ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51d06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073728.1| Oryza sativa (japonica cultivar-group) Os12g0597600 (Os12g0597600) mRNA, partial cds Length = 2098 Score = 739 bits (373), Expect = 0.0 Identities = 825/975 (84%), Gaps = 3/975 (0%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 ||||||||||||||||| || || |||||||||| | ||||| || ||||||| ||| Sbjct: 786 gtaatgatttcagcaaaagatgaaccagatgcaccattacctcctgctgttgatggattg 845 Query: 717 ctcagagtacataatagaataacagatggtttggacagtgaaaccgaccaggctcagaaa 776 || ||||| || || | |||||||||||||| || ||||| | || || |||| Sbjct: 846 cttagagttcacaagcggataacagatggtttagatggtgaatctgatcaacctcaacgt 905 Query: 777 ggtgctagtcctgcagggccaacacggctacttgtgccagcttcccaagctggaagccta 836 | |||| || ||| |||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 906 gctgctggtactgtagggccaacacggctactggtgccagcttctcaagctggcagcctg 965 Query: 837 attggcaagcaaggaacaaccattaaatcaatacaggatgcctcaaagtgtgctctccgc 896 ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||| Sbjct: 966 attggcaagcaaggagcaaccattaaatccatacaggatgcttctaagtgtgttctccga 1025 Query: 897 attcttgagaatgtgccacctgtggcattaaatgatgacagagttgttgagatacagggt 956 |||||||| | ||| |||||||| ||||||| ||| ||| |||||||||||||||| ||| Sbjct: 1026 attcttgaaagtgtaccacctgttgcattaagtgacgaccgagttgttgagatacaaggt 1085 Query: 957 gaacctcatgatgttcacaaagcagtggaactgattgcaaaccatttgagaaagtttctt 1016 ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1086 gaacctctagatgtccacaaagcagtggaactgattgcaagtcatttaagaaaatttctt 1145 Query: 1017 gttgaccgtagtgttctccctttattcgaaatgcagatgaaagtgcacagtgcgcccaga 1076 |||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||| |||| Sbjct: 1146 gttgaccgcagtgtgctccctttgttcgaaatgcagatgaaagtgcacaatgcgcacaga 1205 Query: 1077 gagcaacctatgcctgctcctcagcagtggggtcctcctccaccctggagtcatccacca 1136 |||||||||||||| |||||||| |||||||||||||||||| ||| |||||||| || Sbjct: 1206 gagcaacctatgccacctcctcagacgtggggtcctcctccaccgtggggtcatccatca 1265 Query: 1137 aacattcctcccagtggcccaggttatggcgggaacccacattttatgccgccaaggcca 1196 ||| ||||||| |||||||||||||||| || || ||||| || ||||| || |||| Sbjct: 1266 aacgttcctcctggtggcccaggttatggtggtaatccacagttcatgcctcctcggcct 1325 Query: 1197 caagacagctattatcctcctcctaatgtgcaccatgtggaaaaacaaccgcactatggg 1256 |||||| |||||||||||||||| |||| | | ||| ||||| ||||| |||||||| Sbjct: 1326 caagaccactattatcctcctcctgatgtacctcctgtcgaaaagcaaccacactatgga 1385 Query: 1257 atttcttcatatggacgtgatgcaaatccaac---tgctgctcctacctcagggaatcaa 1313 |||||||||||||| ||||||||| ||| || |||| ||||| |||||||||||||| Sbjct: 1386 atttcttcatatggccgtgatgcacctcctactggtgctcctcctgcctcagggaatcaa 1445 Query: 1314 cacctatcgcatgggtcttctcaactttcgcaaaagatgcaagttcctctttcctatgct 1373 |||| | | ||||| ||||||||| | | || | |||||||||||||||||||| ||| Sbjct: 1446 cacccaccacatggttcttctcaaataacacacagcatgcaagttcctctttcctacgct 1505 Query: 1374 gatgctgtgattgggtctgctggtgccaatattagctacatccgcaagcatagtggtgca 1433 ||||| ||||||||| | |||||||| | ||| |||||||| |||| ||||||||||||| Sbjct: 1506 gatgccgtgattggggcagctggtgctagtatcagctacattcgcaggcatagtggtgca 1565 Query: 1434 acaataagtattcaagaaggtgttcctggggagatgacggtcgagattgcaggaagtgcc 1493 |||||||||||||| |||||||||||||| || ||||| || ||||| |||||||||| Sbjct: 1566 acaataagtattcaggaaggtgttcctggagaaatgactgtggagatatcaggaagtgct 1625 Query: 1494 tcacaagttcaaactgctcagcagctgatcaagaatttcatggccgaagcctctccccaa 1553 ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 1626 tcacaagttcaaactgcccagcaactgatcaagaatttcatggctgaagcttctccccaa 1685 Query: 1554 gttcctccaccaggtcccgctcctccctcccaaccagttgactcgggctacaactcatac 1613 | || |||| || ||| |||||||| | |||||||| ||| ||||||||| ||| ||| Sbjct: 1686 ggccccccacaagctcctgctcctcctgctcaaccagtcgacacgggctacagctcctac 1745 Query: 1614 gcgccgtatggagga 1628 | ||||| |||||| Sbjct: 1746 ccaccgtacggagga 1760 Score = 145 bits (73), Expect = 7e-31 Identities = 142/165 (86%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 455 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 514 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 515 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 574 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagc 655 ||||||||| | |||||||| |||||||| || ||||| ||||| Sbjct: 575 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagc 619
>dbj|AK066451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062H18, full insert sequence Length = 2099 Score = 739 bits (373), Expect = 0.0 Identities = 825/975 (84%), Gaps = 3/975 (0%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 ||||||||||||||||| || || |||||||||| | ||||| || ||||||| ||| Sbjct: 787 gtaatgatttcagcaaaagatgaaccagatgcaccattacctcctgctgttgatggattg 846 Query: 717 ctcagagtacataatagaataacagatggtttggacagtgaaaccgaccaggctcagaaa 776 || ||||| || || | |||||||||||||| || ||||| | || || |||| Sbjct: 847 cttagagttcacaagcggataacagatggtttagatggtgaatctgatcaacctcaacgt 906 Query: 777 ggtgctagtcctgcagggccaacacggctacttgtgccagcttcccaagctggaagccta 836 | |||| || ||| |||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 907 gctgctggtactgtagggccaacacggctactggtgccagcttctcaagctggcagcctg 966 Query: 837 attggcaagcaaggaacaaccattaaatcaatacaggatgcctcaaagtgtgctctccgc 896 ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||| Sbjct: 967 attggcaagcaaggagcaaccattaaatccatacaggatgcttctaagtgtgttctccga 1026 Query: 897 attcttgagaatgtgccacctgtggcattaaatgatgacagagttgttgagatacagggt 956 |||||||| | ||| |||||||| ||||||| ||| ||| |||||||||||||||| ||| Sbjct: 1027 attcttgaaagtgtaccacctgttgcattaagtgacgaccgagttgttgagatacaaggt 1086 Query: 957 gaacctcatgatgttcacaaagcagtggaactgattgcaaaccatttgagaaagtttctt 1016 ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1087 gaacctctagatgtccacaaagcagtggaactgattgcaagtcatttaagaaaatttctt 1146 Query: 1017 gttgaccgtagtgttctccctttattcgaaatgcagatgaaagtgcacagtgcgcccaga 1076 |||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||| |||| Sbjct: 