>Q0MQH5:NDUS6_PONPY NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Pongo pygmaeus (Orangutan)
          Length = 124
 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI E P  +VE R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDHH 444
            Q HH
Sbjct: 120 RQHHH 124

>Q0MQH7:NDUS6_PANTR NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Pan troglodytes (Chimpanzee)
          Length = 124

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI E P  +VE R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDHH 444
            Q HH
Sbjct: 120 RQHHH 124

>O75380:NDUS6_HUMAN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Homo sapiens (Human)
          Length = 124

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI E P  +VE R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDHH 444
            Q HH
Sbjct: 120 RQHHH 124

>P52503:NDUS6_MOUSE NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Mus musculus (Mouse)
          Length = 116

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI + P  +VE RI AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVEHRIIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 111

Query: 430 VQDHH 444
            Q HH
Sbjct: 112 KQHHH 116

>P52504:NDUS6_RAT NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Rattus norvegicus (Rat)
          Length = 116

 Score = 51.2 bits (121), Expect = 3e-06
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI + P  +V+ RI AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 53  KEVNENFAIDLIAQQPVNEVDRRIIACDGGGG-ALGHPKVYINLDKETKTGTCAYCGLQF 111

Query: 430 VQDHH 444
            Q HH
Sbjct: 112 KQQHH 116

>P23934:NDUS6_BOVIN NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Bos taurus (Bovine)
          Length = 124

 Score = 49.7 bits (117), Expect = 1e-05
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI E P  +V  R+ +C+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSQVGSRVISCDGGGG-ALGHPRVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDHH 444
            Q HH
Sbjct: 120 RQQHH 124

>Q0MQH6:NDUS6_GORGO NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Gorilla gorilla gorilla
           (Lowland gorilla)
          Length = 124

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPA-VCKYCGLRY 429
           ++ ++   ++LI E P  +VE R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDH 441
            Q H
Sbjct: 120 RQHH 123

>Q4R5X8:NDUS6_MACFA NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Macaca fascicularis (Crab
           eating macaque) (Cynomolgus monkey)
          Length = 124

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +1

Query: 253 QDTSKKSPMELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEA-PAVCKYCGLRY 429
           ++ ++   ++LI E P  +V+ R+ AC+G    ALGHP  YI LD E     C YCGL++
Sbjct: 61  KEVNENFAIDLIAEQPVSEVQTRVIACDGGGG-ALGHPKVYINLDKETKTGTCGYCGLQF 119

Query: 430 VQDHH 444
            Q  H
Sbjct: 120 RQHPH 124

>Q19724:NDUS6_CAEEL Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 6,|
           mitochondrial precursor - Caenorhabditis elegans
          Length = 140

 Score = 47.0 bits (110), Expect = 7e-05
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +1

Query: 256 DTSKKS-----PMELINEVPPIKV-EGRIAACEGDKNPALGHPIEYICLDLEAPAVCKYC 417
           D SKKS      M LI++ PP    + R+  C+G  +PALGHP  YI LD      C YC
Sbjct: 60  DISKKSVNPNVAMHLIDQRPPEDCGDKRVVFCDGG-HPALGHPKVYINLDKPGVHACGYC 118

Query: 418 GLRYVQDH 441
           G R+   H
Sbjct: 119 GNRFYNSH 126

>Q5AUI1:LBSA_EMENI Lactobacillus shifted protein - Emericella nidulans (Aspergillus|
           nidulans)
          Length = 213

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 22/56 (39%), Positives = 32/56 (57%)
 Frame = +1

Query: 277 MELINEVPPIKVEGRIAACEGDKNPALGHPIEYICLDLEAPAVCKYCGLRYVQDHH 444
           +ELI++ P   V+ +I +C+G   P LGHP  +I  D      C YCGL +  +HH
Sbjct: 120 IELIHKQPVRWVKDKIVSCDGGGGP-LGHPRIFINTDKPEIVPCGYCGLPFAHEHH 174

>Q84Q77:HSP23_ORYSJ 17.4 kDa class I heat shock protein 3 - Oryza sativa subsp.|
           japonica (Rice)
          Length = 161

 Score = 33.1 bits (74), Expect = 0.97
 Identities = 22/62 (35%), Positives = 26/62 (41%)
 Frame = -3

Query: 318 PFNLDRWHLIDQFHWRFLACVLHPFGGVASNDGRSADCLPRGEAPRRASVAGAG*GSKER 139
           PF+LD W   D F          PFG   S+ G      PRG +   A+ AGA    KE 
Sbjct: 12  PFSLDLWDPFDGF----------PFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKET 61

Query: 138 RE 133
            E
Sbjct: 62  PE 63

>Q84Q72:HSP24_ORYSJ 17.4 kDa class I heat shock protein 4 - Oryza sativa subsp.|
           japonica (Rice)
          Length = 161

 Score = 31.6 bits (70), Expect = 2.8
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -3

Query: 318 PFNLDRWHLIDQFHWRFLACVLHPFGGVASNDGRSADCLPRGEAPRRASVAGAG*GSKER 139
           PF+LD W   D F          PFG  + + G      PRG +   A+ AGA    KE 
Sbjct: 12  PFSLDLWDPFDGF----------PFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKET 61

Query: 138 RE 133
            E
Sbjct: 62  PE 63

>Q01397:DYNA_NEUCR Dynactin, 150 kDa isoform - Neurospora crassa|
          Length = 1300

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = +2

Query: 50  KNSSPFLLTRLAYPSFRYQPWRPQRGGCSRRSLEP*PAPATLARRGASPRGRQSALRPSL 229
           ++ +P   T+ A P+ R +P        SR S+ P P P T   R   P       RPS+
Sbjct: 96  RSGTPSTTTKPAGPTTRTRPSL----STSRHSMGPPPTPTTRTTR--KPSVSSVGTRPSI 149

Query: 230 EATPPNGCR 256
            AT P G R
Sbjct: 150 GATRPVGGR 158

>Q02294:CAC1B_RAT Voltage-dependent N-type calcium channel subunit alpha-1B - Rattus|
            norvegicus (Rat)
          Length = 2336

 Score = 30.0 bits (66), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 180  GAGLRHGEGSRRCGRRWKPHRQMDAGHKQEISNGTDQ 290
            G+GL HGEGS  C R  K  R      +Q  S+ +++
Sbjct: 2085 GSGLPHGEGSTGCRRERKQERGRSQERRQPSSSSSEK 2121


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 123,389,001
Number of extensions: 2814514
Number of successful extensions: 7451
Number of sequences better than 10.0: 14
Number of HSP's gapped: 7442
Number of HSP's successfully gapped: 14
Length of query: 224
Length of database: 100,686,439
Length adjustment: 109
Effective length of query: 115
Effective length of database: 70,788,284
Effective search space: 8140652660
Effective search space used: 8140652660
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)