>O80536:PIF3_ARATH Phytochrome-interacting factor 3 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 524
 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 28/62 (45%), Positives = 44/62 (70%)
 Frame = +2

Query: 905  AKRGCATHPRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQ 1084
            +KR  +    +++ER RR RI+EK+R LQ+L+PN +K    S MLD A+E+++ LQ Q+Q
Sbjct: 339  SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKAS-MLDEAIEYLKSLQLQVQ 397

Query: 1085 VM 1090
            +M
Sbjct: 398  IM 399

>Q9FUA4:SPT_ARATH Transcription factor SPATULA - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 373

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 45/62 (72%)
 Frame = +2

Query: 905  AKRGCATHPRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQ 1084
            +KR  A    +++E+ RR+RI+EK++ LQ L+PN +K T  + MLD A+E+++ LQ Q+Q
Sbjct: 193  SKRCRAAEVHNLSEKRRRSRINEKMKALQSLIPNSNK-TDKASMLDEAIEYLKQLQLQVQ 251

Query: 1085 VM 1090
            ++
Sbjct: 252  ML 253

>Q9LXD8:BHL43_ARATH Basic helix-loop-helix protein 43 - Arabidopsis thaliana (Mouse-ear|
            cress)
          Length = 224

 Score = 47.8 bits (112), Expect = 1e-04
 Identities = 24/56 (42%), Positives = 39/56 (69%)
 Frame = +2

Query: 929  PRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQVMKH 1096
            P+S+A R RR RISE++R LQ LVP   K   T+ MLD A+ +++ L+ Q++++ +
Sbjct: 129  PQSVAARHRRERISERIRILQRLVPGGTKM-DTASMLDEAIRYVKFLKRQIRLLNN 183

>Q7XAQ6:LAX_ORYSJ Transcription factor LAX PANICLE - Oryza sativa subsp. japonica|
            (Rice)
          Length = 215

 Score = 46.2 bits (108), Expect = 4e-04
 Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 5/66 (7%)
 Frame = +2

Query: 920  ATHPRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQL-----Q 1084
            +T P+S+A RERR RIS++ R L+ LVP   K  + S ML+ A+ +++ L++Q+      
Sbjct: 41   STDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVS-MLEQAIHYVKFLKAQVTLHQAA 99

Query: 1085 VMKHEQ 1102
            +++HE+
Sbjct: 100  LVQHEE 105

>Q9FE22:HFR1_ARATH Long hypocotyl in far-red 1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 292

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 23/48 (47%), Positives = 32/48 (66%)
 Frame = +2

Query: 947  RERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQVM 1090
            R R  ++S K+RKLQ LVPN  K T    +LD  +E+++ LQ QLQ+M
Sbjct: 144  RRRDEKMSNKMRKLQQLVPNCHK-TDKVSVLDKTIEYMKNLQLQLQMM 190

>O81313:IND_ARATH Protein INDEHISCENT - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 169

 Score = 42.7 bits (99), Expect = 0.004
 Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
 Frame = +2

Query: 929  PRSIAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQVMK-HEQ 1102
            P+++  R RR RISEK+R L+ +VP   K   T+ MLD A+ + + L+ Q+++++ H Q
Sbjct: 93   PQTVVARRRRERISEKIRILKRIVPGGAKM-DTASMLDEAIRYTKFLKRQVRILQPHSQ 150

>Q7KM13:HEY_DROME Hairy/enhancer-of-split related with YRPW motif protein - Drosophila|
            melanogaster (Fruit fly)
          Length = 425

 Score = 39.3 bits (90), Expect = 0.044
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
 Frame = +2

Query: 932  RSIAERERRTRISEKLRKLQDLVPNM-DKQTST----SDMLDLAVEHIRGLQSQ 1078
            R + E++RR RI+  L +L+ LVP+  +KQ S     +++L L VEH++ LQS+
Sbjct: 105  RGVIEKKRRDRINSSLTELKRLVPSAYEKQGSAKLEKAEILQLTVEHLKSLQSK 158