1147 gttgaccgcagtgtgctccctttgttcgaaatgcagatgaaagtgcacaatgcgcacaga 1206 Query: 1077 gagcaacctatgcctgctcctcagcagtggggtcctcctccaccctggagtcatccacca 1136 |||||||||||||| |||||||| |||||||||||||||||| ||| |||||||| || Sbjct: 1207 gagcaacctatgccacctcctcagacgtggggtcctcctccaccgtggggtcatccatca 1266 Query: 1137 aacattcctcccagtggcccaggttatggcgggaacccacattttatgccgccaaggcca 1196 ||| ||||||| |||||||||||||||| || || ||||| || ||||| || |||| Sbjct: 1267 aacgttcctcctggtggcccaggttatggtggtaatccacagttcatgcctcctcggcct 1326 Query: 1197 caagacagctattatcctcctcctaatgtgcaccatgtggaaaaacaaccgcactatggg 1256 |||||| |||||||||||||||| |||| | | ||| ||||| ||||| |||||||| Sbjct: 1327 caagaccactattatcctcctcctgatgtacctcctgtcgaaaagcaaccacactatgga 1386 Query: 1257 atttcttcatatggacgtgatgcaaatccaac---tgctgctcctacctcagggaatcaa 1313 |||||||||||||| ||||||||| ||| || |||| ||||| |||||||||||||| Sbjct: 1387 atttcttcatatggccgtgatgcacctcctactggtgctcctcctgcctcagggaatcaa 1446 Query: 1314 cacctatcgcatgggtcttctcaactttcgcaaaagatgcaagttcctctttcctatgct 1373 |||| | | ||||| ||||||||| | | || | |||||||||||||||||||| ||| Sbjct: 1447 cacccaccacatggttcttctcaaataacacacagcatgcaagttcctctttcctacgct 1506 Query: 1374 gatgctgtgattgggtctgctggtgccaatattagctacatccgcaagcatagtggtgca 1433 ||||| ||||||||| | |||||||| | ||| |||||||| |||| ||||||||||||| Sbjct: 1507 gatgccgtgattggggcagctggtgctagtatcagctacattcgcaggcatagtggtgca 1566 Query: 1434 acaataagtattcaagaaggtgttcctggggagatgacggtcgagattgcaggaagtgcc 1493 |||||||||||||| |||||||||||||| || ||||| || ||||| |||||||||| Sbjct: 1567 acaataagtattcaggaaggtgttcctggagaaatgactgtggagatatcaggaagtgct 1626 Query: 1494 tcacaagttcaaactgctcagcagctgatcaagaatttcatggccgaagcctctccccaa 1553 ||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 1627 tcacaagttcaaactgcccagcaactgatcaagaatttcatggctgaagcttctccccaa 1686 Query: 1554 gttcctccaccaggtcccgctcctccctcccaaccagttgactcgggctacaactcatac 1613 | || |||| || ||| |||||||| | |||||||| ||| ||||||||| ||| ||| Sbjct: 1687 ggccccccacaagctcctgctcctcctgctcaaccagtcgacacgggctacagctcctac 1746 Query: 1614 gcgccgtatggagga 1628 | ||||| |||||| Sbjct: 1747 ccaccgtacggagga 1761 Score = 145 bits (73), Expect = 7e-31 Identities = 142/165 (86%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 456 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 515 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 516 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 575 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagc 655 ||||||||| | |||||||| |||||||| || ||||| ||||| Sbjct: 576 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagc 620
>gb|AY111940.1| Zea mays CL14764_1 mRNA sequence Length = 665 Score = 244 bits (123), Expect = 1e-60 Identities = 183/203 (90%) Strand = Plus / Minus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 ||||||||||||||||||||||||||||||||||| ||| | |||||||||| ||| ||| Sbjct: 592 atgcaagttcctctttcctatgctgatgctgtgataggggcagctggtgccagtatcagc 533 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattcaagaaggtgttcctggggagatg 1469 |||||||||| ||||||||| ||||| ||||||||||||||||||| |||||| |||||| Sbjct: 532 tacatccgcaggcatagtggagcaactataagtattcaagaaggtgctcctggcgagatg 473 Query: 1470 acggtcgagattgcaggaagtgcctcacaagttcaaactgctcagcagctgatcaagaat 1529 || || |||||| |||||||||| |||||||| || |||||||| ||||| ||||||||| Sbjct: 472 acagtggagattacaggaagtgcttcacaagtacagactgctcaacagctaatcaagaat 413 Query: 1530 ttcatggccgaagcctctcccca 1552 |||||||| ||||| |||||||| Sbjct: 412 ttcatggctgaagcttctcccca 390
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 216 bits (109), Expect = 2e-52 Identities = 246/291 (84%), Gaps = 3/291 (1%) Strand = Plus / Plus Query: 1050 cagatgaaagtgcacagtgcgcccagagagcaacctatgcctgctcctcagcagtggggt 1109 |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 25130353 cagatgaaagtgcacaatgcgcacagagagcaacctatgccacctcctcagacgtggggt 25130412 Query: 1110 cctcctccaccctggagtcatccaccaaacattcctcccagtggcccaggttatggcggg 1169 ||||||||||| ||| |||||||| ||||| ||||||| |||||||||||||||| || Sbjct: 25130413 cctcctccaccgtggggtcatccatcaaacgttcctcctggtggcccaggttatggtggt 25130472 Query: 1170 aacccacattttatgccgccaaggccacaagacagctattatcctcctcctaatgtgcac 1229 || ||||| || ||||| || |||| |||||| |||||||||||||||| |||| | Sbjct: 25130473 aatccacagttcatgcctcctcggcctcaagaccactattatcctcctcctgatgtacct 25130532 Query: 1230 catgtggaaaaacaaccgcactatgggatttcttcatatggacgtgatgcaaatccaac- 1288 | ||| ||||| ||||| |||||||| |||||||||||||| ||||||||| ||| || Sbjct: 25130533 cctgtcgaaaagcaaccacactatggaatttcttcatatggccgtgatgcacctcctact 25130592 Query: 1289 --tgctgctcctacctcagggaatcaacacctatcgcatgggtcttctcaa 1337 |||| ||||| |||||||||||||||||| | | ||||| ||||||||| Sbjct: 25130593 ggtgctcctcctgcctcagggaatcaacacccaccacatggttcttctcaa 25130643 Score = 200 bits (101), Expect = 1e-47 Identities = 158/177 (89%) Strand = Plus / Plus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 |||||||||||||||||||| |||||||| ||||||||| | |||||||| | ||| ||| Sbjct: 25130765 atgcaagttcctctttcctacgctgatgccgtgattggggcagctggtgctagtatcagc 25130824 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattcaagaaggtgttcctggggagatg 1469 ||||| |||| ||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 25130825 tacattcgcaggcatagtggtgcaacaataagtattcaggaaggtgttcctggagaaatg 25130884 Query: 1470 acggtcgagattgcaggaagtgcctcacaagttcaaactgctcagcagctgatcaag 1526 || || ||||| |||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 25130885 actgtggagatatcaggaagtgcttcacaagttcaaactgcccagcaactgatcaag 25130941 Score = 161 bits (81), Expect = 1e-35 Identities = 126/141 (89%) Strand = Plus / Plus Query: 912 ccacctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgtt 971 |||||||| ||||||| ||| ||| |||||||||||||||| |||||||||| ||||| Sbjct: 25130130 ccacctgttgcattaagtgacgaccgagttgttgagatacaaggtgaacctctagatgtc 25130189 Query: 972 cacaaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgtt 1031 