ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf56a04 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os01g37480:12001.t03290:unspliced-genomic expressed protein| Length = 3641 Score = 202 bits (435), Expect(6) = e-113 Identities = 85/106 (80%), Positives = 96/106 (90%) Frame = +2 / +2 Query: 455 EMLAGSYFCVAGALVGIINPGRMILFGTLLVIWGLVKDALFRKPVISDPTEPVYVYPTIL 634 ++LAGSYFC AGALVG+INPGRM LFGTLLVIWGLVK+ALF KPV SDPT+ V+VYPTIL Sbjct: 2972 QILAGSYFCAAGALVGVINPGRMTLFGTLLVIWGLVKEALFGKPVNSDPTQSVHVYPTIL 3151 Query: 635 IALICSFMSITYNVKKKAMSSQSVSISKPLQSSAKSKLK*VLYCQF 772 IALIC+F+SITYNVKK +SQSVSI+KPLQSSAKSKLK* L+C F Sbjct: 3152 IALICAFLSITYNVKKTVRNSQSVSITKPLQSSAKSKLK*TLHCLF 3289 Score = 107 bits (228), Expect(6) = e-113 Identities = 43/50 (86%), Positives = 47/50 (94%) Frame = +2 / +3 Query: 215 FRVPCRAGTCTTPIQITSSQLVSNEIFPPSVVKAMLYPGAIVRNLTTSMS 364 FRVPCRAGTCTTPIQ+TSSQLVSNEIFPPSVVKA+L+PGAI NLT SM+ Sbjct: 2643 FRVPCRAGTCTTPIQVTSSQLVSNEIFPPSVVKALLFPGAIASNLTKSMT 2792 Score = 78.5 bits (165), Expect(6) = e-113 Identities = 34/46 (73%), Positives = 36/46 (78%) Frame = +2 / +3 Query: 89 PIVAGPPQVQRRRVSGGGWTSRRISFYASRVYFVLIILQIPLFRVP 226 P A QVQRR V GG WTSRRISFYASR +F+LIILQIPLFR P Sbjct: 141 PAPAPAVQVQRRPVGGGRWTSRRISFYASRAFFLLIILQIPLFRSP 278 Score = 76.2 bits (160), Expect(6) = e-113 Identities = 31/34 (91%), Positives = 33/34 (97%) Frame = +2 / +3 Query: 362 SMTFPRWSDLFDIYNLTEAKNASAVIDLQRLEML 463 SMTFPRW+DLFDIYNLTEAK ASAVIDLQRLE+L Sbjct: 2784 SMTFPRWNDLFDIYNLTEAKTASAVIDLQRLEVL 2885 Score = 35.4 bits (71), Expect(6) = e-113 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = +3 / +3 Query: 840 RIA*LWFSCITLNTVTINFSHLYRSLTLSTIL 935 RI LWF C TLNTVT +F + L L +L Sbjct: 3345 RITLLWFLCTTLNTVTFSFHLCIKDLYL*LLL 3440 Score = 23.5 bits (45), Expect(6) = e-113 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = +3 / +1 Query: 780 PFIDVVHLHHLIAE 821 PFI VVH H I E Sbjct: 3292 PFILVVHFHKFIVE 3333 Score = 180 bits (387), Expect(5) = 3e-92 Identities = 84/105 (80%), Positives = 86/105 (81%) Frame = -2 / -3 Query: 771 N*Q*STYFSFDLAELCSGLEIETDWLLIAFFFTL*VIDMNEQISAIKMVG*T*TGSVGSL 592 N Q*S YFSFDLAELC GL IETD L + FFTL*VID N QISAIKMVG*T*T VGSL Sbjct: 3288 NRQ*SVYFSFDLAELCRGLVIETD*LFLTVFFTL*VIDKNAQISAIKMVG*T*TDCVGSL 3109 Query: 591 MTGFRKSASFTRPQITKSVPNKIILPGLMMPTSAPATQK*LPASI 457 TGF KSASFTRPQITK VPNK+ILPG M PTSAPA QK*LPA I Sbjct: 3108 FTGFPKSASFTRPQITKRVPNKVILPGFMTPTSAPAAQK*LPARI 2974 Score = 95.5 bits (202), Expect(5) = 3e-92 Identities = 41/50 (82%), Positives = 44/50 (88%) Frame = -2 / -2 Query: 363 LMLVVRLRTIAPG*SMAFTTDGGNISFETNCEDVI*IGVVHVPALQGTLK 214 +ML+VRL IAPG AFTTDGGNISFETNCEDV *+GVVHVPALQGTLK Sbjct: 2791 VMLLVRLLAIAPGKRRAFTTDGGNISFETNCEDVT*MGVVHVPALQGTLK 2642 Score = 65.7 bits (137), Expect(5) = 3e-92 Identities = 31/46 (67%), Positives = 31/46 (67%) Frame = -2 / -2 Query: 225 