>O60548:FOXD2_HUMAN Forkhead box protein D2 - Homo sapiens (Human)|
          Length = 497

 Score = 35.4 bits (80), Expect = 0.64
 Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 20/136 (14%)
 Frame = -2

Query: 882 SCCCCACMYLSIPASSSDDELAMPL-----N*DS*PPRS--RVPMISLDSSHGPTMEKPP 724
           SCCC      S PA+ S+ +  + +          P RS  R P   L   H P  E+  
Sbjct: 5   SCCCEIMSSESSPAALSEADADIDVVGGGSGGGELPARSGPRAPRDVLPHGHEPPAEEAE 64

Query: 723 LLPLAEKERDTGCS--PPECAAARTTSAPGNKEAPSEIRERCAAVCGP-----------P 583
                ++E   GCS   P   A+R  +A      P     R AA  GP           P
Sbjct: 65  ADLAEDEEESGGCSDGEPRALASRGAAAAAGSPGPGAAAARGAAGPGPGPPSGGAATRSP 124

Query: 582 LVKLSWDFIFVLLLVL 535
           LVK  + +I ++ + +
Sbjct: 125 LVKPPYSYIALITMAI 140

>Q9FT81:TT8_ARATH Protein TRANSPARENT TESTA 8 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 518

 Score = 35.0 bits (79), Expect = 0.84
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 938  IAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLA--VEHIRGLQSQLQVMKHEQ 1102
            +AER RR +++EK   L+ +VP + K    S + D    V H+R    +L+   HEQ
Sbjct: 366  VAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHELENTHHEQ 422

>Q9HQJ2:RS9_HALSA 30S ribosomal protein S9P - Halobacterium salinarium (Halobacterium|
            halobium)
          Length = 132

 Score = 35.0 bits (79), Expect = 0.84
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 820  ELVVAGAGRDGQVHAGAAAAGPGWVQGAGQARLRDAPEE-HR*EGTQDEDQREAQEAAGP 996
            ++ VAG G  GQ  A   A   G V+  G A LRDA  E  R     D  QRE+++  GP
Sbjct: 62   DIDVAGGGFAGQADAVRTAIARGLVEHYGDAELRDAFREFDRSLLVNDVRQRESKKWGGP 121

Query: 997  SAQ 1005
             A+
Sbjct: 122  GAR 124

>Q39204:RAP1_ARATH Transcription factor AtMYC2 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 623

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 20/56 (35%), Positives = 36/56 (64%)
 Frame = +2

Query: 941  AERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQVMKHEQDK 1108
            AER+RR +++++   L+ +VPN+ K    S +L  A+ +I  L+S  +V+K E +K
Sbjct: 456  AERQRREKLNQRFYALRAVVPNVSKMDKAS-LLGDAIAYINELKS--KVVKTESEK 508

>O08789:MNT_MOUSE Max-binding protein MNT - Mus musculus (Mouse)|
          Length = 591

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 944  ERERRTRISEKLRKLQDLVPNMD-KQTSTSDMLDLAVEHIRGLQSQLQVMKHEQDK 1108
            E+ RR  + E    L+  +PN+D K+TS   +L  A+ +I+ L+ + +  +HE ++
Sbjct: 231  EKNRRAHLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMER 286

>Q99583:MNT_HUMAN Max-binding protein MNT - Homo sapiens (Human)|
          Length = 582

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 944  ERERRTRISEKLRKLQDLVPNMD-KQTSTSDMLDLAVEHIRGLQSQLQVMKHEQDK 1108
            E+ RR  + E    L+  +PN+D K+TS   +L  A+ +I+ L+ + +  +HE ++
Sbjct: 229  EKNRRAHLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMER 284

>Q60485:ACRBP_CAVPO Acrosin-binding protein precursor - Cavia porcellus (Guinea pig)|
          Length = 543

