| Clone Name | FLbaf51d03 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os04g37760:12004.t03346:unspliced-genomic expressed protein| Length = 2493 Score = 41.4 bits (84), Expect(3) = 1e-10 Identities = 19/35 (54%), Positives = 24/35 (68%) Frame = -2 / -3 Query: 679 NLVD*GLGFLCIFLYLFCDGFDPEGCLLKVFITGK 575 NL+D*GLGFL I LY G + G LL++F+ GK Sbjct: 1009 NLLD*GLGFLGIILYHIGYGLNLGGNLLEIFVAGK 905 Score = 40.5 bits (82), Expect(3) = 1e-10 Identities = 20/42 (47%), Positives = 21/42 (50%) Frame = -2 / -3 Query: 217 DSDLPTMS*YRNTCVPLLPRNHWDAWRQHFGCNT*HEDRHDI 92 D DLP MS R VP+ N W A RQ F N E RH I Sbjct: 250 DQDLPAMSRCR*RRVPVTLSNRWSAQRQAFASNKRFEHRHGI 125 Score = 28.6 bits (56), Expect(3) = 1e-10 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -2 / -3 Query: 556 EFVNHIRRFLDSLNCYLCRLLHILFHCSH 470 + ++ +R +D L+CYL LLH ++ H Sbjct: 883 DLLSRLRHRVDHLDCYLRCLLHGVYRIEH 797 Score = 50.1 bits (103), Expect(3) = 2e-07 Identities = 22/42 (52%), Positives = 29/42 (69%) Frame = +2 / +2 Query: 92 NIMAILMSCVTSKMLAPCIPVVSRQQRDTCISVSAHRRQIRI 217 N MA+L S V K LA C P ++++ R+T +S SAHRRQI I Sbjct: 125 NPMAVLKSLVACKGLALCAPAIAQRHRNTPLSASAHRRQILI 250 Score = 26.3 bits (51), Expect(3) = 2e-07 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = +1 / +2 Query: 286 NCCSWFRFWRIARRKIPITQ 345 N CSWF RRK P TQ Sbjct: 467 NPCSWFWSSSTVRRKSPSTQ 526 Score = 23.1 bits (44), Expect(3) = 2e-07 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +2 / +2 Query: 572 AFPGNENL 595 AFPGNENL Sbjct: 902 AFPGNENL 925 Score = 36.8 bits (74), Expect(2) = 5e-05 Identities = 20/42 (47%), Positives = 22/42 (52%) Frame = -3 / -1 Query: 216 IRICRR*ADTEIHVSRCCRETTGMHGANILDVTHDMRIAMIF 91 IRICRR*AD + V R G H A L T D+ AM F Sbjct: 249 IRICRR*ADADNGVFR*R*AIAGAHSAKPLQATRDLSTAMGF 124 Score = 34.5 bits (69), Expect(2) = 5e-05 Identities = 18/42 (42%), Positives = 20/42 (47%) Frame = -3 / -1 Query: 696 S*AVNRTLWIRXXXXXXXXXXXXXXALILKAAFLRFSLPGNA 571 +*A T WIR LIL+A LRFSLPG A Sbjct: 1026 N*ATGLTFWIRASAFSASSSITSATVLILEATSLRFSLPGKA 901 Score = 46.0 bits (94), Expect = 4e-04 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 / +1 Query: 91 KYHGDPHVMCYIQNVGAMHPSGFSATTGHMYFCISSSSANPNRLSHEVL 237 K HG + C +Q +GA+ S SA+ H CI SS ANP+ ++ L Sbjct: 124 KSHGGAQISCCLQRLGAVRSSDCSASPEHAVICIGSSPANPDHRLNDEL 270 Score = 40.5 bits (82), Expect = 0.017 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = +3 / +3 Query: 84 SL*ISWRSSCHVLHPKCWRHASQWFLGNNGTHVFLYQLIVGKS 212 +L I WR S +L K WR A Q L GT +L++LI GKS Sbjct: 117 TLQIPWRCSNLLLLAKAWRCALQRLLSVTGTRRYLHRLIAGKS 245
>LOC_Os10g37690:12010.t03029:unspliced-genomic inner membrane protein OXA1, mitochondrial precursor, putative,| expressed Length = 4941 Score = 39.6 bits (80), Expect = 0.032 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -2 / -1 Query: 520 LNCYLCRLLHILFHCSHLSIKRYCSKDATNDHRDQ*RFVGC*GFSW 383 LNCY+C +L H S K Y K H +Q F C F+W Sbjct: 777 LNCYVCICKALLLHTVKTSSKHYGYKHVAESH*EQLTFSFCVAFNW 640