GTLKSGI*RMMSTK*TREA*KDIRRLVHPPPLTLRRCTWGGPATIG 88 G LKSGI RMM K REA* DIRRLVH PP T RRCTW A G Sbjct: 277 GDLKSGIWRMMRRKKAREA*NDIRRLVHRPPPTGRRCTWTAGAGAG 140 Score = 59.3 bits (123), Expect(5) = 3e-92 Identities = 27/36 (75%), Positives = 31/36 (86%) Frame = -2 / -2 Query: 462 SISRRCRSITAEAFLASVRLYMSNRSLHLGNVMLML 355 S SRR RSITAEA LASV+L +SNRS HLGNVML++ Sbjct: 2884 STSRRWRSITAEAVLASVKL*ISNRSFHLGNVMLLV 2777 Score = 30.4 bits (60), Expect(5) = 3e-92 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -1 / -2 Query: 895 KLIVTVLRVIHENHNQAIL 839 KL VTV +V+H+NH+ IL Sbjct: 3400 KLKVTVFKVVHKNHSSVIL 3344 Score = 180 bits (387), Expect(5) = 2e-86 Identities = 74/111 (66%), Positives = 82/111 (73%) Frame = +1 / +1 Query: 445 TASRDACWKLLLCCWSTRWHH*SWEDDLVWYAFGYLGSCEGCALPEACHQ*SNRTSLCLS 624 T+ D+CWKLLLCCWST W H WEDDLVWY FGYLGS E AL E Q*SN S CLS Sbjct: 2962 TSQPDSCWKLLLCCWSTCWCHKPWEDDLVWYPFGYLGSSERSALWETGEQ*SNTISSCLS 3141 Query: 625 YHFDCTDLFIHVNNLQCKEEGDEQPVCFYL*ATAKLCQVKTEVGTLLSVCP 777 HF+CTDL I VNNLQCKE+ + VCF *A+AK CQV+TEV T LS+CP Sbjct: 3142 DHFNCTDLCILVNNLQCKEDSKK*SVCFNH*ASAKFCQVETEVDTSLSICP 3294 Score = 93.6 bits (198), Expect(5) = 2e-86 Identities = 35/49 (71%), Positives = 42/49 (85%) Frame = +1 / +2 Query: 217 QGPL*SRHMHHTNSNYIFTVGLK*DIPTICCEGHALPWSYSAQPHYKHE 363 QGPL*SRHMH+ +S+YIF VGLK*DIPTICCE +LPW YS QP+ +H+ Sbjct: 2645 QGPL*SRHMHNAHSSYIFAVGLK*DIPTICCESPSLPWGYSKQPY*EHD 2791 Score = 64.8 bits (135), Expect(5) = 2e-86 Identities = 27/37 (72%), Positives = 28/37 (75%) Frame = +1 / +2 Query: 109 PGAATEGERRRVDEPPDILLCLPRLLRAHHPSDPALQ 219 PGAA G R VDEPPDI+L LPRLL HHP DPALQ Sbjct: 161 PGAAAAGGRGPVDEPPDIVLRLPRLLPPHHPPDPALQ 271 Score = 48.3 bits (99), Expect(5) = 2e-86 Identities = 24/32 (75%), Positives = 26/32 (81%) Frame = +3 / +1 Query: 363 A*HFQGGVTCSTYTI*QKLRMLQQ*LIYSV*R 458 A*HF GG+TC +TI*QK R LQQ*LI SV*R Sbjct: 2785 A*HFLGGMTCLIFTI*QKPRPLQQ*LISSV*R 2880 Score = 24.4 bits (47), Expect(5) = 2e-86 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +2 / +2 Query: 839 KDCLIMVLMYHS*YCN 886 KD +VL+YH YCN Sbjct: 3344 KDNTTVVLVYHFEYCN 3391 Score = 157 bits (337), Expect(4) = 9e-74 Identities = 70/106 (66%), Positives = 79/106 (74%) Frame = -1 / -2 Query: 772 KLTIKYLLQF*LGRALQWLRDRNRLAAHRLLLYIVSY*HE*TNQCNQNGRIDIDWFCWIT 593 K T+K LLQF LGR LQ L D NRL LLYIVSY* E TNQCN NGRI+++ CWIT Sbjct: 3289 K*TMKCLLQFRLGRTLQRLSD*NRLTISYCLLYIVSY*QECTNQCN*NGRINMN*LCWIT 3110 Query: 592 DDRLPEERILHKTPDNQKRTKQDHPPRINDANECSSNTEVASSKHL 455 R P+ER H TPDNQK TKQ HPPR+ D N+CSS+TEVASSK+L Sbjct: 3109 VHRFPKERFFH*TPDNQKGTKQGHPPRVYDTNKCSSSTEVASSKNL 2972 Score = 93.2 bits (197), Expect(4) = 9e-74 Identities = 38/49 (77%), Positives = 39/49 (79%) Frame = -1 / -1 Query: 361 HACSEVAHYSSRVEHGLHNRWWEYLI*DQL*RCNLNWCGACACSTRDPE 215 HA S+VA YS R E G HNRWWEYLI*DQL RCNLN ACACSTRDPE Sbjct: 2789 HALSKVACYSPREEKGFHNRWWEYLI*DQLRRCNLNGRCACACSTRDPE 