 Score = 33.9 bits (76), Expect = 1.9
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +1

Query: 874  AAGPGWVQGAGQARLRDAPEEHR*EGTQDEDQREAQEAAGPSAQHGQANEHLGHVGPRG* 1053
            AAG    QG  Q +     E  + +G + E+Q E QE  G   +     + LG VG  G 
Sbjct: 192  AAGHKQEQGQEQHKQDPTQEHKQDDGQEQEEQEEEQEEEGKQEEGQSVEDMLGRVGRAGL 251

Query: 1054 AHQGPPEP 1077
                 P+P
Sbjct: 252  RIGSEPKP 259

>P33485:VNUA_PRVKA Probable nuclear antigen - Pseudorabies virus (strain Kaplan) (PRV)|
          Length = 1733

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 39/119 (32%), Positives = 43/119 (36%), Gaps = 15/119 (12%)
 Frame = +1

Query: 835  GAGRDGQVHAGAA----AAGPGWVQGAGQARLRDAPEEHR*EGTQDEDQR----EAQEAA 990
            G G  G+ H G        GPG + GAG      A    R  G  DE  R         A
Sbjct: 1039 GLGEPGRGHVGRGEEGRGVGPGGLAGAGPVH---AVAHQRRHGAGDEGDRVRGLPPLGRA 1095

Query: 991  GPS---AQHGQANEHL----GHVGPRG*AHQGPPEPAAGHEARAGQMYLLQQALSNLAG 1146
            GP    A+  Q   HL    G  G RG   +G PE       RAGQ  L   A    AG
Sbjct: 1096 GPGDRVAEREQRGRHLLEAGGPEGGRGAGGRGQPE-------RAGQQALEDAAAGQDAG 1147

>Q7Z5J4:RAI1_HUMAN Retinoic acid-induced protein 1 - Homo sapiens (Human)|
          Length = 1906

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 38/142 (26%), Positives = 54/142 (38%), Gaps = 11/142 (7%)
 Frame = -2

Query: 1011 SMLGTRSCSFLSFSLILVLRSLSAMLLGCVAQPRLARTLNPTW----------SCCCCAC 862
            S   + S S  SFSL     SL+ +  G + QPR +  L+ T           S  C  C
Sbjct: 1628 SSSASSSSSSSSFSLDAAGASLATLPGGSILQPRPSLPLSSTMHLGPVVSKALSTSCLVC 1687

Query: 861  MYLSIPASSSD-DELAMPLN*DS*PPRSRVPMISLDSSHGPTMEKPPLLPLAEKERDTGC 685
                 PA+  D  +L  P   +   P+ +  +       G   E    LPL    +    
Sbjct: 1688 CLCQNPANFKDLGDLCGPYYPEHCLPKKKPKLKEKVRPEGTCEEAS--LPLERTLKG--- 1742

Query: 684  SPPECAAARTTSAPGNKEAPSE 619
              PECAAA T   P   + P++
Sbjct: 1743 --PECAAAATAGKPPRPDGPAD 1762

>Q0VH32:MNT_XENLA Max-binding protein MNT - Xenopus laevis (African clawed frog)|
          Length = 574

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +2

Query: 944  ERERRTRISEKLRKLQDLVPNMD-KQTSTSDMLDLAVEHIRGLQSQLQVMKHEQDK 1108
            E+ RR  + E    L+  +PN+D K+TS   +L  A+ +I+ L+ + +  +HE ++
Sbjct: 232  EKNRRAHLKECFETLKRNIPNVDDKKTSNLSVLRSALRYIQSLKRKEKEYEHEMER 287

>P14780:MMP9_HUMAN Matrix metalloproteinase-9 precursor - Homo sapiens (Human)|
          Length = 707

