| Clone Name | FLbaf51f23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT835853.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI015B08, full insert sequence Length = 681 Score = 147 bits (74), Expect = 1e-31 Identities = 208/252 (82%), Gaps = 3/252 (1%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||| ||||||||| |||||| ||| |||||| ||||||||| || | ||||||||| Sbjct: 105 gagcacgaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaa 164 Query: 464 tacttctctaataaggcttccgacggaggaaaaatctttgaagaagtaactattgttgaa 523 |||||||||||||||| || || |||||||| ||||||||||| | ||| |||||| Sbjct: 165 tacttctctaataaggattttgatggaggaaatgtctttgaagaaatcact---gttgaa 221 Query: 524 ggagaaaccatccattcaagcaggtggccatgcacaagttcgtatgcgaaccctgtgaat 583 || ||||| || || ||||||||||||||||| ||||| || | ||| |||| || ||| Sbjct: 222 ggtgaaactattcagtcaagcaggtggccatgtacaagatcatttgcagacccagtaaat 281 Query: 584 tttctccgagagaagaacaaccatgagaggagggattctccatcttcagcagcagattcc 643 ||| | ||||| ||||||| |||||||||||| ||||||||||| | ||||||| ||| Sbjct: 282 ttttttcgagataagaacagccatgagaggagtgattctccatccttgacagcagactcc 341 Query: 644 tctgccaagaac 655 ||||||||||| Sbjct: 342 gctgccaagaac 353
>emb|CT835848.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011D11, full insert sequence Length = 753 Score = 147 bits (74), Expect = 1e-31 Identities = 208/252 (82%), Gaps = 3/252 (1%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||| ||||||||| |||||| ||| |||||| ||||||||| || | ||||||||| Sbjct: 105 gagcacgaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaa 164 Query: 464 tacttctctaataaggcttccgacggaggaaaaatctttgaagaagtaactattgttgaa 523 |||||||||||||||| || || |||||||| ||||||||||| | ||| |||||| Sbjct: 165 tacttctctaataaggattttgatggaggaaatgtctttgaagaaatcact---gttgaa 221 Query: 524 ggagaaaccatccattcaagcaggtggccatgcacaagttcgtatgcgaaccctgtgaat 583 || ||||| || || ||||||||||||||||| ||||| || | ||| |||| || ||| Sbjct: 222 ggtgaaactattcagtcaagcaggtggccatgtacaagatcatttgcagacccagtaaat 281 Query: 584 tttctccgagagaagaacaaccatgagaggagggattctccatcttcagcagcagattcc 643 ||| | ||||| ||||||| |||||||||||| ||||||||||| | ||||||| ||| Sbjct: 282 ttttttcgagataagaacagccatgagaggagtgattctccatccttgacagcagactcc 341 Query: 644 tctgccaagaac 655 ||||||||||| Sbjct: 342 gctgccaagaac 353
>ref|NM_001069988.1| Oryza sativa (japonica cultivar-group) Os09g0473900 (Os09g0473900) mRNA, complete cds Length = 5058 Score = 93.7 bits (47), Expect = 1e-15 Identities = 116/139 (83%) Strand = Plus / Plus Query: 517 tgttgaaggagaaaccatccattcaagcaggtggccatgcacaagttcgtatgcgaaccc 576 ||||||||| ||||| || || ||||||||||||||||| ||||| || | ||| |||| Sbjct: 4818 tgttgaaggtgaaactattcagtcaagcaggtggccatgtacaagatcatttgcagaccc 4877 Query: 577 tgtgaattttctccgagagaagaacaaccatgagaggagggattctccatcttcagcagc 636 || |||||| | ||||| ||||||| |||||||||||| ||||||||||| | |||| Sbjct: 4878 agtaaatttttttcgagataagaacagccatgagaggagtgattctccatccttgacagc 4937 Query: 637 agattcctctgccaagaac 655 ||| ||| ||||||||||| Sbjct: 4938 agactccgctgccaagaac 4956
>gb|AY111313.1| Zea mays CL35554_1 mRNA sequence Length = 608 Score = 71.9 bits (36), Expect = 5e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 596 aagaacaaccatgagaggagggattctccatcttcagcagcagattcctctgccaagaac 655 ||||||| |||||||| | | |||||||||||||||||||||||| ||||||||||||| Sbjct: 366 aagaacagccatgagaagggaaattctccatcttcagcagcagatttctctgccaagaac 307
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 69.9 bits (35), Expect = 2e-08 Identities = 92/111 (82%) Strand = Plus / Plus Query: 545 aggtggccatgcacaagttcgtatgcgaaccctgtgaattttctccgagagaagaacaac 604 ||||||||||| ||||| || | ||| |||| || |||||| | ||||| ||||||| | Sbjct: 18066019 aggtggccatgtacaagatcatttgcagacccagtaaatttttttcgagataagaacagc 18066078 Query: 605 catgagaggagggattctccatcttcagcagcagattcctctgccaagaac 655 ||||||||||| ||||||||||| | ||||||| ||| ||||||||||| Sbjct: 18066079 catgagaggagtgattctccatccttgacagcagactccgctgccaagaac 18066129 Score = 67.9 bits (34), Expect = 7e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 410 gaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaatacttc 469 ||||||||| |||||| ||| |||||| ||||||||| || | ||||||||||||||| Sbjct: 18058730 gaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttc 18058789 Query: 470 tctaataagg 479 |||||||||| Sbjct: 18058790 tctaataagg 18058799