2643 Score = 57.4 bits (119), Expect(4) = 9e-74 Identities = 24/34 (70%), Positives = 28/34 (82%) Frame = -1 / -1 Query: 463 KHL*TL*INYC*SILSFCQIVYVEQVTPPWKCHA 362 ++L*TL INYC*S L FCQIV ++QV PP KCHA Sbjct: 2885 EYL*TLEINYC*SGLGFCQIVNIKQVIPPRKCHA 2784 Score = 40.0 bits (81), Expect(4) = 9e-74 Identities = 15/21 (71%), Positives = 17/21 (80%) Frame = -1 / -1 Query: 220 PEERDLKDDEHEVDAGGIEGY 158 PEERDL+DDE E AGG+E Y Sbjct: 272 PEERDLEDDEEEEGAGGVERY 210 Score = 146 bits (313), Expect(3) = 3e-63 Identities = 72/107 (67%), Positives = 79/107 (73%) Frame = -3 / -1 Query: 776 GQTDNKVPTSVLTWQSFAVA*R*KQTGCSSPSSLHCKLLT*MNKSVQSKW*DRHRLVLLD 597 GQ DN+V TSV TWQ+FA A* KQT SSLHCKLLT M+KSVQ KW D+H L++LD Sbjct: 3293 GQIDNEVSTSVSTWQNFAEA**LKQTDYFLLSSLHCKLLTRMHKSVQLKWSDKHELIVLD 3114 Query: 596 H**QASGRAHPSQDPR*PKAYQTRSSSQD**CQRVLQQHRSSFQQAS 456 H S RA S DPR*PK YQTRSSSQ * Q+VLQQHRSSFQQ S Sbjct: 3113 HCSPVSQRALLSLDPR*PKGYQTRSSSQGL*HQQVLQQHRSSFQQES 2973 Score = 82.6 bits (174), Expect(3) = 3e-63 Identities = 38/49 (77%), Positives = 38/49 (77%) Frame = -3 / -3 Query: 362 SCL**GCAL*LQGRAWPSQQMVGISHLRPTVKM*FELVWCMCLLYKGP* 216 SC **GC L* QGR SQQMVGISHLRPT KM* E CMCLLYKGP* Sbjct: 2790 SCS**GCLL*PQGREGLSQQMVGISHLRPTAKM*LEWALCMCLLYKGP* 2644 Score = 52.8 bits (109), Expect(3) = 3e-63 Identities = 24/36 (66%), Positives = 28/36 (77%) Frame = -3 / -3 Query: 467 QQASLDAVDQLLLKHS*LLSDCICRTGHSTLEMSCS 360 ++ LDA DQLLLK S LLS+C +TGHST EMSCS Sbjct: 2889 KRVPLDAGDQLLLKRSWLLSNCKYQTGHST*EMSCS 2782 Score = 82.2 bits (173), Expect(4) = 7e-51 Identities = 41/59 (69%), Positives = 43/59 (72%) Frame = +3 / +3 Query: 597 IQQNQSMSILPF*LH*FVHSCQ*LTMXXXXXXAASLFLSLSHCKALPSQN*SRYFIVSL 773 IQ NQ M I PF*LH*FVHSCQ*LTM SLF SLS CK LPS+N*SR+FIV L Sbjct: 3114 IQHNQFMFIRPF*LH*FVHSCQ*LTM*RRQ*EIVSLFQSLSLCKVLPSRN*SRHFIVYL 3290 Score = 77.1 bits (162), Expect(4) = 7e-51 Identities = 35/46 (76%), Positives = 38/46 (82%) Frame = +3 / +1 Query: 225 LVEQAHAPHQFKLHLHSWSQMRYSHHLL*RPCSTLEL*CATSLQA* 362 LVEQAHA FKLHL SWSQMRYSHHLL*+P S+L L* AT L+A* Sbjct: 2653 LVEQAHAQRPFKLHLRSWSQMRYSHHLL*KPFSSLGL*QATLLRA* 2790 Score = 51.9 bits (107), Expect(4) = 7e-51 Identities = 24/31 (77%), Positives = 24/31 (77%) Frame = +3 / +3 Query: 456 RCLLEATSVLLEHSLASLILGG*SCLVRFWL 548 R LLEATSVLLEH L S LGG* CLV FWL Sbjct: 2973 RFLLEATSVLLEHLLVS*TLGG*PCLVPFWL 3065 Score = 46.9 bits (96), Expect(4) = 7e-51 Identities = 24/40 (60%), Positives = 29/40 (72%) Frame = +1 / +2 Query: 361 EHDISKVE*PVRHIQSDRS*ECFSSN*STASRDACWKLLL 480 EHDIS VE*PV ++Q DRS + FSSN*S ASR + L+ Sbjct: 2783 EHDIS*VE*PV*YLQFDRSQDRFSSN*SPASRGTLFFFLI 2902
>LOC_Os01g07890:12001.t00669:unspliced-genomic expressed protein| Length = 729 Score = 40.0 bits (81), Expect = 0.028 Identities = 14/39 (35%), Positives = 27/39 (69%) Frame = +2 / +2 Query: 554 GLVKDALFRKPVISDPTEPVYVYPTILIALICSFMSITY 670 G + +FRKPV+S+P++P P +L + IC+ +S+++ Sbjct: 338 GCIFCGIFRKPVLSEPSKPRRF*PFVLFSTICAELSVSF 454
