ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf56a17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001051414.1| Oryza sativa (japonica cultivar-group) Os01g0862000 (Os01g0862000) mRNA, complete cds Length = 1292 Score = 474 bits (239), Expect = e-130 Identities = 416/475 (87%) Strand = Plus / Plus Query: 1265 cagaacagctctgggtgcttgattctgtccccggagaagtaaaaatagataacagtgatg 1324 |||||||||| ||||||||||||||||| || || ||||| ||| |||||||||||||| Sbjct: 558 cagaacagctttgggtgcttgattctgttcctggtcaagtagaaacagataacagtgatg 617 Query: 1325 gcgaagttgaacgggttttgcaaacactagcaagtcttccttcatcgcttccatcgcgca 1384 | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 618 gtgaagttgaacgggttttgcaaacgctggcaagtcttccttcatcgcttccatcgcgca 677 Query: 1385 agtgggttgtggaccacatggtcagcctgggattctccaagtcactttcagactggattg 1444 |||||||||| ||||||||| ||| | ||||||| || ||||| |||||||| ||||||| Sbjct: 678 agtgggttgtcgaccacatgatcaacttgggattttcaaagtctctttcagaatggattg 737 Query: 1445 gcagcaacttgaagaaggacaatgaacatgtgacctgggcttttgatcttcaggctgcca 1504 | |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 738 ggagcaacttaaaaaaggacaatgaacatgtgacatgggcgtttgatcttcaggctgcca 797 Query: 1505 cagacatgtttaattcttacagagatagaagctactgggcactgctggagaacccaccaa 1564 ||| |||||||||||||| ||||| |||||||| ||| ||||||| ||||||||||||| Sbjct: 798 tagatatgtttaattcttatagagaaagaagctattggacactgcttgagaacccaccaa 857 Query: 1565 agggtttggagatctcaatagtacaggcagagctcagtgatagatggcaccctgatgatg 1624 |||||||||| ||| | ||||| || |||||||||||||||||||||| ||||||||| Sbjct: 858 agggtttggacatcgccatagtgcaagcagagctcagtgatagatggctttctgatgatg 917 Query: 1625 tccagaggctaaaagcactatcaaggagaggcagaaaacctgacgtggggaaagtgtcac 1684 | |||||||||||||| | || ||||||| || || ||||| | || ||||| || | Sbjct: 918 ttcagaggctaaaagcgttgtctaggagagagagcaagcctgatgctggtaaagtttctc 977 Query: 1685 tccacgtcctccccaactccggccattgggttcacgtggacaaccacaaggggct 1739 | ||||| ||||||||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 978 ttcacgttctccccaactctggccattgggttcatgtggacaatcccaaggggct 1032 Score = 242 bits (122), Expect = 4e-60 Identities = 152/162 (93%) Strand = Plus / Plus Query: 146 accagaccgaaaccctcgccttccacgagatccagctctccccggagaagtcgcccaccg 205 ||||||||||||||||||| ||| ||||||||||||| ||||| |||||| || |||||| Sbjct: 160 accagaccgaaaccctcgctttcgacgagatccagctgtcccccgagaagccgtccaccg 219 Query: 206 ccaccgccttcgtcctccacggcctcctgggctccggccgcaactggcgcaccttctccc 265 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 220 ccaccgccttcgtcctccacggcctcctcggctccggccgcaactggcgctccttctccc 279 Query: 266 gcaccctcgcctcccagctccgcgaccgctccccttccgacg 307 || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 280 gcgccctcgcctccgagctccgcgaccgctccccttccgacg 321 Score = 222 bits (112), Expect = 4e-54 Identities = 208/240 (86%) Strand = Plus / Plus Query: 545 gagtggaagatggttcttgtggatttgaggaaccatgggagctcagccaggatcaaaggg 604 ||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||| || Sbjct: 321 gagtggagaatggttctcgtggatttgaggaaccacgggagatcagcggggatcaagggc 380 Query: 605 ctgggcccaccccatgatatgtcgagtgcggccagggatctcgctgatttagtgaaggcc 664 ||| | || || ||||| ||||| | |||||||||||| ||||| ||||| ||||||||| Sbjct: 381 ctgaggccgccgcatgacatgtcaactgcggccagggacctcgccgatttggtgaaggcc 440 Query: 665 cggggctggacatggccggatgtcgtcgtgggtcactccatgggtggaaaggtcgcactg 724 || |||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 441 cgtggctgggcatggccggatgttgtcgtgggtcactccatgggtgggaaggtggcactg 500 Query: 725 gattttgcggagagttgctcccgtggtgattacggagaatctgctgctcttcccaaacag 784 |||||||| ||||| || ||||| ||||||||||| || || |||| ||||||||||||| Sbjct: 501 gattttgcagagagctgttcccgcggtgattacggggagtccgctgatcttcccaaacag 560 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 16 cgatcggccatggcggcgtctctccg 41 |||| ||||||||||||||||||||| Sbjct: 30 cgattggccatggcggcgtctctccg 55