>LOC_Os04g28320:12004.t02530:unspliced-genomic hypothetical protein| Length = 204 Score = 27.2 bits (53), Expect(2) = 0.34 Identities = 7/9 (77%), Positives = 8/9 (88%) Frame = +1 / +2 Query: 427 GRWWRLWSS 453 GRWWR WS+ Sbjct: 140 GRWWRCWSA 166 Score = 25.8 bits (50), Expect(2) = 0.34 Identities = 9/27 (33%), Positives = 12/27 (44%) Frame = +3 / +2 Query: 93 ISWRSSCHVLHPKCWRHASQWFLGNNG 173 + W C + P CWR LG +G Sbjct: 32 LCWWWCCCCMSPACWRRRRGRCLGRSG 112
>LOC_Os09g09960:12009.t00788:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 4452 Score = 35.0 bits (70), Expect = 0.77 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 / -1 Query: 51 GIASTLKKLADSL*ISWRSSCHVLHPKCWRHASQW 155 G+AS++ K + +R+SC HP WR ASQ+ Sbjct: 2988 GLASSIAKNPRPTMLRFRASCMSTHPNPWREASQY 2884
>LOC_Os10g42320:12010.t03460:unspliced-genomic nonsense-mediated mRNA decay protein 3, putative, expressed| Length = 2498 Score = 34.5 bits (69), Expect = 1.1 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +1 / -1 Query: 73 S*LTPCKYHGDPHVMCYIQNVGAMHPSGFSATTGHMYFCISSSSANPNRLSHEVLGHQL 249 S*L PC +H H + Q G +G + +C S S P R H+ G ++ Sbjct: 1322 S*LCPCHHHSSWHHKDHTQGQGLQDSAGGQDESAR*TWCRFSQSRRPGRPGHKPTGSEI 1146
>LOC_Os03g50160:12003.t04360:unspliced-genomic chemocyanin precursor, putative, expressed| Length = 1891 Score = 34.5 bits (69), Expect = 1.1 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +1 / +3 Query: 205 ANPNRLSHEVLGHQLYRSADADKRNDTNCCSWFRFWRIAR 324 A P SH + H L+ A+ + NCC +WR R Sbjct: 3 ALPPLASHSLAQHYLHPLAEISSKRSVNCCKAISYWRWLR 122
>LOC_Os12g43564:12012.t04025:unspliced-genomic conserved hypothetical protein| Length = 2281 Score = 33.6 bits (67), Expect = 2.0 Identities = 23/93 (24%), Positives = 34/93 (36%) Frame = +2 / -2 Query: 140 PCIPVVSRQQRDTCISVSAHRRQIRIGLAMKSWGTSCTVPPMRIRGTTRIAAVGSDSGEL 319 P +P R++R + S R R G + WGT PP A G Sbjct: 1641 PPLPSPHRRRRRRTAAASCRRPPSRSGREARIWGTLPPPPPRSTAPLPPQAHTGPPPPSS 1462 Query: 320 REEKSPLPNKAAAISSDPGELPGKSSASNKSSL 418 R P P + + P LP ++A ++ L Sbjct: 1461 RPRPVPSPLPSPSPPPSPFPLPSAAAA*RRAPL 1363
>LOC_Os06g14620:12006.t01337:unspliced-genomic ribonucleoside-diphosphate reductase small chain, putative,| expressed Length = 1651 Score = 33.6 bits (67), Expect = 2.0 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -3 / -3 Query: 384 GNSPGSELIAAALLGNGDFSSRNSPESEPTAAIRVVPLIRIGGTVQLV 241 G+ PG E++ +G G+ E R VP+ R+GG V L+ Sbjct: 359 GHEPGGEVLEHDAVGGGEEGEHVGDEVALVGGQRGVPVARVGGEVHLL 216 Score = 32.7 bits (65), Expect = 3.8 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +2 / +1 Query: 251 TVPPMRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISSDPGELP 385 T PP R GT R + S SP P + + +S PG P Sbjct: 226 TSPPTRATGTPRCPPTSATSSPTCSPSSPPPTASCSRTSPPGSCP 360