>LOC_Os01g32780:12001.t02850:unspliced-genomic ethylene-responsive protein, putative, expressed| Length = 2937 Score = 35.4 bits (71), Expect = 0.68 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 / +3 Query: 652 IHVNNLQCKEEGDEQPVCFYL*ATAKLCQVKT 747 IHV + C+ E DE P C Y+* C + T Sbjct: 2829 IHVAGICCRTEDDEHPTCVYM*YVCMFCYLFT 2924
>LOC_Os07g36740:12007.t03343:unspliced-genomic CSLF4 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase| Length = 6052 Score = 35.0 bits (70), Expect = 0.93 Identities = 14/25 (56%), Positives = 14/25 (56%) Frame = +1 / +1 Query: 175 PRLLRAHHPSDPALQGPL*SRHMHH 249 PRLLR HH GPL RH HH Sbjct: 4771 PRLLRRHHALPQRPPGPLLPRHRHH 4845
>LOC_Os01g67480:12001.t06105:unspliced-genomic helix-loop-helix DNA-binding domain containing protein, expressed| Length = 5331 Score = 34.5 bits (69), Expect = 1.3 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +3 / -2 Query: 867 ITLNTVTINFSHLYRSLTLSTI 932 IT+ +TIN HLYRS TL T+ Sbjct: 1196 ITVELITINLMHLYRSSTLDTV 1131
>LOC_Os10g33420:12010.t02642:unspliced-genomic expressed protein| Length = 8272 Score = 34.5 bits (69), Expect = 1.3 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = +2 / -1 Query: 902 FVPKSHTIYNFDSRNFKSHYVLLDYFDCSISRLFLL 1009 F +SHTIY+ S +F HY+ YF S S L+ Sbjct: 7234 FPIRSHTIYSSQSSSFNLHYIEFKYFLQSTSYFILI 7127
>LOC_Os08g36250:12008.t03365:unspliced-genomic expressed protein| Length = 1852 Score = 34.1 bits (68), Expect = 1.8 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = -1 / -2 Query: 247 GACACSTRDPEERDLKDDEHEVDAGGIEG 161 G C R EER+ K++E E + GG EG Sbjct: 249 GGCPAHCRTEEERERKEEEREEERGGKEG 163
>LOC_Os03g60360:12003.t05275:unspliced-genomic myosin-like protein, putative, expressed| Length = 5542 Score = 34.1 bits (68), Expect = 1.8 Identities = 8/17 (47%), Positives = 11/17 (64%) Frame = +1 / -3 Query: 451 SRDACWKLLLCCWSTRW 501 +R +CW + CCWS W Sbjct: 299 TRSSCWAAMSCCWSATW 249
>LOC_Os03g21660:12003.t01919:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 3767 Score = 25.8 bits (50), Expect(2) = 2.4 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +1 / -1 Query: 316 HALPWSYSAQPHYKHEH 366 H PWS A H++H H Sbjct: 3428 HLQPWSKIAHTHHQHLH 3378 Score = 24.9 bits (48), Expect(2) = 2.4 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = +3 / -1 Query: 264 HLHSWSQMRYSHHL 305 H+ WS++ ++HHL Sbjct: 3464 HMQPWSRIAHTHHL 3423
>LOC_Os08g30040:12008.t02757:unspliced-genomic transposon protein, putative, unclassified| Length = 3024 Score = 25.8 bits (50), Expect(2) = 2.4 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +1 / -3 Query: 316 HALPWSYSAQPHYKHEH 366 H PWS A H++H H Sbjct: 2833 HLQPWSKIAHTHHQHLH 2783 Score = 24.9 bits (48), Expect(2) = 2.4 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = +3 / -3 Query: 264 HLHSWSQMRYSHHL 305 H+ WS++ ++HHL Sbjct: 2869 HMQPWSRIAHTHHL 2828