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 25130190 cacaaagcagtggaactgattgcaagtcatttaagaaaatttcttgttgaccgcagtgtg 25130249 Query: 1032 ctccctttattcgaaatgcag 1052 |||||||| |||||||||||| Sbjct: 25130250 ctccctttgttcgaaatgcag 25130270 Score = 149 bits (75), Expect = 4e-32 Identities = 204/247 (82%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 ||||||||||||||||| || || |||||||||| | ||||| || ||||||| ||| Sbjct: 25129213 gtaatgatttcagcaaaagatgaaccagatgcaccattacctcctgctgttgatggattg 25129272 Query: 717 ctcagagtacataatagaataacagatggtttggacagtgaaaccgaccaggctcagaaa 776 || ||||| || || | |||||||||||||| || ||||| | || || |||| Sbjct: 25129273 cttagagttcacaagcggataacagatggtttagatggtgaatctgatcaacctcaacgt 25129332 Query: 777 ggtgctagtcctgcagggccaacacggctacttgtgccagcttcccaagctggaagccta 836 | |||| || ||| |||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 25129333 gctgctggtactgtagggccaacacggctactggtgccagcttctcaagctggcagcctg 25129392 Query: 837 attggcaagcaaggaacaaccattaaatcaatacaggatgcctcaaagtgtgctctccgc 896 ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||| Sbjct: 25129393 attggcaagcaaggagcaaccattaaatccatacaggatgcttctaagtgtgttctccga 25129452 Query: 897 attcttg 903 ||||||| Sbjct: 25129453 attcttg 25129459 Score = 147 bits (74), Expect = 2e-31 Identities = 146/170 (85%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 25126431 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 25126490 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 25126491 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 25126550 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaa 660 ||||||||| | |||||||| |||||||| || ||||| ||||| |||| Sbjct: 25126551 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagcagtaa 25126600 Score = 63.9 bits (32), Expect = 2e-06 Identities = 86/104 (82%) Strand = Plus / Plus Query: 1525 agaatttcatggccgaagcctctccccaagttcctccaccaggtcccgctcctccctccc 1584 ||||||||||||| ||||| |||||||||| || |||| || ||| |||||||| | | Sbjct: 25131458 agaatttcatggctgaagcttctccccaaggccccccacaagctcctgctcctcctgctc 25131517 Query: 1585 aaccagttgactcgggctacaactcatacgcgccgtatggagga 1628 ||||||| ||| ||||||||| ||| ||| | ||||| |||||| Sbjct: 25131518 aaccagtcgacacgggctacagctcctacccaccgtacggagga 25131561
>emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121563 Score = 216 bits (109), Expect = 2e-52 Identities = 246/291 (84%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 1050 cagatgaaagtgcacagtgcgcccagagagcaacctatgcctgctcctcagcagtggggt 1109 |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 1126 cagatgaaagtgcacaatgcgcacagagagcaacctatgccacctcctcagacgtggggt 1067 Query: 1110 cctcctccaccctggagtcatccaccaaacattcctcccagtggcccaggttatggcggg 1169 ||||||||||| ||| |||||||| ||||| ||||||| |||||||||||||||| || Sbjct: 1066 cctcctccaccgtggggtcatccatcaaacgttcctcctggtggcccaggttatggtggt 1007 Query: 1170 aacccacattttatgccgccaaggccacaagacagctattatcctcctcctaatgtgcac 1229 || ||||| || ||||| || |||| |||||| |||||||||||||||| |||| | Sbjct: 1006 aatccacagttcatgcctcctcggcctcaagaccactattatcctcctcctgatgtacct 947 Query: 1230 catgtggaaaaacaaccgcactatgggatttcttcatatggacgtgatgcaaatccaac- 1288 | ||| ||||| ||||| |||||||| |||||||||||||| ||||||||| ||| || Sbjct: 946 cctgtcgaaaagcaaccacactatggaatttcttcatatggccgtgatgcacctcctact 887 Query: 1289 --tgctgctcctacctcagggaatcaacacctatcgcatgggtcttctcaa 1337 |||| ||||| |||||||||||||||||| | | ||||| ||||||||| Sbjct: 886 ggtgctcctcctgcctcagggaatcaacacccaccacatggttcttctcaa 836 Score = 200 bits (101), Expect = 1e-47 Identities = 158/177 (89%) Strand = Plus / Minus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 |||||||||||||||||||| |||||||| ||||||||| | |||||||| | ||| ||| Sbjct: 714 atgcaagttcctctttcctacgctgatgccgtgattggggcagctggtgctagtatcagc 655 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattcaagaaggtgttcctggggagatg 1469 ||||| |||| ||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 654 tacattcgcaggcatagtggtgcaacaataagtattcaggaaggtgttcctggagaaatg 595 Query: 1470 acggtcgagattgcaggaagtgcctcacaagttcaaactgctcagcagctgatcaag 1526 || || ||||| |||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 594 actgtggagatatcaggaagtgcttcacaagttcaaactgcccagcaactgatcaag 538 Score = 161 bits (81), Expect = 1e-35 Identities = 126/141 (89%) Strand = Plus / Minus Query: 912 ccacctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgtt 971 |||||||| ||||||| ||| ||| |||||||||||||||| |||||||||| ||||| Sbjct: 1349 ccacctgttgcattaagtgacgaccgagttgttgagatacaaggtgaacctctagatgtc 1290 Query: 972 cacaaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgtt 1031 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 1289 cacaaagcagtggaactgattgcaagtcatttaagaaaatttcttgttgaccgcagtgtg 1230 Query: 1032 ctccctttattcgaaatgcag 1052 |||||||| |||||||||||| Sbjct: 1229 ctccctttgttcgaaatgcag 1209 Score = 149 bits (75), Expect = 4e-32 Identities = 204/247 (82%) Strand = Plus / Minus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 ||||||||||||||||| || || |||||||||| | ||||| || ||||||| ||| Sbjct: 2266 gtaatgatttcagcaaaagatgaaccagatgcaccattacctcctgctgttgatggattg 2207 Query: 717 ctcagagtacataatagaataacagatggtttggacagtgaaaccgaccaggctcagaaa 776 || ||||| || || | |||||||||||||| || ||||| | || || |||| Sbjct: 2206 cttagagttcacaagcggataacagatggtttagatggtgaatctgatcaacctcaacgt 2147 Query: 777 ggtgctagtcctgcagggccaacacggctacttgtgccagcttcccaagctggaagccta 836 | |||| || ||| |||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 2146 gctgctggtactgtagggccaacacggctactggtgccagcttctcaagctggcagcctg 2087 Query: 837 attggcaagcaaggaacaaccattaaatcaatacaggatgcctcaaagtgtgctctccgc 896 ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||| Sbjct: 2086 attggcaagcaaggagcaaccattaaatccatacaggatgcttctaagtgtgttctccga 2027 Query: 897 attcttg 903 ||||||| Sbjct: 2026 attcttg 2020 Score = 147 bits (74), Expect = 2e-31 Identities = 146/170 (85%) Strand = Plus / Minus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 5048 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 4989 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 4988 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 4929 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaa 660 ||||||||| | |||||||| |||||||| || ||||| ||||| |||| Sbjct: 4928 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagcagtaa 4879