>dbj|AP006169.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08 Length = 155316 Score = 69.9 bits (35), Expect = 2e-08 Identities = 92/111 (82%) Strand = Plus / Plus Query: 545 aggtggccatgcacaagttcgtatgcgaaccctgtgaattttctccgagagaagaacaac 604 ||||||||||| ||||| || | ||| |||| || |||||| | ||||| ||||||| | Sbjct: 59141 aggtggccatgtacaagatcatttgcagacccagtaaatttttttcgagataagaacagc 59200 Query: 605 catgagaggagggattctccatcttcagcagcagattcctctgccaagaac 655 ||||||||||| ||||||||||| | ||||||| ||| ||||||||||| Sbjct: 59201 catgagaggagtgattctccatccttgacagcagactccgctgccaagaac 59251 Score = 67.9 bits (34), Expect = 7e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 410 gaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaatacttc 469 ||||||||| |||||| ||| |||||| ||||||||| || | ||||||||||||||| Sbjct: 51852 gaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttc 51911 Query: 470 tctaataagg 479 |||||||||| Sbjct: 51912 tctaataagg 51921
>dbj|AP005573.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1509_C06 Length = 113436 Score = 67.9 bits (34), Expect = 7e-08 Identities = 61/70 (87%) Strand = Plus / Plus Query: 410 gaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaatacttc 469 ||||||||| |||||| ||| |||||| ||||||||| || | ||||||||||||||| Sbjct: 110384 gaacagaagataaacaaatatcaagctatacttgcagcccgtttgaaggccaaatacttc 110443 Query: 470 tctaataagg 479 |||||||||| Sbjct: 110444 tctaataagg 110453
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence Length = 175313 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 711 caacagaaaacaatctaacacc 732 |||||||||||||||||||||| Sbjct: 3450 caacagaaaacaatctaacacc 3471
>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence Length = 205237 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 711 caacagaaaacaatctaacacc 732 |||||||||||||||||||||| Sbjct: 85241 caacagaaaacaatctaacacc 85262
>ref|NM_001068633.1| Oryza sativa (japonica cultivar-group) Os08g0487000 (Os08g0487000) mRNA, complete cds Length = 777 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 200 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 259 Query: 464 tactt 468 ||||| Sbjct: 260 tactt 264
>emb|CR925711.7| Zebrafish DNA sequence from clone CH211-215G15, complete sequence Length = 200688 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 817 aacctgaagtatgcaagttat 837 ||||||||||||||||||||| Sbjct: 15493 aacctgaagtatgcaagttat 15513
>ref|XM_001116760.1| PREDICTED: Macaca mulatta hypothetical protein LOC716906 (LOC716906), mRNA Length = 1752 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 970 ctttttctttaaaataatttg 990 ||||||||||||||||||||| Sbjct: 1478 ctttttctttaaaataatttg 1458
>gb|AC121510.10| Mus musculus chromosome 19, clone RP24-371N19, complete sequence Length = 168677 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 969 tctttttctttaaaataattt 989 ||||||||||||||||||||| Sbjct: 127451 tctttttctttaaaataattt 127471
>gb|AC137853.21| Mus musculus chromosome 19, clone RP24-276L14, complete sequence Length = 173430 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 969 tctttttctttaaaataattt 989 ||||||||||||||||||||| Sbjct: 149040 tctttttctttaaaataattt 149020
>gb|AC117677.9| Mus musculus chromosome 7, clone RP23-421G2, complete sequence Length = 249789 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 837 tcatgaaataaaaatccgtcc 857 ||||||||||||||||||||| Sbjct: 120851 tcatgaaataaaaatccgtcc 120871
>gb|AC127365.4| Mus musculus BAC clone RP23-8K10 from 3, complete sequence Length = 191217 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 966 ttatctttttctttaaaataa 986 ||||||||||||||||||||| Sbjct: 139083 ttatctttttctttaaaataa 139063
>gb|AC107806.10| Mus musculus chromosome 3, clone RP23-55C1, complete sequence Length = 214411 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 966 ttatctttttctttaaaataa 986 ||||||||||||||||||||| Sbjct: 138937 ttatctttttctttaaaataa 138957
>ref|XM_817439.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.4860) partial mRNA Length = 3207 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 579 tgaattttctccgagagaagaacaa 603 ||||||||||||||||| ||||||| Sbjct: 998 tgaattttctccgagaggagaacaa 1022
>gb|AC164000.2| Mus musculus chromosome 7, clone RP23-157G7, complete sequence Length = 206022 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 837 tcatgaaataaaaatccgtcc 857 ||||||||||||||||||||| Sbjct: 49243 tcatgaaataaaaatccgtcc 49223
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 24073777 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 24073836 Query: 464 tactt 468 ||||| Sbjct: 24073837 tactt 24073841
>emb|AL713866.4| Human DNA sequence from clone RP11-309H21 on chromosome 1 Contains a processed pseudogene similar to heterogeneous nuclear ribonucleoprotein A1 (HNRPA1), complete sequence Length = 142390 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 971 tttttctttaaaataatttgc 991 ||||||||||||||||||||| Sbjct: 104637 tttttctttaaaataatttgc 104617