>LOC_Os11g19480:12011.t01718:unspliced-genomic ATP binding protein, putative, expressed| Length = 1725 Score = 33.6 bits (67), Expect = 2.4 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = +1 / +3 Query: 112 GAATEGERRRVDEPPDILLCLPRLLRAHHPSDPALQGPL 228 GA RRR +EP + RL RA P PA Q PL Sbjct: 249 GATRRRRRRRREEPVRVRAVRARLARAPPPPQPARQPPL 365
>LOC_Os06g06330:12006.t00519:unspliced-genomic expressed protein| Length = 810 Score = 33.6 bits (67), Expect = 2.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -1 / -2 Query: 373 KCHAHACSEVAHYSSRVEHGLHNRWWEYLI 284 K H H CSE +S HGLHN + ++I Sbjct: 668 KIHEH*CSETLKHSEIQNHGLHNNFNLFII 579
>LOC_Os02g07870:12002.t00683:unspliced-genomic vacuolar ATP synthase catalytic subunit A, putative, expressed| Length = 7425 Score = 33.6 bits (67), Expect = 2.4 Identities = 12/16 (75%), Positives = 13/16 (81%) Frame = -1 / -1 Query: 352 SEVAHYSSRVEHGLHN 305 SE AHYSSRV H +HN Sbjct: 870 SESAHYSSRVHHSIHN 823
>LOC_Os04g19640:12004.t01704:unspliced-genomic hypothetical protein| Length = 2430 Score = 25.4 bits (49), Expect(2) = 3.3 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +1 / -3 Query: 316 HALPWSYSAQPHYKHEH 366 H PWS A H++H H Sbjct: 2239 HLHPWSKIAHTHHQHLH 2189 Score = 24.9 bits (48), Expect(2) = 3.3 Identities = 6/14 (42%), Positives = 11/14 (78%) Frame = +3 / -3 Query: 264 HLHSWSQMRYSHHL 305 H+ WS++ ++HHL Sbjct: 2275 HMQPWSRIAHTHHL 2234
>LOC_Os08g44950:12008.t04217:unspliced-genomic RING-H2 finger protein ATL2G precursor, putative, expressed| Length = 726 Score = 33.1 bits (66), Expect = 3.3 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = +1 / +3 Query: 151 PPDILLCLPRLLRAHHPSDPALQGPL*SRHMHH 249 PP + L R L H P PALQGP RH H Sbjct: 345 PPLLPHRLHRRLARHRPHLPALQGPCHRRHQPH 443
>LOC_Os05g26290:12005.t02283:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2571 Score = 33.1 bits (66), Expect = 3.3 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = -2 / +1 Query: 507 MMPTSAPATQK*LPASISRRCRSITAEAFLASVRLYMSNRSLHLGNV 367 ++P+ APATQ PAS R S A + RL M + H G V Sbjct: 685 VVPSVAPATQPTAPASTPLRATSAMAPGQPMNPRLLMREHTQHSGQV 825
>LOC_Os01g63690:12001.t05737:unspliced-genomic nematode-resistance protein, putative, expressed| Length = 1998 Score = 33.1 bits (66), Expect = 3.3 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +1 / +1 Query: 91 DRRGASPGAATEGERRRVDEPPDILLCLPRLLRAHHP 201 DR GA +GER V PPD + R L A HP Sbjct: 808 DRAGAQDRLPQQGERGAVHYPPDTRVLAVRGLTASHP 918
>LOC_Os01g39680:12001.t03494:unspliced-genomic expressed protein| Length = 3991 Score = 33.1 bits (66), Expect = 3.3 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -1 / -3 Query: 385 TPPWKCHAHACSEVAHYSSRVEHGLH 308 +PPW AH+ + H+S + HG H Sbjct: 2984 SPPWNQVAHSLQQPCHHSHTITHGSH 2907