>emb|AL731743.2|CNS08C7S Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 93872 Score = 216 bits (109), Expect = 2e-52 Identities = 246/291 (84%), Gaps = 3/291 (1%) Strand = Plus / Minus Query: 1050 cagatgaaagtgcacagtgcgcccagagagcaacctatgcctgctcctcagcagtggggt 1109 |||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||| Sbjct: 70710 cagatgaaagtgcacaatgcgcacagagagcaacctatgccacctcctcagacgtggggt 70651 Query: 1110 cctcctccaccctggagtcatccaccaaacattcctcccagtggcccaggttatggcggg 1169 ||||||||||| ||| |||||||| ||||| ||||||| |||||||||||||||| || Sbjct: 70650 cctcctccaccgtggggtcatccatcaaacgttcctcctggtggcccaggttatggtggt 70591 Query: 1170 aacccacattttatgccgccaaggccacaagacagctattatcctcctcctaatgtgcac 1229 || ||||| || ||||| || |||| |||||| |||||||||||||||| |||| | Sbjct: 70590 aatccacagttcatgcctcctcggcctcaagaccactattatcctcctcctgatgtacct 70531 Query: 1230 catgtggaaaaacaaccgcactatgggatttcttcatatggacgtgatgcaaatccaac- 1288 | ||| ||||| ||||| |||||||| |||||||||||||| ||||||||| ||| || Sbjct: 70530 cctgtcgaaaagcaaccacactatggaatttcttcatatggccgtgatgcacctcctact 70471 Query: 1289 --tgctgctcctacctcagggaatcaacacctatcgcatgggtcttctcaa 1337 |||| ||||| |||||||||||||||||| | | ||||| ||||||||| Sbjct: 70470 ggtgctcctcctgcctcagggaatcaacacccaccacatggttcttctcaa 70420 Score = 200 bits (101), Expect = 1e-47 Identities = 158/177 (89%) Strand = Plus / Minus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 |||||||||||||||||||| |||||||| ||||||||| | |||||||| | ||| ||| Sbjct: 70298 atgcaagttcctctttcctacgctgatgccgtgattggggcagctggtgctagtatcagc 70239 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattcaagaaggtgttcctggggagatg 1469 ||||| |||| ||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct: 70238 tacattcgcaggcatagtggtgcaacaataagtattcaggaaggtgttcctggagaaatg 70179 Query: 1470 acggtcgagattgcaggaagtgcctcacaagttcaaactgctcagcagctgatcaag 1526 || || ||||| |||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct: 70178 actgtggagatatcaggaagtgcttcacaagttcaaactgcccagcaactgatcaag 70122 Score = 161 bits (81), Expect = 1e-35 Identities = 126/141 (89%) Strand = Plus / Minus Query: 912 ccacctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgtt 971 |||||||| ||||||| ||| ||| |||||||||||||||| |||||||||| ||||| Sbjct: 70933 ccacctgttgcattaagtgacgaccgagttgttgagatacaaggtgaacctctagatgtc 70874 Query: 972 cacaaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgtt 1031 ||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| Sbjct: 70873 cacaaagcagtggaactgattgcaagtcatttaagaaaatttcttgttgaccgcagtgtg 70814 Query: 1032 ctccctttattcgaaatgcag 1052 |||||||| |||||||||||| Sbjct: 70813 ctccctttgttcgaaatgcag 70793 Score = 149 bits (75), Expect = 4e-32 Identities = 204/247 (82%) Strand = Plus / Minus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 ||||||||||||||||| || || |||||||||| | ||||| || ||||||| ||| Sbjct: 71850 gtaatgatttcagcaaaagatgaaccagatgcaccattacctcctgctgttgatggattg 71791 Query: 717 ctcagagtacataatagaataacagatggtttggacagtgaaaccgaccaggctcagaaa 776 || ||||| || || | |||||||||||||| || ||||| | || || |||| Sbjct: 71790 cttagagttcacaagcggataacagatggtttagatggtgaatctgatcaacctcaacgt 71731 Query: 777 ggtgctagtcctgcagggccaacacggctacttgtgccagcttcccaagctggaagccta 836 | |||| || ||| |||||||||||||||||| ||||||||||| |||||||| ||||| Sbjct: 71730 gctgctggtactgtagggccaacacggctactggtgccagcttctcaagctggcagcctg 71671 Query: 837 attggcaagcaaggaacaaccattaaatcaatacaggatgcctcaaagtgtgctctccgc 896 ||||||||||||||| ||||||||||||| ||||||||||| || ||||||| |||||| Sbjct: 71670 attggcaagcaaggagcaaccattaaatccatacaggatgcttctaagtgtgttctccga 71611 Query: 897 attcttg 903 ||||||| Sbjct: 71610 attcttg 71604 Score = 147 bits (74), Expect = 2e-31 Identities = 146/170 (85%) Strand = Plus / Minus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 74632 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 74573 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 74572 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 74513 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaa 660 ||||||||| | |||||||| |||||||| || ||||| ||||| |||| Sbjct: 74512 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagcagtaa 74463 Score = 63.9 bits (32), Expect = 2e-06 Identities = 86/104 (82%) Strand = Plus / Minus Query: 1525 agaatttcatggccgaagcctctccccaagttcctccaccaggtcccgctcctccctccc 1584 ||||||||||||| ||||| |||||||||| || |||| || ||| |||||||| | | Sbjct: 69605 agaatttcatggctgaagcttctccccaaggccccccacaagctcctgctcctcctgctc 69546 Query: 1585 aaccagttgactcgggctacaactcatacgcgccgtatggagga 1628 ||||||| ||| ||||||||| ||| ||| | ||||| |||||| Sbjct: 69545 aaccagtcgacacgggctacagctcctacccaccgtacggagga 69502