>dbj|AK072680.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135F13, full insert sequence Length = 1293 Score = 474 bits (239), Expect = e-130 Identities = 416/475 (87%) Strand = Plus / Plus Query: 1265 cagaacagctctgggtgcttgattctgtccccggagaagtaaaaatagataacagtgatg 1324 |||||||||| ||||||||||||||||| || || ||||| ||| |||||||||||||| Sbjct: 559 cagaacagctttgggtgcttgattctgttcctggtcaagtagaaacagataacagtgatg 618 Query: 1325 gcgaagttgaacgggttttgcaaacactagcaagtcttccttcatcgcttccatcgcgca 1384 | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 619 gtgaagttgaacgggttttgcaaacgctggcaagtcttccttcatcgcttccatcgcgca 678 Query: 1385 agtgggttgtggaccacatggtcagcctgggattctccaagtcactttcagactggattg 1444 |||||||||| ||||||||| ||| | ||||||| || ||||| |||||||| ||||||| Sbjct: 679 agtgggttgtcgaccacatgatcaacttgggattttcaaagtctctttcagaatggattg 738 Query: 1445 gcagcaacttgaagaaggacaatgaacatgtgacctgggcttttgatcttcaggctgcca 1504 | |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 739 ggagcaacttaaaaaaggacaatgaacatgtgacatgggcgtttgatcttcaggctgcca 798 Query: 1505 cagacatgtttaattcttacagagatagaagctactgggcactgctggagaacccaccaa 1564 ||| |||||||||||||| ||||| |||||||| ||| ||||||| ||||||||||||| Sbjct: 799 tagatatgtttaattcttatagagaaagaagctattggacactgcttgagaacccaccaa 858 Query: 1565 agggtttggagatctcaatagtacaggcagagctcagtgatagatggcaccctgatgatg 1624 |||||||||| ||| | ||||| || |||||||||||||||||||||| ||||||||| Sbjct: 859 agggtttggacatcgccatagtgcaagcagagctcagtgatagatggctttctgatgatg 918 Query: 1625 tccagaggctaaaagcactatcaaggagaggcagaaaacctgacgtggggaaagtgtcac 1684 | |||||||||||||| | || ||||||| || || ||||| | || ||||| || | Sbjct: 919 ttcagaggctaaaagcgttgtctaggagagagagcaagcctgatgctggtaaagtttctc 978 Query: 1685 tccacgtcctccccaactccggccattgggttcacgtggacaaccacaaggggct 1739 | ||||| ||||||||||| |||||||||||||| |||||||| | ||||||||| Sbjct: 979 ttcacgttctccccaactctggccattgggttcatgtggacaatcccaaggggct 1033 Score = 242 bits (122), Expect = 4e-60 Identities = 152/162 (93%) Strand = Plus / Plus Query: 146 accagaccgaaaccctcgccttccacgagatccagctctccccggagaagtcgcccaccg 205 ||||||||||||||||||| ||| ||||||||||||| ||||| |||||| || |||||| Sbjct: 161 accagaccgaaaccctcgctttcgacgagatccagctgtcccccgagaagccgtccaccg 220 Query: 206 ccaccgccttcgtcctccacggcctcctgggctccggccgcaactggcgcaccttctccc 265 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 221 ccaccgccttcgtcctccacggcctcctcggctccggccgcaactggcgctccttctccc 280 Query: 266 gcaccctcgcctcccagctccgcgaccgctccccttccgacg 307 || ||||||||||| ||||||||||||||||||||||||||| Sbjct: 281 gcgccctcgcctccgagctccgcgaccgctccccttccgacg 322 Score = 222 bits (112), Expect = 4e-54 Identities = 208/240 (86%) Strand = Plus / Plus Query: 545 gagtggaagatggttcttgtggatttgaggaaccatgggagctcagccaggatcaaaggg 604 ||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||| || Sbjct: 322 gagtggagaatggttctcgtggatttgaggaaccacgggagatcagcggggatcaagggc 381 Query: 605 ctgggcccaccccatgatatgtcgagtgcggccagggatctcgctgatttagtgaaggcc 664 ||| | || || ||||| ||||| | |||||||||||| ||||| ||||| ||||||||| Sbjct: 382 ctgaggccgccgcatgacatgtcaactgcggccagggacctcgccgatttggtgaaggcc 441 Query: 665 cggggctggacatggccggatgtcgtcgtgggtcactccatgggtggaaaggtcgcactg 724 || |||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 442 cgtggctgggcatggccggatgttgtcgtgggtcactccatgggtgggaaggtggcactg 501 Query: 725 gattttgcggagagttgctcccgtggtgattacggagaatctgctgctcttcccaaacag 784 |||||||| ||||| || ||||| ||||||||||| || || |||| ||||||||||||| Sbjct: 502 gattttgcagagagctgttcccgcggtgattacggggagtccgctgatcttcccaaacag 561 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 16 cgatcggccatggcggcgtctctccg 41 |||| ||||||||||||||||||||| Sbjct: 31 cgattggccatggcggcgtctctccg 56
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 248 bits (125), Expect = 6e-62 Identities = 155/165 (93%) Strand = Plus / Minus Query: 146 accagaccgaaaccctcgccttccacgagatccagctctccccggagaagtcgcccaccg 205 ||||||||||||||||||| ||| ||||||||||||| ||||| |||||| || |||||| Sbjct: 37307776 accagaccgaaaccctcgctttcgacgagatccagctgtcccccgagaagccgtccaccg 37307717 Query: 206 ccaccgccttcgtcctccacggcctcctgggctccggccgcaactggcgcaccttctccc 265 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 37307716 ccaccgccttcgtcctccacggcctcctcggctccggccgcaactggcgctccttctccc 37307657 Query: 266 gcaccctcgcctcccagctccgcgaccgctccccttccgacggta 310 || ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 37307656 gcgccctcgcctccgagctccgcgaccgctccccttccgacggta 37307612 Score = 242 bits (122), Expect = 4e-60 Identities = 218/250 (87%) Strand = Plus / Minus Query: 537 tgcctgtagagtggaagatggttcttgtggatttgaggaaccatgggagctcagccagga 596 ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 37307489 tgcctgtagagtggagaatggttctcgtggatttgaggaaccacgggagatcagcgggga 37307430 Query: 597 tcaaagggctgggcccaccccatgatatgtcgagtgcggccagggatctcgctgatttag 656 |||| || ||| | || || ||||| ||||| | |||||||||||| ||||| ||||| | Sbjct: 37307429 tcaagggcctgaggccgccgcatgacatgtcaactgcggccagggacctcgccgatttgg 37307370 Query: 657 tgaaggcccggggctggacatggccggatgtcgtcgtgggtcactccatgggtggaaagg 716 |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 37307369 tgaaggcccgtggctgggcatggccggatgttgtcgtgggtcactccatgggtgggaagg 37307310 Query: 717 tcgcactggattttgcggagagttgctcccgtggtgattacggagaatctgctgctcttc 776 | |||||||||||||| ||||| || ||||| ||||||||||| || || |||| ||||| Sbjct: 37307309 tggcactggattttgcagagagctgttcccgcggtgattacggggagtccgctgatcttc 37307250 Query: 777 ccaaacaggt 786 |||||||||| Sbjct: 37307249 ccaaacaggt 37307240 Score = 178 bits (90), Expect = 5e-41 Identities = 120/130 (92%) Strand = Plus / Minus Query: 1258 tttgatgcagaacagctctgggtgcttgattctgtccccggagaagtaaaaatagataac 1317 ||||||||||||||||| ||||||||||||||||| || || ||||| ||| ||||||| Sbjct: 37305750 tttgatgcagaacagctttgggtgcttgattctgttcctggtcaagtagaaacagataac 37305691 Query: 1318 agtgatggcgaagttgaacgggttttgcaaacactagcaagtcttccttcatcgcttcca 1377 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 37305690 agtgatggtgaagttgaacgggttttgcaaacgctggcaagtcttccttcatcgcttcca 37305631 Query: 1378 tcgcgcaagt 1387 |||||||||| Sbjct: 37305630 tcgcgcaagt 37305621 Score = 170 bits (86), Expect = 1e-38 Identities = 185/218 (84%) Strand = Plus / Minus Query: 1522 tacagagatagaagctactgggcactgctggagaacccaccaaagggtttggagatctca 1581 |||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| ||| | Sbjct: 37304578 tacagagaaagaagctattggacactgcttgagaacccaccaaagggtttggacatcgcc 37304519 Query: 1582 atagtacaggcagagctcagtgatagatggcaccctgatgatgtccagaggctaaaagca 1641 ||||| || |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 37304518 atagtgcaagcagagctcagtgatagatggctttctgatgatgttcagaggctaaaagcg 37304459 Query: 1642 ctatcaaggagaggcagaaaacctgacgtggggaaagtgtcactccacgtcctccccaac 1701 | || ||||||| || || ||||| | || ||||| || || ||||| ||||||||| Sbjct: 37304458 ttgtctaggagagagagcaagcctgatgctggtaaagtttctcttcacgttctccccaac 37304399 Query: 1702 tccggccattgggttcacgtggacaaccacaaggggct 1739 || |||||||||||||| |||||||| | ||||||||| Sbjct: 37304398 tctggccattgggttcatgtggacaatcccaaggggct 37304361 Score = 155 bits (78), Expect = 7e-34 Identities = 123/138 (89%) Strand = Plus / Minus Query: 1386 gtgggttgtggaccacatggtcagcctgggattctccaagtcactttcagactggattgg 1445 ||||||||| ||||||||| ||| | ||||||| || ||||| |||||||| |||||||| Sbjct: 37304905 gtgggttgtcgaccacatgatcaacttgggattttcaaagtctctttcagaatggattgg 37304846 Query: 1446 cagcaacttgaagaaggacaatgaacatgtgacctgggcttttgatcttcaggctgccac 1505 |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 37304845 gagcaacttaaaaaaggacaatgaacatgtgacatgggcgtttgatcttcaggctgccat 37304786 Query: 1506 agacatgtttaattctta 1523 ||| |||||||||||||| Sbjct: 37304785 agatatgtttaattctta 37304768 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 cgatcggccatggcggcgtctctccg 41 |||| ||||||||||||||||||||| Sbjct: 37307906 cgattggccatggcggcgtctctccg 37307881
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423B08 Length = 151490 Score = 248 bits (125), Expect = 6e-62 Identities = 155/165 (93%) Strand = Plus / Minus Query: 146 accagaccgaaaccctcgccttccacgagatccagctctccccggagaagtcgcccaccg 205 ||||||||||||||||||| ||| ||||||||||||| ||||| |||||| || |||||| Sbjct: 19810 accagaccgaaaccctcgctttcgacgagatccagctgtcccccgagaagccgtccaccg 19751 Query: 206 ccaccgccttcgtcctccacggcctcctgggctccggccgcaactggcgcaccttctccc 265 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 19750 ccaccgccttcgtcctccacggcctcctcggctccggccgcaactggcgctccttctccc 19691 Query: 266 gcaccctcgcctcccagctccgcgaccgctccccttccgacggta 310 || ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 19690 gcgccctcgcctccgagctccgcgaccgctccccttccgacggta 19646 Score = 242 bits (122), Expect = 4e-60 