>LOC_Os06g18910:12006.t01714:unspliced-genomic hypothetical protein| Length = 1329 Score = 28.1 bits (55), Expect(2) = 3.4 Identities = 8/12 (66%), Positives = 10/12 (83%) Frame = -1 / -1 Query: 382 PPWKCHAHACSE 347 PPW+C AH+ SE Sbjct: 264 PPWQCSAHSSSE 229 Score = 22.1 bits (42), Expect(2) = 3.4 Identities = 5/9 (55%), Positives = 8/9 (88%) Frame = -3 / -2 Query: 257 ELVWCMCLL 231 E +WC+CL+ Sbjct: 110 EALWCLCLI 84
>LOC_Os09g40085:12009.t03473:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1503 Score = 32.7 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 / +3 Query: 97 RGASPGAATEGERRRVDEPPDILLCLPRLLRAHH 198 RGA GA EG +RR L LPR R HH Sbjct: 1020 RGAGEGAGREGAQRRGGHGRKRLSRLPRSCRTHH 1121
>LOC_Os09g40018:12009.t03466:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3155 Score = 32.7 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 / +2 Query: 97 RGASPGAATEGERRRVDEPPDILLCLPRLLRAHH 198 RGA GA EG +RR L LPR R HH Sbjct: 2672 RGAGEGAGREGAQRRGGHGRKRLSRLPRSCRTHH 2773
>LOC_Os09g40010:12009.t03464:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3155 Score = 32.7 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 / +2 Query: 97 RGASPGAATEGERRRVDEPPDILLCLPRLLRAHH 198 RGA GA EG +RR L LPR R HH Sbjct: 2672 RGAGEGAGREGAQRRGGHGRKRLSRLPRSCRTHH 2773
>LOC_Os09g39890:12009.t03453:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3503 Score = 32.7 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 / +2 Query: 97 RGASPGAATEGERRRVDEPPDILLCLPRLLRAHH 198 RGA GA EG +RR L LPR R HH Sbjct: 2567 RGAGEGAGREGAQRRGGHGRKRLSRLPRSCRTHH 2668
>LOC_Os06g25180:12006.t02326:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4714 Score = 32.7 bits (65), Expect = 4.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -1 / -3 Query: 298 WEYLI*DQL*RCNLNWCGACACSTR 224 W I*++L RCNL+ C C STR Sbjct: 1265 WRKKI*NKLWRCNLSCCCTCVLSTR 1191
>LOC_Os04g36058:12004.t03276:unspliced-genomic expressed protein| Length = 2980 Score = 32.7 bits (65), Expect = 4.5 Identities = 14/25 (56%), Positives = 16/25 (64%) Frame = -2 / -2 Query: 606 SVGSLMTGFRKSASFTRPQITKSVP 532 S GS T FR + TRPQ+ KSVP Sbjct: 2763 STGSPATEFRTNREHTRPQLIKSVP 2689
>LOC_Os04g32720:12004.t02950:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3236 Score = 32.7 bits (65), Expect = 4.5 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +1 / +1 Query: 97 RGASPGAATEGERRRVDEPPDILLCLPRLLRAHH 198 RGA GA EG +RR P LPR R HH Sbjct: 2605 RGAGEGAGREGAQRRGGRGPRRPSRLPRSRRTHH 2706
>LOC_Os03g12170:12003.t01016:unspliced-genomic hypothetical protein| Length = 1569 Score = 32.7 bits (65), Expect = 4.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 / -2 Query: 469 KLLLCCWSTRWHH*SWE 519 KL+L C RWHH* W+ Sbjct: 1403 KLMLICHQRRWHH*RWQ 1353