>ref|NM_001057242.1| Oryza sativa (japonica cultivar-group) Os03g0627500 (Os03g0627500) mRNA, complete cds Length = 1940 Score = 174 bits (88), Expect = 8e-40 Identities = 172/200 (86%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 |||||||||||| ||||| ||||| ||||| || ||| ||||| | | |||| ||||| Sbjct: 416 gaaatggcctggttggccaggagagagtgtttttcgtatactgatcccagcccagaaggt 475 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 |||||| |||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct: 476 aggtgctatcattggccgcaaaggggagtttatcaaaaagatgtgtgaggagtctaaagc 535 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaatgatttcagc 670 |||||||| || ||||||||||| || ||||| ||||||||| | |||||||||||||| Sbjct: 536 tcgcataaaaatacttgatggcccgcctggtgtaccagaaagaacagtaatgatttcagc 595 Query: 671 aaaggacgagccagatgcac 690 |||||| ||||||||||||| Sbjct: 596 aaaggatgagccagatgcac 615 Score = 141 bits (71), Expect = 1e-29 Identities = 587/758 (77%), Gaps = 12/758 (1%) Strand = Plus / Plus Query: 795 ccaacacggctacttgtgccagcttcccaagctggaagcctaattggcaagcaaggaaca 854 |||||||| || || || ||||||||||||||||| ||||| ||||| || || ||| || Sbjct: 720 ccaacacgactgctagtaccagcttcccaagctggcagccttattgggaaacagggagca 779 Query: 855 accattaaatcaatacaggatgcctcaaagtgtgctctccgcattcttgagaatgtgcca 914 ||||||||||| || || ||| | ||||||| | | || ||| |||||| | |||| Sbjct: 780 accattaaatccattcaagattcttcaaagtccattgttcgtattgttgagactttgcct 839 Query: 915 cctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgttcac 974 | ||| ||| |||||||||| |||||||| |||||||| ||||| ||| || ||| || Sbjct: 840 cttgttgcactaaatgatgatagagttgtggagatacaaggtgagcctgttggtgtccag 899 Query: 975 aaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgttctc 1034 |||||| ||||| ||| || | || || ||||| |||||||||||||| |||||||| Sbjct: 900 aaagcactggaatcgatagccagtcacttaagaaaatttcttgttgaccgcagtgttctt 959 Query: 1035 cctttattcgaaatgcagatgaaagtgcacagtgcgcccagagagcaacctatgcctgct 1094 ||| | || ||| ||| |||||| |||||| ||| | || || ||| | ||| | ||| Sbjct: 960 cctctttttgaagggcaaatgaaaatgcacaatgcacagagggaacaagcaatggcagct 1019 Query: 1095 cctcagcagtggggtcctcctccaccctggagtcatccaccaa---acattcctcccagt 1151 ||||||| ||||| || |||| ||| ||| | | ||| |||| || | ||||| || Sbjct: 1020 cctcagccttggggcccacctcaaccttggggccctcctccaagccacctccctcctggt 1079 Query: 1152 ggcccaggttatggcgggaacccacattttatgccgccaaggccacaagacagctattat 1211 || ||||||||||| || | ||||| || ||||| |||||||| ||||||| |||||| Sbjct: 1080 ggtccaggttatggtggacatccacagttcatgcccccaaggccgcaagacaattattat 1139 Query: 1212 cctcctcctaatgtgcaccatgtggaaaaacaaccgcactatgggatttcttcatatgga 1271 ||||| ||| |||| | | | ||||||| || || ||||| || |||||| | |||||| Sbjct: 1140 cctccccctgatgtcccctctatggaaaagcagccacactacggtatttctgcctatgga 1199 Query: 1272 cgtgatgcaaatccaactgctgctcctacctcagggaatcaacacctatcgcatgggtct 1331 || || ||| ||||||| || | || | || |||||||||| | ||| |||| | || Sbjct: 1200 cgagaagca---ccaactggtgtttctgcttctgggaatcaaccaccatcacatgtggct 1256 Query: 1332 tctcaactttcgcaaaagatgcaagttcctctttcctatgctgatgctgtgattgggtct 1391 ||||| || | || || |||||| ||||||| ||||||||||||||||||||||| | Sbjct: 1257 tctcaggttacacacaacatgcaaattcctctctcctatgctgatgctgtgattggagca 1316 Query: 1392 gctggtgccaatattagctacatccgcaagcatagtggtgcaacaataagtattcaaga- 1450 |||||||| | ||||||||| || || | ||| |||||||||||| ||| |||||| || Sbjct: 1317 gctggtgctagtattagctatattcgtaggcacagtggtgcaacagtaactattcaggaa 1376 Query: 1451 -----aggtgttcctggggagatgacggtcgagattgcaggaagtgcctcacaagttcaa 1505 ||||| |||||||||||||| || ||||| || ||||| || ||||| ||| Sbjct: 1377 agcagaggtgcacctggggagatgacagttgagataattggtagtgcatcccaagtccaa 1436 Query: 1506 actgctcagcagctgatcaagaatttcatggccgaagc 1543 ||||| ||||| || || ||||||||||||| ||||| Sbjct: 1437 actgcccagcaactagtccagaatttcatggcagaagc 1474
>gb|BT018123.1| Zea mays clone EL01N0554B08.c mRNA sequence Length = 1358 Score = 174 bits (88), Expect = 8e-40 Identities = 346/432 (80%) Strand = Plus / Plus Query: 795 ccaacacggctacttgtgccagcttcccaagctggaagcctaattggcaagcaaggaaca 854 |||||||| || || |||||| |||| |||||||| ||||| ||||||||||| ||| || Sbjct: 258 ccaacacgacttctagtgccatcttcgcaagctggcagccttattggcaagcagggagca 317 Query: 855 accattaaatcaatacaggatgcctcaaagtgtgctctccgcattcttgagaatgtgcca 914 || |||||||||||||| ||| | ||||| | | | |||| ||| ||||||||||||| Sbjct: 318 actattaaatcaatacaagattcttcaaaatctattgtccgtattgttgagaatgtgcct 377 Query: 915 cctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgttcac 974 ||||| ||| |||||||||| |||||||| |||||||| || || |||| || ||| || Sbjct: 378 cctgttgcactaaatgatgatagagttgtggagatacaaggcgagcctcttggtgtccag 437 Query: 975 aaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgttctc 1034 |||||||||||| | || | | || ||||||| |||||||||||||| |||||||| Sbjct: 438 aaagcagtggaattaatatcgagtcacctgagaaaatttcttgttgaccgcagtgttctt 497 Query: 1035 cctttattcgaaatgcagatgaaagtgcacagtgcgcccagagagcaacctatgcctgct 1094 || || || ||| || |||||| |||| || ||| || |||||||| |||| || Sbjct: 498 ccattgtttgaagcacatatgaaaatgcatggtatgccgagggagcaaccagtgccacct 557 Query: 1095 cctcagcagtggggtcctcctccaccctggagtcatccaccaaacattcctcccagtggc 1154 || ||||| ||||| ||||||| | |||||| | || |||||||||||||| |||| Sbjct: 558 ccccagcattggggccctcctcaaacctggatccgccctccaaacattcctccaggtggt 617 Query: 1155 ccaggttatggcgggaacccacattttatgccgccaaggccacaagacagctattatcct 1214 || |||| ||| || || ||||| || ||||| |||||||| |||||||| ||||||||| Sbjct: 618 cctggttttggaggaaatccacagttcatgcctccaaggccgcaagacagttattatcct 677 Query: 1215 cctcctaatgtg 1226 |||||| ||||| Sbjct: 678 cctcctgatgtg 689 Score = 69.9 bits (35), Expect = 3e-08 Identities = 44/47 (93%) Strand = Plus / Plus Query: 1497 caagttcaaactgctcagcagctgatcaagaatttcatggccgaagc 1543 |||||||||||||| |||||||||||| ||||||||||||| ||||| Sbjct: 957 caagttcaaactgcgcagcagctgatccagaatttcatggcagaagc 1003 Score = 54.0 bits (27), Expect = 0.002 Identities = 69/83 (83%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcactggttcctccagccattgatggtttg 716 |||||||||||||||||||| || |||||||||| | ||||||| || ||||| || Sbjct: 120 gtaatgatttcagcaaaggatgaaccagatgcacctctctctccagctatggatggctta 179 Query: 717 ctcagagtacataatagaataac 739 || ||||| ||||| |||||||| Sbjct: 180 cttagagttcataaaagaataac 202 Score = 46.1 bits (23), Expect = 0.46 Identities = 38/43 (88%) Strand = Plus / Plus Query: 1357 ttcctctttcctatgctgatgctgtgattgggtctgctggtgc 1399 |||| ||| |||| |||||||||||||||||| | |||||||| Sbjct: 811 ttccccttgcctacgctgatgctgtgattggggcagctggtgc 853