>emb|AL358612.9| Human DNA sequence from clone RP11-435M3 on chromosome 10 Contains the 5' end of the MYO3A gene for myosin IIIA, a novel gene and a CpG island, complete sequence Length = 174021 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 492 gaaaaatctttgaagaagtaa 512 ||||||||||||||||||||| Sbjct: 79445 gaaaaatctttgaagaagtaa 79425
>gb|AC055120.5| Homo sapiens BAC clone RP11-336N6 from 4, complete sequence Length = 178524 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 969 tctttttctttaaaataattt 989 ||||||||||||||||||||| Sbjct: 54001 tctttttctttaaaataattt 54021
>emb|AL954384.11| Zebrafish DNA sequence from clone CH211-146L13 in linkage group 6, complete sequence Length = 162560 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 817 aacctgaagtatgcaagttat 837 ||||||||||||||||||||| Sbjct: 30886 aacctgaagtatgcaagttat 30906
>emb|AL591462.5| Zebrafish DNA sequence from clone BUSM1-204D19 in linkage group 6, complete sequence Length = 77242 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 817 aacctgaagtatgcaagttat 837 ||||||||||||||||||||| Sbjct: 51665 aacctgaagtatgcaagttat 51645
>gb|AC154517.2| Mus musculus BAC clone RP24-85L11 from chromosome 12, complete sequence Length = 167631 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 661 ttcatctgtggtagctgaagc 681 ||||||||||||||||||||| Sbjct: 106249 ttcatctgtggtagctgaagc 106229
>dbj|AP004376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0481F05 Length = 139739 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 101177 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 101236 Query: 464 tactt 468 ||||| Sbjct: 101237 tactt 101241
>gb|AC117471.6| Homo sapiens 3 BAC RP11-558J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82165 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 968 atctttttctttaaaataatt 988 ||||||||||||||||||||| Sbjct: 73786 atctttttctttaaaataatt 73806
>dbj|AP004557.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0028A08 Length = 150818 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 27263 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 27322 Query: 464 tactt 468 ||||| Sbjct: 27323 tactt 27327
>dbj|AK110869.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-E04, full insert sequence Length = 2144 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 254 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 313 Query: 464 tactt 468 ||||| Sbjct: 314 tactt 318
>dbj|AK103460.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129L23, full insert sequence Length = 780 Score = 42.1 bits (21), Expect = 4.0 Identities = 54/65 (83%) Strand = Plus / Plus Query: 404 gagcatgaacagaaggtaaacagataccaagctgaacttgcagcacgcatcaaggccaaa 463 ||||||||| ||||||| |||| ||| || |||| |||||||| || | ||||||||| Sbjct: 201 gagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaa 260 Query: 464 tactt 468 ||||| Sbjct: 261 tactt 265
>ref|XM_313095.2| Anopheles gambiae str. PEST ENSANGP00000012870 (ENSANGG00000010381), partial mRNA Length = 1767 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 802 ctgaagacgtgcaacaacctgaagt 826 |||||||||||||| |||||||||| Sbjct: 787 ctgaagacgtgcaagaacctgaagt 811
>emb|AL591374.5| Zebrafish DNA sequence from clone BUSM1-204B6 in linkage group 6, complete sequence Length = 102137 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 817 aacctgaagtatgcaagttat 837 ||||||||||||||||||||| Sbjct: 46915 aacctgaagtatgcaagttat 46935
>gb|AY109215.1| Zea mays PCO061564 mRNA sequence Length = 1316 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 201 ccgtcgccggcttcttctcccccgtcgca 229 |||||||||||||||||| ||||| |||| Sbjct: 159 ccgtcgccggcttcttctgccccgccgca 131
>emb|BX293986.7| Mouse DNA sequence from clone RP24-492P10 on chromosome X, complete sequence Length = 114458 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 814 aacaacctgaagtatgcaagt 834 ||||||||||||||||||||| Sbjct: 108642 aacaacctgaagtatgcaagt 108622
>emb|BX294368.7| Zebrafish DNA sequence from clone CH211-244N12 in linkage group 6, complete sequence Length = 147484 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 817 aacctgaagtatgcaagttat 837 ||||||||||||||||||||| Sbjct: 132213 aacctgaagtatgcaagttat 132193 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,894,804 Number of extensions: 9572977 Number of successful extensions: 183148 Number of sequences better than 10.0: 36 Number of HSP's gapped: 183146 Number of HSP's successfully gapped: 38 Length of query: 1069 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1046 Effective length of database: 18,503,978,556 Effective search space: 19355161569576 Effective search space used: 19355161569576 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)