>LOC_Os05g49270:12005.t04360:unspliced-genomic solute carrier family 2, facilitated glucose transporter member 8,| putative, expressed Length = 4604 Score = 33.6 bits (67), Expect = 2.0 Identities = 18/54 (33%), Positives = 25/54 (46%) Frame = +2 / +3 Query: 245 SCTVPPMRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISSDPGELPGKSSASN 406 S T PP R ++R A SDS + P+ + S P LP SS+S+ Sbjct: 339 SPTSPPSSARSSSRSAPSSSDSRGASPPRRRTPSSETSTSPSPRLLPASSSSSS 500
>LOC_Os04g47870:12004.t04309:unspliced-genomic PINHEAD protein, putative, expressed| Length = 15105 Score = 28.1 bits (55), Expect(2) = 2.4 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 / -1 Query: 110 MSCVTSKMLAPCIPVVSRQQRDTCIS 187 +SCV ++PC+P R Q + C S Sbjct: 5277 LSCV*IGSVSPCVPYAPRDQPEPCRS 5200 Score = 22.1 bits (42), Expect(2) = 2.4 Identities = 7/21 (33%), Positives = 9/21 (42%) Frame = +2 / -3 Query: 188 VSAHRRQIRIGLAMKSWGTSC 250 + + R GLA WG C Sbjct: 5179 IQCRHQNPRAGLAEHGWGNGC 5117
>LOC_Os11g01190:12011.t00019:unspliced-genomic expressed protein| Length = 6829 Score = 33.1 bits (66), Expect = 2.7 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +1 / +1 Query: 442 LWSSIFLWTDESNGRECGEDGRDSN*DYRESGGCG 546 L+ F W + +G ECG++ D + G CG Sbjct: 1045 LYLCFF*WKQDGSGEECGQETEDPKGQVKGRGNCG 1149
>LOC_Os08g37874:12008.t03523:unspliced-genomic oxidoreductase, putative, expressed| Length = 8492 Score = 33.1 bits (66), Expect = 2.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -2 / -1 Query: 610 EGCLLKVFITGKCYDFVC 557 EGC KVF +G CY F+C Sbjct: 1991 EGCYKKVFCSGACYIFLC 1938
>LOC_Os01g46590:12001.t04107:unspliced-genomic expressed protein| Length = 4591 Score = 33.1 bits (66), Expect = 2.7 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 / +3 Query: 318 CEKKNPHYPTRRLQLVRTLGNYQENPQHPTNL 413 C+ KN HY T + L+ L E P HP NL Sbjct: 1413 CQLKNVHYLTYIMNLLTLLLKSLEQPAHPINL 1508
>LOC_Os12g42130:12012.t03887:unspliced-genomic transparent testa 12 protein, putative, expressed| Length = 2553 Score = 32.7 bits (65), Expect = 3.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +3 / +2 Query: 342 PTRRLQLVRTLGNYQENPQHPTNLHWS 422 PT+RL L+R+L P P + HWS Sbjct: 1145 PTQRLHLIRSLSGMPPTPCLPHDTHWS 1225
>LOC_Os04g35490:12004.t03219:unspliced-genomic expressed protein| Length = 2072 Score = 24.9 bits (48), Expect(2) = 5.0 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -2 / -1 Query: 280 RSSYPHRRNGTAGAP 236 R+S RR GTAGAP Sbjct: 266 RASPSRRRRGTAGAP 222 Score = 24.4 bits (47), Expect(2) = 5.0 Identities = 9/20 (45%), Positives = 11/20 (55%) Frame = -1 / -1 Query: 254 RYSWCPKTSWLSRFGFADDE 195 R W P++SW R A DE Sbjct: 104 RARWPPRSSWRERHAVALDE 45