Identities = 218/250 (87%) Strand = Plus / Minus Query: 537 tgcctgtagagtggaagatggttcttgtggatttgaggaaccatgggagctcagccagga 596 ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 19523 tgcctgtagagtggagaatggttctcgtggatttgaggaaccacgggagatcagcgggga 19464 Query: 597 tcaaagggctgggcccaccccatgatatgtcgagtgcggccagggatctcgctgatttag 656 |||| || ||| | || || ||||| ||||| | |||||||||||| ||||| ||||| | Sbjct: 19463 tcaagggcctgaggccgccgcatgacatgtcaactgcggccagggacctcgccgatttgg 19404 Query: 657 tgaaggcccggggctggacatggccggatgtcgtcgtgggtcactccatgggtggaaagg 716 |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 19403 tgaaggcccgtggctgggcatggccggatgttgtcgtgggtcactccatgggtgggaagg 19344 Query: 717 tcgcactggattttgcggagagttgctcccgtggtgattacggagaatctgctgctcttc 776 | |||||||||||||| ||||| || ||||| ||||||||||| || || |||| ||||| Sbjct: 19343 tggcactggattttgcagagagctgttcccgcggtgattacggggagtccgctgatcttc 19284 Query: 777 ccaaacaggt 786 |||||||||| Sbjct: 19283 ccaaacaggt 19274 Score = 178 bits (90), Expect = 5e-41 Identities = 120/130 (92%) Strand = Plus / Minus Query: 1258 tttgatgcagaacagctctgggtgcttgattctgtccccggagaagtaaaaatagataac 1317 ||||||||||||||||| ||||||||||||||||| || || ||||| ||| ||||||| Sbjct: 17784 tttgatgcagaacagctttgggtgcttgattctgttcctggtcaagtagaaacagataac 17725 Query: 1318 agtgatggcgaagttgaacgggttttgcaaacactagcaagtcttccttcatcgcttcca 1377 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 17724 agtgatggtgaagttgaacgggttttgcaaacgctggcaagtcttccttcatcgcttcca 17665 Query: 1378 tcgcgcaagt 1387 |||||||||| Sbjct: 17664 tcgcgcaagt 17655 Score = 170 bits (86), Expect = 1e-38 Identities = 185/218 (84%) Strand = Plus / Minus Query: 1522 tacagagatagaagctactgggcactgctggagaacccaccaaagggtttggagatctca 1581 |||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| ||| | Sbjct: 16612 tacagagaaagaagctattggacactgcttgagaacccaccaaagggtttggacatcgcc 16553 Query: 1582 atagtacaggcagagctcagtgatagatggcaccctgatgatgtccagaggctaaaagca 1641 ||||| || |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 16552 atagtgcaagcagagctcagtgatagatggctttctgatgatgttcagaggctaaaagcg 16493 Query: 1642 ctatcaaggagaggcagaaaacctgacgtggggaaagtgtcactccacgtcctccccaac 1701 | || ||||||| || || ||||| | || ||||| || || ||||| ||||||||| Sbjct: 16492 ttgtctaggagagagagcaagcctgatgctggtaaagtttctcttcacgttctccccaac 16433 Query: 1702 tccggccattgggttcacgtggacaaccacaaggggct 1739 || |||||||||||||| |||||||| | ||||||||| Sbjct: 16432 tctggccattgggttcatgtggacaatcccaaggggct 16395 Score = 155 bits (78), Expect = 7e-34 Identities = 123/138 (89%) Strand = Plus / Minus Query: 1386 gtgggttgtggaccacatggtcagcctgggattctccaagtcactttcagactggattgg 1445 ||||||||| ||||||||| ||| | ||||||| || ||||| |||||||| |||||||| Sbjct: 16939 gtgggttgtcgaccacatgatcaacttgggattttcaaagtctctttcagaatggattgg 16880 Query: 1446 cagcaacttgaagaaggacaatgaacatgtgacctgggcttttgatcttcaggctgccac 1505 |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 16879 gagcaacttaaaaaaggacaatgaacatgtgacatgggcgtttgatcttcaggctgccat 16820 Query: 1506 agacatgtttaattctta 1523 ||| |||||||||||||| Sbjct: 16819 agatatgtttaattctta 16802 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 cgatcggccatggcggcgtctctccg 41 |||| ||||||||||||||||||||| Sbjct: 19940 cgattggccatggcggcgtctctccg 19915
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0679C12 Length = 153666 Score = 248 bits (125), Expect = 6e-62 Identities = 155/165 (93%) Strand = Plus / Minus Query: 146 accagaccgaaaccctcgccttccacgagatccagctctccccggagaagtcgcccaccg 205 ||||||||||||||||||| ||| ||||||||||||| ||||| |||||| || |||||| Sbjct: 144765 accagaccgaaaccctcgctttcgacgagatccagctgtcccccgagaagccgtccaccg 144706 Query: 206 ccaccgccttcgtcctccacggcctcctgggctccggccgcaactggcgcaccttctccc 265 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 144705 ccaccgccttcgtcctccacggcctcctcggctccggccgcaactggcgctccttctccc 144646 Query: 266 gcaccctcgcctcccagctccgcgaccgctccccttccgacggta 310 || ||||||||||| |||||||||||||||||||||||||||||| Sbjct: 144645 gcgccctcgcctccgagctccgcgaccgctccccttccgacggta 144601 Score = 242 bits (122), Expect = 4e-60 Identities = 218/250 (87%) Strand = Plus / Minus Query: 537 