>LOC_Os09g28910:12009.t02569:unspliced-genomic carbonic anhydrase, chloroplast precursor, putative, expressed| Length = 4761 Score = 32.2 bits (64), Expect = 6.2 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 / +1 Query: 600 GSLMTGFRKSASFTRPQITKSVPNKIIL 517 G+++ +S +F RPQ T S PNK +L Sbjct: 1 GTVLLSLSRSLAFRRPQATNSKPNKPVL 84
>LOC_Os09g26970:12009.t02376:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 8453 Score = 32.2 bits (64), Expect = 6.2 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +1 / +1 Query: 646 LFIHVNNLQCKEEGDEQPVCFYL*ATAKLCQVK 744 L +HVNNLQC+++ +Q + +L + + C K Sbjct: 8077 LGVHVNNLQCQDQVQKQNIRLWLMSQLRSCGCK 8175
>LOC_Os08g37790:12008.t03515:unspliced-genomic phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast| precursor, putative, expressed Length = 4033 Score = 29.5 bits (58), Expect(2) = 6.7 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +1 / +2 Query: 94 RRGASPGAATEGERRRVDEPP 156 RRGA G A G RRR PP Sbjct: 314 RRGAQAGGAARGGRRRARVPP 376 Score = 24.9 bits (48), Expect(2) = 6.7 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = +3 / +1 Query: 750 SRYFIVSLSEPFIDVVHLHH 809 S++FI S+ I V+HL H Sbjct: 2149 SQFFIDCFSDELIHVIHLSH 2208
>LOC_Os04g45560:12004.t04090:unspliced-genomic hypothetical protein| Length = 510 Score = 31.8 bits (63), Expect = 8.6 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +3 / -3 Query: 234 QAHAPHQFKLHLHSWSQMRYSHHLL*RPCSTLE 332 Q H P +LH H HH++ PC+TL+ Sbjct: 157 QRHQPLALQLHHHQSEPPPAPHHVVSHPCTTLQ 59
>LOC_Os11g23030:12011.t01973:unspliced-genomic hypothetical protein| Length = 685 Score = 31.8 bits (63), Expect = 8.6 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +1 / -3 Query: 82 VKADRRGASPGAATEGERRRVDEPP 156 ++A R + P AAT GERRR+ PP Sbjct: 338 IQA*HRDSQPPAAT*GERRRLQTPP 264
>LOC_Os07g30440:12007.t02732:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 993 Score = 31.8 bits (63), Expect = 8.6 Identities = 12/26 (46%), Positives = 12/26 (46%) Frame = +1 / +3 Query: 307 CEGHALPWSYSAQPHYKHEHDISKVE 384 C H LPW S HY EH S E Sbjct: 804 CSPHHLPWRSSHPQHYSQEHTTSGQE 881
>LOC_Os06g22320:12006.t02046:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4792 Score = 31.8 bits (63), Expect = 8.6 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 / +3 Query: 253 WCGACACSTRDPEERDLK 200 WCGAC+C+ R + DL+ Sbjct: 3534 WCGACSCT*RSEADEDLR 3587
>LOC_Os05g36080:12005.t03201:unspliced-genomic transposon protein, putative, unclassified| Length = 4787 Score = 31.8 bits (63), Expect = 8.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 / -1 Query: 109 PGAATEGERRRVDEPPDILLCLPRLLRAHHPSDPAL 216 P AAT+G R + P LC+ R +A HP P + Sbjct: 740 PPAATKGANAR*EPSPQHRLCIRRPAQAIHPQRPKI 633
>LOC_Os03g53650:12003.t05718:unspliced-genomic cysteine synthase, putative, expressed| Length = 3956 Score = 31.8 bits (63), Expect = 8.6 Identities = 23/84 (27%), Positives = 38/84 (45%) Frame = +2 / +1 Query: 542 LVIWGLVKDALFRKPVISDPTEPVYVYPTILIALICSFMSITYNVKKKAMSSQSVSISKP 721 LV+ G + LF + + + + PT ++CS MSI ++ S SVS + Sbjct: 3193 LVVVGSLLRTLFCQAFLKPFMISIVLQPTKTS*ILCSNMSIAVICARRWSSRASVSATCR 3372 Query: 722 LQSSAKSKLK*VLYCQFVRALY*C 793 L SS +S+ + +C L C Sbjct: 3373 LSSSNRSRGRPKTWCSSHERLQHC 3444