>dbj|AK067707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114H09, full insert sequence Length = 1946 Score = 174 bits (88), Expect = 8e-40 Identities = 172/200 (86%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 |||||||||||| ||||| ||||| ||||| || ||| ||||| | | |||| ||||| Sbjct: 422 gaaatggcctggttggccaggagagagtgtttttcgtatactgatcccagcccagaaggt 481 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 |||||| |||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct: 482 aggtgctatcattggccgcaaaggggagtttatcaaaaagatgtgtgaggagtctaaagc 541 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaatgatttcagc 670 |||||||| || ||||||||||| || ||||| ||||||||| | |||||||||||||| Sbjct: 542 tcgcataaaaatacttgatggcccgcctggtgtaccagaaagaacagtaatgatttcagc 601 Query: 671 aaaggacgagccagatgcac 690 |||||| ||||||||||||| Sbjct: 602 aaaggatgagccagatgcac 621 Score = 141 bits (71), Expect = 1e-29 Identities = 587/758 (77%), Gaps = 12/758 (1%) Strand = Plus / Plus Query: 795 ccaacacggctacttgtgccagcttcccaagctggaagcctaattggcaagcaaggaaca 854 |||||||| || || || ||||||||||||||||| ||||| ||||| || || ||| || Sbjct: 726 ccaacacgactgctagtaccagcttcccaagctggcagccttattgggaaacagggagca 785 Query: 855 accattaaatcaatacaggatgcctcaaagtgtgctctccgcattcttgagaatgtgcca 914 ||||||||||| || || ||| | ||||||| | | || ||| |||||| | |||| Sbjct: 786 accattaaatccattcaagattcttcaaagtccattgttcgtattgttgagactttgcct 845 Query: 915 cctgtggcattaaatgatgacagagttgttgagatacagggtgaacctcatgatgttcac 974 | ||| ||| |||||||||| |||||||| |||||||| ||||| ||| || ||| || Sbjct: 846 cttgttgcactaaatgatgatagagttgtggagatacaaggtgagcctgttggtgtccag 905 Query: 975 aaagcagtggaactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgttctc 1034 |||||| ||||| ||| || | || || ||||| |||||||||||||| |||||||| Sbjct: 906 aaagcactggaatcgatagccagtcacttaagaaaatttcttgttgaccgcagtgttctt 965 Query: 1035 cctttattcgaaatgcagatgaaagtgcacagtgcgcccagagagcaacctatgcctgct 1094 ||| | || ||| ||| |||||| |||||| ||| | || || ||| | ||| | ||| Sbjct: 966 cctctttttgaagggcaaatgaaaatgcacaatgcacagagggaacaagcaatggcagct 1025 Query: 1095 cctcagcagtggggtcctcctccaccctggagtcatccaccaa---acattcctcccagt 1151 ||||||| ||||| || |||| ||| ||| | | ||| |||| || | ||||| || Sbjct: 1026 cctcagccttggggcccacctcaaccttggggccctcctccaagccacctccctcctggt 1085 Query: 1152 ggcccaggttatggcgggaacccacattttatgccgccaaggccacaagacagctattat 1211 || ||||||||||| || | ||||| || ||||| |||||||| ||||||| |||||| Sbjct: 1086 ggtccaggttatggtggacatccacagttcatgcccccaaggccgcaagacaattattat 1145 Query: 1212 cctcctcctaatgtgcaccatgtggaaaaacaaccgcactatgggatttcttcatatgga 1271 ||||| ||| |||| | | | ||||||| || || ||||| || |||||| | |||||| Sbjct: 1146 cctccccctgatgtcccctctatggaaaagcagccacactacggtatttctgcctatgga 1205 Query: 1272 cgtgatgcaaatccaactgctgctcctacctcagggaatcaacacctatcgcatgggtct 1331 || || ||| ||||||| || | || | || |||||||||| | ||| |||| | || Sbjct: 1206 cgagaagca---ccaactggtgtttctgcttctgggaatcaaccaccatcacatgtggct 1262 Query: 1332 tctcaactttcgcaaaagatgcaagttcctctttcctatgctgatgctgtgattgggtct 1391 ||||| || | || || |||||| ||||||| ||||||||||||||||||||||| | Sbjct: 1263 tctcaggttacacacaacatgcaaattcctctctcctatgctgatgctgtgattggagca 1322 Query: 1392 gctggtgccaatattagctacatccgcaagcatagtggtgcaacaataagtattcaaga- 1450 |||||||| | ||||||||| || || | ||| |||||||||||| ||| |||||| || Sbjct: 1323 gctggtgctagtattagctatattcgtaggcacagtggtgcaacagtaactattcaggaa 1382 Query: 1451 -----aggtgttcctggggagatgacggtcgagattgcaggaagtgcctcacaagttcaa 1505 ||||| |||||||||||||| || ||||| || ||||| || ||||| ||| Sbjct: 1383 agcagaggtgcacctggggagatgacagttgagataattggtagtgcatcccaagtccaa 1442 Query: 1506 actgctcagcagctgatcaagaatttcatggccgaagc 1543 ||||| ||||| || || ||||||||||||| ||||| Sbjct: 1443 actgcccagcaactagtccagaatttcatggcagaagc 1480
>emb|CT833656.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020K07, full insert sequence Length = 973 Score = 147 bits (74), Expect = 2e-31 Identities = 146/170 (85%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 ||||||||| || |||||||||||||||||||||||| |||| ||| | ||||||| || Sbjct: 468 gaaatggccaggttggcctggagaaagtgtgttccgtatacttgttccagcccaaaaagt 527 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 ||| ||| |||||||||| ||||||||||||||||| | ||||||||| || |||| ||| Sbjct: 528 gggcgctgtcattggccgaaaaggggagtttatcaagaaaatgtgtgaggagtccagagc 587 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaagagctgtaa 660 ||||||||| | |||||||| |||||||| || ||||| ||||| |||| Sbjct: 588 tcgcataaaggtgcttgatggaccaccaggggtaccagatagagcagtaa 637
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 125 bits (63), Expect = 6e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 |||||||||||| ||||| ||||| ||||| || ||| ||||| | | |||| ||||| Sbjct: 23727253 gaaatggcctggttggccaggagagagtgtttttcgtatactgatcccagcccagaaggt 23727312 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 |||||| |||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct: 23727313 aggtgctatcattggccgcaaaggggagtttatcaaaaagatgtgtgaggagtctaaagc 23727372 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaaga 653 |||||||| || ||||||||||| || ||||| ||||||||| Sbjct: 23727373 tcgcataaaaatacttgatggcccgcctggtgtaccagaaaga 23727415 Score = 83.8 bits (42), Expect = 2e-12 Identities = 84/98 (85%) Strand = Plus / Plus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 |||||| ||||||| ||||||||||||||||||||||| | |||||||| | ||||||| Sbjct: 23731707 atgcaaattcctctctcctatgctgatgctgtgattggagcagctggtgctagtattagc 23731766 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattca 1447 || || || | ||| |||||||||||| ||| |||||| Sbjct: 23731767 tatattcgtaggcacagtggtgcaacagtaactattca 23731804 Score = 61.9 bits (31), Expect = 8e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 795 ccaacacggctacttgtgccagcttcccaagctggaagcctaattggcaagcaaggaaca 854 |||||||| || || || ||||||||||||||||| ||||| ||||| || || ||| || Sbjct: 23730154 ccaacacgactgctagtaccagcttcccaagctggcagccttattgggaaacagggagca 23730213 Query: 855 accattaaatc 865 ||||||||||| Sbjct: 23730214 accattaaatc 23730224 Score = 60.0 bits (30), Expect = 3e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcac 690 |||||||||||||||||||| ||||||||||||| Sbjct: 23730016 gtaatgatttcagcaaaggatgagccagatgcac 23730049 Score = 58.0 bits (29), Expect = 1e-04 Identities = 89/109 (81%) Strand = Plus / Plus Query: 925 taaatgatgacagagttgttgagatacagggtgaacctcatgatgttcacaaagcagtgg 984 |||||||||| |||||||| |||||||| ||||| ||| || ||| || |||||| ||| Sbjct: 23731093 taaatgatgatagagttgtggagatacaaggtgagcctgttggtgtccagaaagcactgg 23731152 Query: 985 aactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgttct 1033 || ||| || | || || ||||| |||||||||||||| |||||||| Sbjct: 23731153 aatcgatagccagtcacttaagaaaatttcttgttgaccgcagtgttct 23731201 Score = 48.1 bits (24), Expect = 0.12 Identities = 63/76 (82%) Strand = Plus / Plus Query: 1150 gtggcccaggttatggcgggaacccacattttatgccgccaaggccacaagacagctatt 1209 |||| ||||||||||| || | ||||| || ||||| |||||||| ||||||| |||| Sbjct: 23731413 gtggtccaggttatggtggacatccacagttcatgcccccaaggccgcaagacaattatt 23731472 Query: 1210 atcctcctcctaatgt 1225 ||||||| ||| |||| Sbjct: 23731473 atcctccccctgatgt 23731488
>gb|AC092390.3| Oryza sativa chromosome 3 BAC OSJNBb0013K08 genomic sequence, complete sequence Length = 120116 Score = 125 bits (63), Expect = 6e-25 Identities = 138/163 (84%) Strand = Plus / Plus Query: 491 gaaatggcctgggtggcctggagaaagtgtgttccgtgtactggtttctacccaaaaggt 550 |||||||||||| ||||| ||||| ||||| || ||| ||||| | | |||| ||||| Sbjct: 66279 gaaatggcctggttggccaggagagagtgtttttcgtatactgatcccagcccagaaggt 66338 Query: 551 gggtgctctcattggccgcaaaggggagtttatcaaaagaatgtgtgatgaatccaaagc 610 |||||| |||||||||||||||||||||||||||||| |||||||| || || ||||| Sbjct: 66339 aggtgctatcattggccgcaaaggggagtttatcaaaaagatgtgtgaggagtctaaagc 66398 Query: 611 ccgcataaagattcttgatggcccaccaggtgttccagaaaga 653 |||||||| || ||||||||||| || ||||| ||||||||| Sbjct: 66399 tcgcataaaaatacttgatggcccgcctggtgtaccagaaaga 66441 Score = 83.8 bits (42), Expect = 2e-12 Identities = 84/98 (85%) Strand = Plus / Plus Query: 1350 atgcaagttcctctttcctatgctgatgctgtgattgggtctgctggtgccaatattagc 1409 |||||| ||||||| ||||||||||||||||||||||| | |||||||| | ||||||| Sbjct: 70733 atgcaaattcctctctcctatgctgatgctgtgattggagcagctggtgctagtattagc 70792 Query: 1410 tacatccgcaagcatagtggtgcaacaataagtattca 1447 || || || | ||| |||||||||||| ||| |||||| Sbjct: 70793 tatattcgtaggcacagtggtgcaacagtaactattca 70830 Score = 61.9 bits (31), Expect = 8e-06 Identities = 61/71 (85%) Strand = Plus / Plus Query: 795 ccaacacggctacttgtgccagcttcccaagctggaagcctaattggcaagcaaggaaca 854 |||||||| || || || ||||||||||||||||| ||||| ||||| || || ||| || Sbjct: 69180 ccaacacgactgctagtaccagcttcccaagctggcagccttattgggaaacagggagca 69239 Query: 855 accattaaatc 865 ||||||||||| Sbjct: 69240 accattaaatc 69250 Score = 60.0 bits (30), Expect = 3e-05 Identities = 33/34 (97%) Strand = Plus / Plus Query: 657 gtaatgatttcagcaaaggacgagccagatgcac 690 |||||||||||||||||||| ||||||||||||| Sbjct: 69042 gtaatgatttcagcaaaggatgagccagatgcac 69075 Score = 58.0 bits (29), Expect = 1e-04 Identities = 89/109 (81%) Strand = Plus / Plus Query: 925 taaatgatgacagagttgttgagatacagggtgaacctcatgatgttcacaaagcagtgg 984 |||||||||| |||||||| |||||||| ||||| ||| || ||| || |||||| ||| Sbjct: 70119 taaatgatgatagagttgtggagatacaaggtgagcctgttggtgtccagaaagcactgg 70178 Query: 985 aactgattgcaaaccatttgagaaagtttcttgttgaccgtagtgttct 1033 || ||| || | || || ||||| |||||||||||||| |||||||| Sbjct: 70179 aatcgatagccagtcacttaagaaaatttcttgttgaccgcagtgttct 70227 Score = 48.1 bits (24), Expect = 0.12 Identities = 63/76 (82%) Strand = Plus / Plus Query: 1150 gtggcccaggttatggcgggaacccacattttatgccgccaaggccacaagacagctatt 1209 |||| ||||||||||| || | ||||| || ||||| |||||||| ||||||| |||| Sbjct: 70439 gtggtccaggttatggtggacatccacagttcatgcccccaaggccgcaagacaattatt 70498 Query: 1210 atcctcctcctaatgt 1225 ||||||| ||| |||| Sbjct: 70499 atcctccccctgatgt 70514
>emb|CR533429.7| Zebrafish DNA sequence from clone CH211-219A4 in linkage group 9, complete sequence Length = 171970 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Minus Query: 1222 atgtgcaccatgtggaaaaacaaccgca 1249 ||||| |||||||||||||||||||||| Sbjct: 97714 atgtggaccatgtggaaaaacaaccgca 97687
>gb|BC078229.1| Danio rerio FAM62A protein, mRNA (cDNA clone IMAGE:7153182), partial cds Length = 1675 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1222 atgtgcaccatgtggaaaaacaaccgca 1249 ||||| |||||||||||||||||||||| Sbjct: 450 atgtggaccatgtggaaaaacaaccgca 477
>gb|BC095562.1| Danio rerio cDNA clone IMAGE:7229503 Length = 1110 Score = 48.1 bits (24), Expect = 0.12 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1222 atgtgcaccatgtggaaaaacaaccgca 1249 ||||| |||||||||||||||||||||| Sbjct: 420 atgtggaccatgtggaaaaacaaccgca 447
>gb|AC192553.2| Gallus gallus BAC clone CH261-128A6 from chromosome z, complete sequence Length = 184551 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 929 tgatgacagagttgttgagatacagg 954 |||||||| ||||||||||||||||| Sbjct: 129508 tgatgacacagttgttgagatacagg 129533
>gb|AC186853.2| Gallus gallus BAC clone CH261-17M18 from chromosome z, complete sequence Length = 194215 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 929 tgatgacagagttgttgagatacagg 954 |||||||| ||||||||||||||||| Sbjct: 23967 tgatgacacagttgttgagatacagg 23992
>emb|AL391845.49| Human DNA sequence from clone RP11-547D24 on chromosome 1 Contains the 3' end of a novel gene (LOC339459), the GABRD gene for gamma-aminobutyric acid (GABA) A receptor delta, two novel genes the 5' end of the PRKCZ gene for protein kinase C, zeta and seven CpG islands, complete sequence Length = 132884 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 736 taacagatggtttggacagtgaaacc 761 ||||||||||||||||||| |||||| Sbjct: 118766 taacagatggtttggacagagaaacc 118741
>gb|AC154239.3| Mus musculus BAC clone RP24-164C12 from chromosome 14, complete sequence Length = 161815 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 678 gagccagatgcactggttcctc 699 |||||||||||||||||||||| Sbjct: 107727 gagccagatgcactggttcctc 107748