tgcctgtagagtggaagatggttcttgtggatttgaggaaccatgggagctcagccagga 596 ||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| Sbjct: 144478 tgcctgtagagtggagaatggttctcgtggatttgaggaaccacgggagatcagcgggga 144419 Query: 597 tcaaagggctgggcccaccccatgatatgtcgagtgcggccagggatctcgctgatttag 656 |||| || ||| | || || ||||| ||||| | |||||||||||| ||||| ||||| | Sbjct: 144418 tcaagggcctgaggccgccgcatgacatgtcaactgcggccagggacctcgccgatttgg 144359 Query: 657 tgaaggcccggggctggacatggccggatgtcgtcgtgggtcactccatgggtggaaagg 716 |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||| Sbjct: 144358 tgaaggcccgtggctgggcatggccggatgttgtcgtgggtcactccatgggtgggaagg 144299 Query: 717 tcgcactggattttgcggagagttgctcccgtggtgattacggagaatctgctgctcttc 776 | |||||||||||||| ||||| || ||||| ||||||||||| || || |||| ||||| Sbjct: 144298 tggcactggattttgcagagagctgttcccgcggtgattacggggagtccgctgatcttc 144239 Query: 777 ccaaacaggt 786 |||||||||| Sbjct: 144238 ccaaacaggt 144229 Score = 178 bits (90), Expect = 5e-41 Identities = 120/130 (92%) Strand = Plus / Minus Query: 1258 tttgatgcagaacagctctgggtgcttgattctgtccccggagaagtaaaaatagataac 1317 ||||||||||||||||| ||||||||||||||||| || || ||||| ||| ||||||| Sbjct: 142739 tttgatgcagaacagctttgggtgcttgattctgttcctggtcaagtagaaacagataac 142680 Query: 1318 agtgatggcgaagttgaacgggttttgcaaacactagcaagtcttccttcatcgcttcca 1377 |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 142679 agtgatggtgaagttgaacgggttttgcaaacgctggcaagtcttccttcatcgcttcca 142620 Query: 1378 tcgcgcaagt 1387 |||||||||| Sbjct: 142619 tcgcgcaagt 142610 Score = 170 bits (86), Expect = 1e-38 Identities = 185/218 (84%) Strand = Plus / Minus Query: 1522 tacagagatagaagctactgggcactgctggagaacccaccaaagggtttggagatctca 1581 |||||||| |||||||| ||| ||||||| ||||||||||||||||||||||| ||| | Sbjct: 141567 tacagagaaagaagctattggacactgcttgagaacccaccaaagggtttggacatcgcc 141508 Query: 1582 atagtacaggcagagctcagtgatagatggcaccctgatgatgtccagaggctaaaagca 1641 ||||| || |||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct: 141507 atagtgcaagcagagctcagtgatagatggctttctgatgatgttcagaggctaaaagcg 141448 Query: 1642 ctatcaaggagaggcagaaaacctgacgtggggaaagtgtcactccacgtcctccccaac 1701 | || ||||||| || || ||||| | || ||||| || || ||||| ||||||||| Sbjct: 141447 ttgtctaggagagagagcaagcctgatgctggtaaagtttctcttcacgttctccccaac 141388 Query: 1702 tccggccattgggttcacgtggacaaccacaaggggct 1739 || |||||||||||||| |||||||| | ||||||||| Sbjct: 141387 tctggccattgggttcatgtggacaatcccaaggggct 141350 Score = 155 bits (78), Expect = 7e-34 Identities = 123/138 (89%) Strand = Plus / Minus Query: 1386 gtgggttgtggaccacatggtcagcctgggattctccaagtcactttcagactggattgg 1445 ||||||||| ||||||||| ||| | ||||||| || ||||| |||||||| |||||||| Sbjct: 141894 gtgggttgtcgaccacatgatcaacttgggattttcaaagtctctttcagaatggattgg 141835 Query: 1446 cagcaacttgaagaaggacaatgaacatgtgacctgggcttttgatcttcaggctgccac 1505 |||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 141834 gagcaacttaaaaaaggacaatgaacatgtgacatgggcgtttgatcttcaggctgccat 141775 Query: 1506 agacatgtttaattctta 1523 ||| |||||||||||||| Sbjct: 141774 agatatgtttaattctta 141757 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Minus Query: 16 cgatcggccatggcggcgtctctccg 41 |||| ||||||||||||||||||||| Sbjct: 144895 cgattggccatggcggcgtctctccg 144870
>ref|XM_674856.1| Plasmodium berghei strain ANKA DNA mismatch repair protein Msh2p (PB000623.01.0) partial mRNA Length = 2559 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 340 attaaatataaatacgtatatatc 363 |||||||||||||||||||||||| Sbjct: 501 attaaatataaatacgtatatatc 524
>ref|XM_723579.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01096) partial mRNA Length = 2562 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 340 attaaatataaatacgtatatatc 363 |||||||||||||||||||||||| Sbjct: 501 attaaatataaatacgtatatatc 524
>ref|XM_731979.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301160.00.0) partial mRNA Length = 924 Score = 48.1 bits (24), Expect = 0.12 Identities = 24/24 (100%) Strand = Plus / Plus Query: 340 attaaatataaatacgtatatatc 363 |||||||||||||||||||||||| Sbjct: 201 attaaatataaatacgtatatatc 224
