Clone Information

BLAST Search Result

Clone Name	FLbaf51e24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	O26137:RL34_METTH 50S ribosomal protein L34e - Methanobacterium ...	35	2.0
2	P37173:TGFR2_HUMAN TGF-beta receptor type-2 precursor - Homo sap...	33	5.8
3	P13368:7LESS_DROME Protein sevenless - Drosophila melanogaster (...	33	7.5

>O26137:RL34_METTH 50S ribosomal protein L34e - Methanobacterium thermoautotrophicum|
          Length = 88
 Score = 35.0 bits (79), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 294 VVHHTKRKTSWHLCHGCGRPAHKLLRTR 211
           V H+ ++K S H+C GCG+P H + R R
Sbjct: 24  VTHYRRKKPSKHVCAGCGKPLHGVPRGR 51

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>P37173:TGFR2_HUMAN TGF-beta receptor type-2 precursor - Homo sapiens (Human)|
          Length = 567

 Score = 33.5 bits (75), Expect = 5.8
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 1341 SSTIAH*IQSTIAKP-ITNFSRGLLTFPQICYCCIVQFQSCPRTTSIQQPRSLVQPISES 1165
            +STI   +Q ++    I   + G + FPQ+C  C V+F +C    S     S+   I E 
Sbjct: 21   ASTIPPHVQKSVNNDMIVTDNNGAVKFPQLCKFCDVRFSTCDNQKSCMSNCSITS-ICEK 79

Query: 1164 PRSQC 1150
            P+  C
Sbjct: 80   PQEVC 84

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>P13368:7LESS_DROME Protein sevenless - Drosophila melanogaster (Fruit fly)|
          Length = 2554

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 25/89 (28%), Positives = 38/89 (42%)
 Frame = +1

Query: 664 MVKTMLPWNIDSLYSSNALSVCFGIDLRQLSTMLHH*GARTTVHQDYPENHTRALDQSKV 843
           +V+ +  W+  +  +  ++     I  R  STM HH   R        E H   +D+  V
Sbjct: 155 VVEKVAIWHKHAAAAPPSIVEGIAISSRPQSTMAHHPDDRDRDRDPSEEQH--GVDERMV 212

Query: 844 LLRLLRSCTFFSLVESSLFMQSSHMGIFC 930
           L R+ R C    +VE  LF+     GI C
Sbjct: 213 LERVTRDCVQRCIVEEDLFL--DEFGIQC 239


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 553,138,503
Number of extensions: 12003015
Number of successful extensions: 27119
Number of sequences better than 10.0: 3
Number of HSP's gapped: 27108
Number of HSP's successfully gapped: 3
Length of query: 1070
Length of database: 100,686,439
Length adjustment: 124
Effective length of query: 946
Effective length of database: 66,673,859
Effective search space: 63073470614
Effective search space used: 63073470614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result