>LOC_Os03g11140:12003.t00914:unspliced-genomic rho GTPase activator, putative, expressed| Length = 11233 Score = 31.8 bits (63), Expect = 8.6 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 / -3 Query: 577 EERILHKTPDNQKRTKQDHPPRINDANE 494 ++RI+H NQK+ K+ H +I+DA+E Sbjct: 350 KQRIMHIPLSNQKKKKRVHSSQIHDAHE 267
>LOC_Os02g35039:12002.t03141:unspliced-genomic NAD dependent epimerase/dehydratase family protein, expressed| Length = 11135 Score = 31.8 bits (63), Expect = 8.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = +1 / -3 Query: 295 PTICCEGHALPWSYSAQPHYKHEH 366 P G AL W S+QPH+ H H Sbjct: 5679 PRTLRSGKALKWGDSSQPHHHHRH 5608
>LOC_Os02g27110:12002.t02405:unspliced-genomic expressed protein| Length = 19204 Score = 25.4 bits (49), Expect(2) = 8.9 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = +1 / +2 Query: 952 VSLCTFRLLRLQHFTTLPF 1008 + LCTF +L + HF+ L + Sbjct: 6257 LDLCTFMVLNVSHFSFLEY 6313 Score = 23.1 bits (44), Expect(2) = 8.9 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 / +3 Query: 916 SHYLQF*FTQFQVSLCTF 969 SHY+ F FT Q S C++ Sbjct: 6177 SHYVHFFFT*KQTSGCSY 6230
>LOC_Os10g21784:12010.t003575:unspliced-genomic expressed protein| Length = 4441 Score = 27.2 bits (53), Expect(2) = 9.7 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = +2 / +2 Query: 674 VKKKAMSSQSVSISKPLQSSAKSKLK*VL 760 + K ++ +S+ KP+ S +K KLK* L Sbjct: 2453 INSKNCETKCISLRKPISSLSKHKLK*FL 2539 Score = 26.7 bits (52), Expect(2) = 9.7 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 / +1 Query: 261 LHLHSWSQMRYSHHLL*RPCS 323 LH WSQ + SHHL P S Sbjct: 811 LHFLFWSQPQRSHHLSPTPAS 873
>LOC_Os04g18640:12004.t01606:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4839 Score = 24.4 bits (47), Expect(2) = 10.0 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -2 / +2 Query: 600 GSLMTGFRKSASFTRPQITKSVPNKIILPGLMMPTSAPAT 481 G + ++ + +P I +S+P L P SAPAT Sbjct: 1799 GGVFPNYQPLITDNQPVIQQSIPLNAPLAQPTAPISAPAT 1918 Score = 24.0 bits (46), Expect(2) = 10.0 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 / +3 Query: 467 QQASLDAVDQLLLKHS*LLSDCICRTGHSTLE 372 Q L + L L+ *L+ DC HSTL+ Sbjct: 1899 QYRLLQLLHHLRLQAK*LIPDCW*ENNHSTLD 1994 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 396,604,139 Number of extensions: 6504230 Number of successful extensions: 29788 Number of sequences better than 10.0: 41 Length of query: 347 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 297 Effective length of database: 52,799,986 Effective search space: 15681595842 Effective search space used: 15681595842 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