>LOC_Os09g28050:12009.t02483:unspliced-genomic asparate aminotransferase, putative, expressed| Length = 3981 Score = 32.2 bits (64), Expect = 5.2 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = +2 / -1 Query: 200 RRQIRIGLAMKSWGTSCTVPPMRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISS 367 RR R + WG + PP R G TR A+ G+ G R + L AA S Sbjct: 291 RRSRRRRWTRRPWGRAPRPPPARPSGATRRASGGARRGGRRRRRRDLTASHAASRS 124
>LOC_Os08g29550:12008.t02710:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 1724 Score = 32.2 bits (64), Expect = 5.2 Identities = 10/33 (30%), Positives = 21/33 (63%) Frame = +2 / +2 Query: 152 VVSRQQRDTCISVSAHRRQIRIGLAMKSWGTSC 250 +++ +Q TC+ AHRR++ + + S G++C Sbjct: 488 ILTSRQFYTCLKTRAHRRRVHHAMCLLSMGSAC 586
>LOC_Os05g32230:12005.t02819:unspliced-genomic expressed protein| Length = 5666 Score = 32.2 bits (64), Expect = 5.2 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = +1 / -1 Query: 418 GHGGRWWRLWSSIFLW 465 G GG WWR W+ ++ W Sbjct: 92 GGGGWWWRAWTGVWWW 45
>LOC_Os09g39160:12009.t03382:unspliced-genomic thiol protease SEN102 precursor, putative, expressed| Length = 2139 Score = 31.8 bits (63), Expect = 7.1 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +2 / +2 Query: 239 GTSCTVPPMRIRGTTRIAAVGS 304 G +CT PP R RGT+ VGS Sbjct: 86 GATCTAPPRRRRGTSPTRGVGS 151
>LOC_Os02g12350:12002.t01033:unspliced-genomic histone deacetylase, putative, expressed| Length = 6066 Score = 31.8 bits (63), Expect = 7.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 / +1 Query: 320 REEKSPLPNKAAAISSDPGELPGKSSASNKS 412 REEK+P PN AAA ++ P + A S Sbjct: 73 REEKNPTPNSAAAAEAEAAMDPSSAGAGGNS 165
>LOC_Os01g26250:12001.t02331:unspliced-genomic conserved hypothetical protein| Length = 1459 Score = 31.8 bits (63), Expect = 7.1 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +1 / +1 Query: 451 SIFLWTDESNGRECGEDGRDS 513 S++L++ + +GR CGE+GR + Sbjct: 1297 SLYLFSQDGDGRRCGEEGRQA 1359
>LOC_Os06g37150:12006.t03410:unspliced-genomic L-ascorbate oxidase precursor, putative, expressed| Length = 5470 Score = 29.9 bits (59), Expect(2) = 8.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +2 / -1 Query: 236 WGTSCTVPPMRIRGTTRIAAVGSDSGEL 319 W T+ T PP R R T +A V +G L Sbjct: 3328 WSTTSTTPPCRSRNTLSLAVVALFAGGL 3245 Score = 24.0 bits (46), Expect(2) = 8.2 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = +3 / -2 Query: 81 DSL*ISWRSSCHVLHPKC 134 D L +SW + C + PKC Sbjct: 5010 DCLYVSWYNLCTLFLPKC 4957
>LOC_Os12g13120:12012.t01180:unspliced-genomic histidine triad family protein, putative, expressed| Length = 7744 Score = 31.3 bits (62), Expect = 9.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 / -3 Query: 394 LSIQQIFIGHGGRWWRLWSSIF 459 L +++IF G WWR WS +F Sbjct: 7079 LFLRRIFFRRGVLWWRNWSELF 7014
