ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51d07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY220734.1| Hordeum vulgare pathogenesis-related protein 10 (PR-10) mRNA, complete cds Length = 866 Score = 872 bits (440), Expect = 0.0 Identities = 548/584 (93%) Strand = Plus / Plus Query: 34 cagcagcgctagtgtgcagcgagccagtgacagacggacaagaacaagatggtcgtcggc 93 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 15 cagcagcgctagtgtgcagcgagccagtgaccgacggacaagaacaagatggtcgccggc 74 Query: 94 tgtgtcatcaccgagcagtgcgccctggcggtgtcgacagagcggctgtggaaggtggtc 153 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 75 tgtgtcatcaccgagcagtgtgccctggcggtgtcgacagagcggctgtggaaggtggtc 134 Query: 154 tactccggcgaggacacggccgccctgcccaaggcctgcgcaggattcatcgacgccgtg 213 | ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| Sbjct: 135 ttctccggcgaggacacggccgccctgcccaaggcctgcgcgggcttcatcgacgttgtg 194 Query: 214 gacgtcgagggcgacggcggacccggcagcgtcttcaccatgacgctcagcccggcggcg 273 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 195 gacgtcgagggcgacggcggacccggcagcgtcttcaccatgacgctcagtccggcggcg 254 Query: 274 gcggagctgtcaggctcggacgtgatgaagagccgcgtggtggcgcgcgacaacgcggcc 333 ||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||| Sbjct: 255 gcggagctgtcaggctcgggcgtgatgaggagccgcgtgatggcccgcgacaacgcggct 314 Query: 334 agggtgttcaagacagaggtgctggagggcgacaaggtaagtggccagctcaagtcacag 393 |||||||||||||| ||| | |||||||||| |||||| || |||||||||||||| ||| Sbjct: 315 agggtgttcaagacggagatactggagggcggcaaggtgagcggccagctcaagtcgcag 374 Query: 394 gcggtcgagatgaagctcgaggcggccggggatggtgcttgcgtggcaaagctcagggta 453 | ||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| Sbjct: 375 gtggtcgagatgaagcttgaggcggccggggacggtgcttgtgtggcgaagctcagggtg 434 Query: 454 gagtacgagaggctggacggcggcggggcgctgtcggcggaggaccaggcggcgctcgcc 513 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 435 gagtacgagaggctcgacggcggcggggcgctgtcggcggaggaccaggcggcactcgcc 494 Query: 514 gccgggtacctcgacctgctcaagatggtcgaggcatacctggtcgcccatcctgccgag 573 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 495 gccgggtacctcgaccagctcaagatggtcgaggcatacctggtcgcccaccctgccgag 554 Query: 574 tacgcctaattaaaccaaaacgagaaacatcagaaataaatcaa 617 |||| ||||||||| ||| ||| |||||||||||||||||||| Sbjct: 555 tacgtctaattaaaacaacgcgacaaacatcagaaataaatcaa 598
>emb|CT832427.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI023K15, full insert sequence Length = 764 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 157 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 205 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 499 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 551
>ref|NM_001073527.1| Oryza sativa (japonica cultivar-group) Os12g0555200 (Os12g0555200) mRNA, complete cds Length = 806 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 158 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 206 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 500 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 552
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 22625479 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 22625527 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 22626840 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 22626892 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 22634534 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 22634586
>gb|AF274851.1|AF274851 Oryza sativa pathogenesis-related protein PR-10b (PR10b) gene, complete cds Length = 2308 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 456 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 504
>dbj|AK099157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O18, full insert sequence Length = 807 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 159 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 207 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 501 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 553
>dbj|AK070762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O19, full insert sequence Length = 807 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 159 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 207 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 501 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 553
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 128058 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 128106 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 129419 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 129471