>dbj|AP000368.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6B6 Length = 37511 Score = 46.1 bits (23), Expect = 0.46 Identities = 23/23 (100%) Strand = Plus / Plus Query: 342 taaatataaatacgtatatatct 364 ||||||||||||||||||||||| Sbjct: 3112 taaatataaatacgtatatatct 3134
>emb|AL805938.4| Mouse DNA sequence from clone RP23-248L9 on chromosome X, complete sequence Length = 81921 Score = 46.1 bits (23), Expect = 0.46 Identities = 23/23 (100%) Strand = Plus / Plus Query: 356 tatatatctcttaacattttagc 378 ||||||||||||||||||||||| Sbjct: 58395 tatatatctcttaacattttagc 58417
>gb|AC123052.4| Mus musculus chromosome 13 clone RP24-373D10, complete sequence Length = 175595 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 aatattttggtgtgtgtgtgcc 540 |||||||||||||||||||||| Sbjct: 151675 aatattttggtgtgtgtgtgcc 151696
>gb|AC157942.7| Mus musculus BAC clone RP24-118E2 from chromosome 13, complete sequence Length = 173717 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 519 aatattttggtgtgtgtgtgcc 540 |||||||||||||||||||||| Sbjct: 78275 aatattttggtgtgtgtgtgcc 78296
>gb|AC010310.5| Homo sapiens chromosome 5 clone CTB-55B8, complete sequence Length = 243558 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1804 actccagccttgtgacagtgca 1825 |||||||||||||||||||||| Sbjct: 104779 actccagccttgtgacagtgca 104758
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 200 ccaccgccaccgccttcgtcctccac 225 |||||||||||||||||| ||||||| Sbjct: 21174723 ccaccgccaccgccttcgccctccac 21174748
>emb|Z95325.2|HS287L14 Human DNA sequence from clone RP1-287L14 on chromosome Xq21.1-21.33 Contains STSs and GSSs, complete sequence Length = 112831 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1804 actccagccttgtgacagtgca 1825 |||||||||||||||||||||| Sbjct: 19353 actccagccttgtgacagtgca 19374
>gb|AC008632.6|AC008632 Homo sapiens chromosome 5 clone CTB-164N12, complete sequence Length = 112687 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 524 tttggtgtgtgtgtgcctgtag 545 |||||||||||||||||||||| Sbjct: 91458 tttggtgtgtgtgtgcctgtag 91479
>gb|AC010358.5|AC010358 Homo sapiens chromosome 5 clone CTD-2031C5, complete sequence Length = 159129 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1804 actccagccttgtgacagtgca 1825 |||||||||||||||||||||| Sbjct: 124427 actccagccttgtgacagtgca 124406
>gb|AC114425.14| Mus musculus chromosome 5, clone RP24-85B11, complete sequence Length = 208233 Score = 44.1 bits (22), Expect = 1.8 Identities = 22/22 (100%) Strand = Plus / Plus Query: 342 taaatataaatacgtatatatc 363 |||||||||||||||||||||| Sbjct: 85762 taaatataaatacgtatatatc 85783
>emb|AL607002.3|OSJN00117 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085H03, complete sequence Length = 132393 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 200 ccaccgccaccgccttcgtcctccac 225 |||||||||||||||||| ||||||| Sbjct: 112109 ccaccgccaccgccttcgccctccac 112134
>gb|AC160122.2| Mus musculus BAC clone RP23-390G1 from chromosome 13, complete sequence Length = 208856 Score = 44.1 bits (22), Expect = 1.8 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1242 tgtgtcatttatttcctttgatgcag 1267 |||||| ||||||||||||||||||| Sbjct: 75405 tgtgtcttttatttcctttgatgcag 75430
>gb|AC186843.2| Gallus gallus BAC clone CH261-64I12 from chromosome z, complete sequence Length = 210875 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 343 aaatataaatacgtatatatctctt 367 ||||||||||| ||||||||||||| Sbjct: 48265 aaatataaatatgtatatatctctt 48241
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1693 ctccccaactccggccattgg 1713 ||||||||||||||||||||| Sbjct: 20224924 ctccccaactccggccattgg 20224904
>gb|AC187599.2| Gallus gallus BAC clone CH261-12A19 from chromosome z, complete sequence Length = 200572 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 343 aaatataaatacgtatatatctctt 367 ||||||||||| ||||||||||||| Sbjct: 188492 aaatataaatatgtatatatctctt 188468
>ref|XR_014331.1| PREDICTED: Macaca mulatta similar to Hook-related protein 1 (LOC717103), mRNA Length = 10122 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 846 ccaagtgttttattatttctt 866 ||||||||||||||||||||| Sbjct: 9806 ccaagtgttttattatttctt 9826