>ref|XM_420320.2| PREDICTED: Gallus gallus similar to alpha-5 type IV collagen (LOC422348), mRNA Length = 7695 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 629 tggcccaccaggtgttccagaaaga 653 |||||||||||||||||||| |||| Sbjct: 3708 tggcccaccaggtgttccaggaaga 3732
>ref|NM_001060855.1| Oryza sativa (japonica cultivar-group) Os04g0685600 (Os04g0685600) mRNA, complete cds Length = 2477 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1103 gtggggtcctcctccaccctg 1123 ||||||||||||||||||||| Sbjct: 90 gtggggtcctcctccaccctg 110
>ref|XM_001162059.1| PREDICTED: Pan troglodytes hypothetical protein LOC744730 (LOC744730), mRNA Length = 381 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gtgactgtgaaagatgaggat 377 ||||||||||||||||||||| Sbjct: 102 gtgactgtgaaagatgaggat 122
>emb|AL732347.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0723C07, complete sequence Length = 112897 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1103 gtggggtcctcctccaccctg 1123 ||||||||||||||||||||| Sbjct: 17856 gtggggtcctcctccaccctg 17836
>gb|AC161244.2| Mus musculus BAC clone RP24-393O16 from chromosome 13, complete sequence Length = 201429 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 647 agaaagagctgtaatgatttc 667 ||||||||||||||||||||| Sbjct: 60851 agaaagagctgtaatgatttc 60871
>gb|AC121916.3| Mus musculus BAC clone RP24-192K21 from chromosome 13, complete sequence Length = 157970 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 647 agaaagagctgtaatgatttc 667 ||||||||||||||||||||| Sbjct: 4100 agaaagagctgtaatgatttc 4080
>gb|AC158132.6| Mus musculus chromosome 1, clone RP23-11K8, complete sequence Length = 231218 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1211 tcctcctcctaatgtgcacca 1231 ||||||||||||||||||||| Sbjct: 103864 tcctcctcctaatgtgcacca 103884
>gb|BC021185.1| Homo sapiens cDNA clone IMAGE:4827386 Length = 390 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 357 gtgactgtgaaagatgaggat 377 ||||||||||||||||||||| Sbjct: 102 gtgactgtgaaagatgaggat 122
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1757 gttttgttgttcggcctgccg 1777 ||||||||||||||||||||| Sbjct: 1723453 gttttgttgttcggcctgccg 1723433
>gb|AC010760.8| Homo sapiens chromosome , clone RP11-2F9, complete sequence Length = 179139 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 439 atggtggggaagctgaggcag 459 ||||||||||||||||||||| Sbjct: 9347 atggtggggaagctgaggcag 9367
>gb|AC006432.15| Homo sapiens 12p13 PAC RPCI11-726G1 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 180685 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 cgaaatggcctgggtggcctg 510 ||||||||||||||||||||| Sbjct: 174135 cgaaatggcctgggtggcctg 174115
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1103 gtggggtcctcctccaccctg 1123 ||||||||||||||||||||| Sbjct: 35063178 gtggggtcctcctccaccctg 35063158
>ref|NM_001006154.1| Gallus gallus similar to chromosome 5 open reading frame 15; keratinocytes associated transmembrane protein 2; HTGN29 protein (LOC416321), mRNA emb|AJ719985.1| Gallus gallus mRNA for hypothetical protein, clone 9b14 Length = 2190 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 acgaggaacccaaaggcacaa 318 ||||||||||||||||||||| Sbjct: 2062 acgaggaacccaaaggcacaa 2082
>gb|AC092821.11| Homo sapiens 12 BAC RP11-525E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121181 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 cgaaatggcctgggtggcctg 510 ||||||||||||||||||||| Sbjct: 19518 cgaaatggcctgggtggcctg 19538
>gb|AC134979.5| Homo sapiens chromosome 15, clone RP11-960P22, complete sequence Length = 41484 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 atggtggggaagctgaggcag 459 ||||||||||||||||||||| Sbjct: 8777 atggtggggaagctgaggcag 8757
>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162572 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 490 cgaaatggcctgggtggcctg 510 ||||||||||||||||||||| Sbjct: 86058 cgaaatggcctgggtggcctg 86078
>gb|AC135068.5| Homo sapiens chromosome 15, clone RP11-294C11, complete sequence Length = 178845 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 atggtggggaagctgaggcag 459 ||||||||||||||||||||| Sbjct: 164492 atggtggggaagctgaggcag 164472
>gb|AC134981.6| Homo sapiens chromosome 15, clone RP11-361C13, complete sequence Length = 194789 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 atggtggggaagctgaggcag 459 ||||||||||||||||||||| Sbjct: 145496 atggtggggaagctgaggcag 145476
>dbj|AK067506.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108D21, full insert sequence Length = 2478 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1103 gtggggtcctcctccaccctg 1123 ||||||||||||||||||||| Sbjct: 91 gtggggtcctcctccaccctg 111
>gb|AC008013.8| Homo sapiens 12 BAC RP11-551L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168986 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 490 cgaaatggcctgggtggcctg 510 ||||||||||||||||||||| Sbjct: 131457 cgaaatggcctgggtggcctg 131437
>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09, complete sequence Length = 145391 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1103 gtggggtcctcctccaccctg 1123 ||||||||||||||||||||| Sbjct: 122225 gtggggtcctcctccaccctg 122205
>gb|AC025884.28| Homo sapiens chromosome 15, clone RP11-603B24, complete sequence Length = 165227 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 439 atggtggggaagctgaggcag 459 ||||||||||||||||||||| Sbjct: 28790 atggtggggaagctgaggcag 28770 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 331,708,457 Number of extensions: 17358719 Number of successful extensions: 371261 Number of sequences better than 10.0: 41 Number of HSP's gapped: 371244 Number of HSP's successfully gapped: 89 Length of query: 1892 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1869 Effective length of database: 18,503,978,556 Effective search space: 34583935921164 Effective search space used: 34583935921164 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