>emb|AL845342.2|CNS08CB4 Oryza sativa chromosome 12, . BAC OSJNBa0027H05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 138368 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 176 ccctgcccaaggcctgcgcaggattcatcgacgccgtggacgtcgaggg 224 |||||||||||| |||||| ||||||||||||||||| || |||||||| Sbjct: 70599 ccctgcccaaggtctgcgccggattcatcgacgccgtcgaggtcgaggg 70647 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||| ||||| ||||||| ||||| ||||| || ||||| |||||||||||| Sbjct: 71960 tgctccagatgatcgaggcgtacctcgtcgctcaccctgctgagtacgcctaa 72012 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 79654 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 79706
>emb|CT828610.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025O07, full insert sequence Length = 853 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 524 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 576
>ref|NM_001073530.1| Oryza sativa (japonica cultivar-group) Os12g0555500 (Os12g0555500) mRNA, complete cds Length = 831 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 507 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 559
>gb|AF274850.1|AF274850 Oryza sativa pathogenesis-related protein PR-10a (PR10a) gene, complete cds Length = 2594 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 2239 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 2291
>dbj|AK071613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104B18, full insert sequence Length = 814 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 525 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 577
>dbj|D38170.1| Rice mRNA for probenazole-inducible protein PBZ1, complete cds Length = 833 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 507 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 559
>dbj|D82066.1| Oryza sativa gene for PBZ1, complete cds Length = 3188 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Plus Query: 530 tgctcaagatggtcgaggcatacctggtcgcccatcctgccgagtacgcctaa 582 ||||||||||| |||||| ||||| ||||| || |||||||| ||||||||| Sbjct: 2206 tgctcaagatgatcgaggactacctcgtcgctcaccctgccgaatacgcctaa 2258
>gb|AY310323.1| Streptomyces sp. FR-008 heptaene macrolide complex synthesis gene cluster, complete sequence Length = 138203 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 catcgacgccgtggacgtcgagggcg 226 ||||| |||||||||||||||||||| Sbjct: 97886 catcgccgccgtggacgtcgagggcg 97861 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 201 catcgacgccgtggacgtcgagggcg 226 ||||| |||||||||||||||||||| Sbjct: 104027 catcgccgccgtggacgtcgagggcg 104002
>gb|AC122533.4| Mus musculus BAC clone RP24-538L1 from chromosome 13, complete sequence Length = 159734 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 647 ataaataaataaagtaatatga 668 |||||||||||||||||||||| Sbjct: 77954 ataaataaataaagtaatatga 77933
>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete sequence Length = 193132 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 596 agaaacatcagaaataaatcaa 617 |||||||||||||||||||||| Sbjct: 32427 agaaacatcagaaataaatcaa 32448
>gb|CP000416.1| Lactobacillus brevis ATCC 367, complete genome Length = 2291220 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 70 gacaagaacaagatggtcgtc 90 ||||||||||||||||||||| Sbjct: 1114830 gacaagaacaagatggtcgtc 1114810
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 492 ggaggaccaggcggcgctcgccgcc 516 |||||||| |||||||||||||||| Sbjct: 4697629 ggaggacccggcggcgctcgccgcc 4697653
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 aggcggtcgagatgaagctcg 412 ||||||||||||||||||||| Sbjct: 225072 aggcggtcgagatgaagctcg 225092
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 ggcgacggcggacccggcagc 243 ||||||||||||||||||||| Sbjct: 3369020 ggcgacggcggacccggcagc 3369000
>gb|AC069218.13| Homo sapiens 3 BAC RP11-393N4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164007 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 638 atttgtcgcataaataaataaagtaatat 666 ||||||| |||||||||||||||||||| Sbjct: 85228 atttgtcaaataaataaataaagtaatat 85256
>gb|AC133781.4| Homo sapiens BAC clone RP11-756K13 from 2, complete sequence Length = 185571 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 641 tgtcgcataaataaataaagtaata 665 |||| |||||||||||||||||||| Sbjct: 134575 tgtctcataaataaataaagtaata 134551
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 gaggtgctggagggcgacaag 369 ||||||||||||||||||||| Sbjct: 6076739 gaggtgctggagggcgacaag 6076759
>gb|AC114730.5| Homo sapiens BAC clone RP13-925E23 from 2, complete sequence Length = 193894 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 641 tgtcgcataaataaataaagtaata 665 |||| |||||||||||||||||||| Sbjct: 130768 tgtctcataaataaataaagtaata 130792 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 106,879,910 Number of extensions: 7858130 Number of successful extensions: 203593 Number of sequences better than 10.0: 26 Number of HSP's gapped: 203593 Number of HSP's successfully gapped: 36 Length of query: 684 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 662 Effective length of database: 18,508,616,841 Effective search space: 12252704348742 Effective search space used: 12252704348742 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