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1359 tcttccttcatcgcttccatc 1379 ||||||||||||||||||||| Sbjct: 3791786 tcttccttcatcgcttccatc 3791806
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 145 caccagaccgaaaccctcgcc 165 ||||||||||||||||||||| Sbjct: 575709 caccagaccgaaaccctcgcc 575689
>gb|AC146865.11| Medicago truncatula clone mth2-36m14, complete sequence Length = 128493 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 taaatacgtatatatctctta 368 ||||||||||||||||||||| Sbjct: 84682 taaatacgtatatatctctta 84702
>ref|XM_607530.2| PREDICTED: Bos taurus similar to HpaII tiny fragments locus 9C (LOC529090), mRNA Length = 1380 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 216 cgtcctccacggcctcctggg 236 ||||||||||||||||||||| Sbjct: 877 cgtcctccacggcctcctggg 857
>gb|AC129205.3| Mus musculus BAC clone RP24-235I5 from chromosome 19, complete sequence Length = 165024 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 833 gttcctctgtttgccaagtgt 853 ||||||||||||||||||||| Sbjct: 125076 gttcctctgtttgccaagtgt 125056
>gb|AC132463.3| Mus musculus BAC clone RP23-42M5 from chromosome 13, complete sequence Length = 151340 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 843 ttgccaagtgttttattattt 863 ||||||||||||||||||||| Sbjct: 102931 ttgccaagtgttttattattt 102951
>gb|AC110508.8| Mus musculus chromosome 3, clone RP23-382L1, complete sequence Length = 224790 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 ttttggtgtgtgtgtgcctgtagag 547 ||||||||||||||||| ||||||| Sbjct: 91106 ttttggtgtgtgtgtgcatgtagag 91082
>ref|NM_140938.1| Drosophila melanogaster CG13813-RA (CG13813), mRNA Length = 1293 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1693 ctccccaactccggccattgg 1713 ||||||||||||||||||||| Sbjct: 105 ctccccaactccggccattgg 85
>gb|AC079756.4| Homo sapiens BAC clone RP11-108J15 from 7, complete sequence Length = 168347 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 356 tatatatctcttaacatttta 376 ||||||||||||||||||||| Sbjct: 80428 tatatatctcttaacatttta 80408
>gb|AC145855.2| Pan troglodytes BAC clone RP43-5O24 from 7, complete sequence Length = 178643 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1001 catgtagttcactatatgtca 1021 ||||||||||||||||||||| Sbjct: 138998 catgtagttcactatatgtca 139018
>gb|AC130276.2| Homo sapiens chromosome 3 clone RP11-1076P5, complete sequence Length = 74595 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 1438 tggattggcagcaacttgaagaagg 1462 |||||||||||| |||||||||||| Sbjct: 72609 tggattggcagctacttgaagaagg 72633
>gb|AC009839.10| Drosophila melanogaster 3L BAC RP98-16G9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185918 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1693 ctccccaactccggccattgg 1713 ||||||||||||||||||||| Sbjct: 21795 ctccccaactccggccattgg 21775
>gb|AC009331.6| Homo sapiens chromosome 7 clone RP11-371N6, complete sequence Length = 158298 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1001 catgtagttcactatatgtca 1021 ||||||||||||||||||||| Sbjct: 38704 catgtagttcactatatgtca 38684
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 gttcagacttcagagagctga 489 ||||||||||||||||||||| Sbjct: 669188 gttcagacttcagagagctga 669168
>gb|AC009383.8| Drosophila melanogaster 3L BAC RP98-31C3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179283 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1693 ctccccaactccggccattgg 1713 ||||||||||||||||||||| Sbjct: 160932 ctccccaactccggccattgg 160912
>emb|AL138957.13| Human DNA sequence from clone RP11-203P2 on chromosome 13 Contains two novel genes, complete sequence Length = 173315 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 ccccttttattaaatataaat 352 ||||||||||||||||||||| Sbjct: 68529 ccccttttattaaatataaat 68509
>gb|BT022472.1| Drosophila melanogaster IP11764 full insert cDNA Length = 1529 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1693 ctccccaactccggccattgg 1713 ||||||||||||||||||||| Sbjct: 135 ctccccaactccggccattgg 115
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 gttcagacttcagagagctga 489 ||||||||||||||||||||| Sbjct: 147241 gttcagacttcagagagctga 147221
