ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Os04g0450600:Os04g0450600 69 3e-12
2Os06g0257500:Os06g0257500 30 1.7
3Os12g0158300:Os12g0158300 29 3.8

>Os04g0450600:Os04g0450600 |
          Length = 217
 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 53/169 (31%), Positives = 79/169 (46%), Gaps = 3/169 (1%)
 Frame = +2

Query: 98  MAILMSCVTSKMLAPCIPVVSRQQRDTCISVSAHRRQIRI-GLAMKSWGTSCTVPPMRIR 274
           MA+L S V  K LA C P ++++ R+T +S SAHRRQI I GL M S G +  +P   +R
Sbjct: 1   MAVLKSLVACKGLALCAPAIAQRHRNTPLSASAHRRQILITGLTMNSSGINSALP---VR 57

Query: 275 GTTRIAAVGSDSGELREEKSPLPNKAAAISSDPGELPGKSSASNKSSL-XXXXXXXXXXX 451
           G  +I AVGS          P+P+  +   +    +   S     + +            
Sbjct: 58  GAAQIPAVGSGPPAPSGGNLPVPSMPSCFFNVISSISISSCIPTYAPVRAKWVVGAIIVA 117

Query: 452 XSFYGQMRAMEENVXXXXXXXXXXXXXXXDVVDKLADEVI-AFPGNENL 595
              Y ++RA+E+ V               +  +K+A E+  AFPGNENL
Sbjct: 118 IPIYRKIRALEDTVEKTAEVAIEVVDTVAEATEKVAGELADAFPGNENL 166



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>Os06g0257500:Os06g0257500 |
          Length = 352

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 384 GNSPGSELIAAALLGNGDFSSRNSPESEPTAAIRVVPLIRIGGTVQLV 241
           G+ PG E++    +G G+       E       R VP+ R+GG V L+
Sbjct: 222 GHEPGGEVLEHDAVGGGEEGEHVGDEVALVGGQRGVPVARVGGEVHLL 269



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>Os12g0158300:Os12g0158300 |
          Length = 345

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
 Frame = +2

Query: 275 GTTRIAAVGSDSGELREEKSPLP-----------NKAAAISSDPGELPGKSSASNKSSLX 421
           G  R AA  S    +R  + P P            KAAA   +  +LPGKSS+++ S L 
Sbjct: 136 GPGRPAATNSILATVRPRRPPPPPPPPPPAEEEKEKAAA---EAAQLPGKSSSTSSSQLV 192

Query: 422 XXXXXXXXXXXSFYGQMRA-MEENV 493
                        YG  RA MEE V
Sbjct: 193 EESVAVAVESEDPYGDFRASMEEMV 217


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 23,676,500
Number of extensions: 537231
Number of successful extensions: 1394
Number of sequences better than 10.0: 3
Number of HSP's gapped: 1392
Number of HSP's successfully gapped: 3
Length of query: 294
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 194
Effective length of database: 11,395,755
Effective search space: 2210776470
Effective search space used: 2210776470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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