>LOC_Os12g01190:12012.t00018:unspliced-genomic RNA recognition motif family protein, expressed| Length = 6714 Score = 31.3 bits (62), Expect = 9.7 Identities = 10/35 (28%), Positives = 17/35 (48%) Frame = +1 / +3 Query: 442 LWSSIFLWTDESNGRECGEDGRDSN*DYRESGGCG 546 L+ F W + +G +CG++ D + G CG Sbjct: 990 LYLCFF*WKQDGSGEKCGQETEDPKGQVKGRGNCG 1094
>LOC_Os11g39920:12011.t03534:unspliced-genomic expressed protein| Length = 3825 Score = 31.3 bits (62), Expect = 9.7 Identities = 10/25 (40%), Positives = 11/25 (44%) Frame = +1 / +3 Query: 433 WWRLWSSIFLWTDESNGRECGEDGR 507 WW W S W S RE G G+ Sbjct: 1848 WWLPWCSCSCWEQSSTAREYGRSGQ 1922
>LOC_Os11g35120:12011.t03061:unspliced-genomic OsWAK116 - OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK)| Length = 2040 Score = 31.3 bits (62), Expect = 9.7 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 / -1 Query: 78 LTSSTLKLYLHQRCLWPSTLFVANFP 1 LTS LK + H R WPS F A+ P Sbjct: 1977 LTSEQLKAFCHFRHCWPSIFFRAHTP 1900
>LOC_Os04g58070:12004.t05270:unspliced-genomic aspartic proteinase nepenthesin-2 precursor, putative, expressed| Length = 1867 Score = 31.3 bits (62), Expect = 9.7 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +2 / -3 Query: 233 SWGTSCTVPPMRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISSD 370 S G CT TTR +VG + R + SPLP+ +SD Sbjct: 485 SQGRHCTQMTSLPESTTRY*SVGGEPTPTRTKYSPLPSSTPGTTSD 348
>LOC_Os03g51920:12003.t04520:unspliced-genomic peptidase, M50 family, putative, expressed| Length = 2400 Score = 31.3 bits (62), Expect = 9.7 Identities = 17/60 (28%), Positives = 25/60 (41%) Frame = +2 / +2 Query: 233 SWGTSCTVPPMRIRGTTRIAAVGSDSGELREEKSPLPNKAAAISSDPGELPGKSSASNKS 412 SWGT + PP R + + S + +SP + A+ +S P G SS S Sbjct: 455 SWGTRPSRPPSSWRRSAPTGSSASSTASPTPTRSPASSAASLGASSPARRRGSSSPRTPS 634
>LOC_Os11g29014:12011.t02511:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4888 Score = 27.6 bits (54), Expect(2) = 9.9 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +3 / -1 Query: 99 WRSSCHVLHPKC 134 WRS CHV P+C Sbjct: 4402 WRS*CHVTEPRC 4367 Score = 25.8 bits (50), Expect(2) = 9.9 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = +1 / -1 Query: 172 GHMYFCISSSSANPNRLSHEVLG 240 GH+ F + S N LSH +LG Sbjct: 3532 GHLRFAFALLSLRHNSLSHRLLG 3464 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 347,308,581 Number of extensions: 5677868 Number of successful extensions: 25322 Number of sequences better than 10.0: 29 Length of query: 294 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 245 Effective length of database: 52,856,264 Effective search space: 12949784680 Effective search space used: 12949784680 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)