>gb|AC083871.2|AC083871 Homo sapiens chromosome 7 clone RP11-140I14, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1001 catgtagttcactatatgtca 1021 ||||||||||||||||||||| Sbjct: 64167 catgtagttcactatatgtca 64187
>gb|AC009264.6|AC009264 Homo sapiens chromosome 7 clone RP11-271F4, complete sequence Length = 164824 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1516 aattcttacagagatagaagc 1536 ||||||||||||||||||||| Sbjct: 110769 aattcttacagagatagaagc 110749
>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1399_H05 Length = 147670 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 469 gttcagacttcagagagctga 489 ||||||||||||||||||||| Sbjct: 26083 gttcagacttcagagagctga 26063
>gb|AC025572.13|AC025572 Homo sapiens 3 BAC RP11-58O15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 191510 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1438 tggattggcagcaacttgaagaagg 1462 |||||||||||| |||||||||||| Sbjct: 189532 tggattggcagctacttgaagaagg 189508
>gb|AC009332.6|AC009332 Homo sapiens chromosome 7 clone RP11-348O21, complete sequence Length = 148471 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1516 aattcttacagagatagaagc 1536 ||||||||||||||||||||| Sbjct: 133439 aattcttacagagatagaagc 133419
>emb|AL683856.10| Mouse DNA sequence from clone RP23-46J2 on chromosome X, complete sequence Length = 224461 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 520 atattttggtgtgtgtgtgcctgta 544 ||||||||||||||||||| ||||| Sbjct: 161919 atattttggtgtgtgtgtgtctgta 161943
>ref|XM_668137.1| Plasmodium berghei strain ANKA hypothetical protein (PB104088.00.0) partial mRNA Length = 342 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 taaatataaatacgtatatat 362 ||||||||||||||||||||| Sbjct: 44 taaatataaatacgtatatat 24
>emb|AL772179.17| Mouse DNA sequence from clone RP23-100B18 on chromosome 2, complete sequence Length = 194065 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1011 actatatgtcacaaagtaaag 1031 ||||||||||||||||||||| Sbjct: 143743 actatatgtcacaaagtaaag 143723
>emb|CT025667.9| Mouse DNA sequence from clone RP23-227F4 on chromosome 13, complete sequence Length = 206864 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 843 ttgccaagtgttttattattt 863 ||||||||||||||||||||| Sbjct: 179538 ttgccaagtgttttattattt 179518
>gb|AC002108.1|AC002108 Genomic sequence from Mouse 4, complete sequence Length = 41125 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 880 gtgatttttgcaacttacagt 900 ||||||||||||||||||||| Sbjct: 7317 gtgatttttgcaacttacagt 7297
>emb|AL831754.2| Mouse DNA sequence from clone RP23-295A1 on chromosome 4, complete sequence Length = 189029 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1098 ttgtgattatgttgtcagaat 1118 ||||||||||||||||||||| Sbjct: 44107 ttgtgattatgttgtcagaat 44127
>emb|AL844515.6| Mouse DNA sequence from clone RP23-133G5 on chromosome 2, complete sequence Length = 216464 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 842 tttgccaagtgttttattatt 862 ||||||||||||||||||||| Sbjct: 194081 tttgccaagtgttttattatt 194101
>emb|AL844178.7| Mouse DNA sequence from clone RP23-352K10 on chromosome 4, complete sequence Length = 186608 Score = 42.1 bits (21), Expect = 7.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 880 gtgatttttgcaacttacagt 900 ||||||||||||||||||||| Sbjct: 50867 gtgatttttgcaacttacagt 50847
>emb|AL627086.22| Mouse DNA sequence from clone RP23-477P14 on chromosome 3, complete sequence Length = 106019 Score = 42.1 bits (21), Expect = 7.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 523 ttttggtgtgtgtgtgcctgtagag 547 ||||||||||||||||| ||||||| Sbjct: 53438 ttttggtgtgtgtgtgcatgtagag 53414 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 348,168,638 Number of extensions: 28477352 Number of successful extensions: 453750 Number of sequences better than 10.0: 56 Number of HSP's gapped: 453745 Number of HSP's successfully gapped: 77 Length of query: 1880 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1857 Effective length of database: 18,503,978,556 Effective search space: 34361888178492 Effective search space used: 34361888178492 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
