34935511513728
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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