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 23/76 (30%)
 Frame = +2

Query: 2   HLHHPRPA*D-RPHQYSTPKHTRRPAIAPARPSTTH----------------------AT 112
           HL+ PRP  + RP   +TP+ T  P + P  P T H                      A 
Sbjct: 441 HLYGPRPEPEPRPPTTTTPQPTAPPTVCPTGPPTVHPSERPTAGPTGPPSAGPTGPPTAG 500

Query: 113 PSIDPPVRVRPLVDAC 160
           PS    V + P+ DAC
Sbjct: 501 PSTATTVPLSPVDDAC 516

>P46804:SPD2_NEPCL Spidroin-2 - Nephila clavipes (Golden silk orbweaver)|
          Length = 627

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 27/81 (33%), Positives = 30/81 (37%)
 Frame = +1

Query: 862  AGAAAAGPGWVQGAGQARLRDAPEEHR*EGTQDEDQREAQEAAGPSAQHGQANEHLGHVG 1041
            A AAAAGPG      Q     AP +    G        A  AAGP   +G   +  G   
Sbjct: 386  AAAAAAGPGGYGPGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGG-YGPGQQGPGGYA 444

Query: 1042 PRG*AHQGPPEPAAGHEARAG 1104
            P      GP   AA   A AG
Sbjct: 445  PGQQGPSGPGSAAAAAAAAAG 465

>Q9LSE2:ICE1_ARATH Transcription factor ICE1 - Arabidopsis thaliana (Mouse-ear cress)|
          Length = 494

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 17/64 (26%), Positives = 37/64 (57%)
 Frame = +2

Query: 938  IAERERRTRISEKLRKLQDLVPNMDKQTSTSDMLDLAVEHIRGLQSQLQVMKHEQDKCTC 1117
            +AER RR +++++L  L+ +VP + K    S + D A+++++ L  ++  + +E +    
Sbjct: 310  MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGD-AIDYLKELLQRINDLHNELESTPP 368

Query: 1118 CSKP 1129
             S P
Sbjct: 369  GSLP 372

>Q96NY7:CLIC6_HUMAN Chloride intracellular channel 6 - Homo sapiens (Human)|
          Length = 704

 Score = 32.0 bits (71), Expect = 7.1
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +1

Query: 865  GAAAAGPGWVQG-AGQARLRDAPEEHR*EGTQDEDQREAQEAAGPSAQHGQANEHLGHVG 1041
            G+  A PG  +  AG+ R+ D P++   E  +DE++RE         +     E      
Sbjct: 341  GSEEAAPGDARADAGEDRVGDGPQQ---EPGEDEERRERSPEGPREEEAAGGEEESPDSS 397

Query: 1042 PRG*AHQGPPEPAA 1083
            P G A +G  EP A
Sbjct: 398  PHGEASRGAAEPEA 411

>Q8BH27:MEGF9_MOUSE Multiple epidermal growth factor-like domains 9 precursor - Mus|
           musculus (Mouse)
          Length = 600

 Score = 31.6 bits (70), Expect = 9.3
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
 Frame = -2

Query: 840 SSSDDELAMPLN*DS*PPRSRVPMISL------DSSHGPTMEKPPLLPLAEKERDTGCSP 679
           S+   E+  PL   + P  +  P + L      +  H PT E PP  P       T   P
Sbjct: 92  SAGSPEIIPPLRTSAQPAATPFPALDLSPATPSEDGHTPTTESPPSRPAPTTLASTVGQP 151

Query: 678 PECA---AARTTSAPGNKEAPSEIR 613
           P  +    A+ +S PG   A S  R
Sbjct: 152 PTTSVVTTAQASSTPGTPTAESPDR 176


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 227,090,012
Number of extensions: 4530087
Number of successful extensions: 15473
Number of sequences better than 10.0: 22
Number of HSP's gapped: 15411
Number of HSP's successfully gapped: 22
Length of query: 508
Length of database: 100,686,439
Length adjustment: 118
Effective length of query: 390
Effective length of database: 68,319,629
Effective search space: 26644655310
Effective search space used: 26644655310
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)