ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT835041.1| Oryza sativa (indica cultivar-group) cDNA clone:... 52 0.003
2emb|CT837754.1| Oryza sativa (indica cultivar-group) cDNA clone:... 52 0.003
3emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clon... 52 0.003
4dbj|AK242262.1| Oryza sativa (japonica cultivar-group) cDNA, clo... 52 0.003
5ref|NM_001059476.1| Oryza sativa (japonica cultivar-group) Os04g... 52 0.003
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
7emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4,... 52 0.003
8gb|AC123829.2| Mus musculus BAC clone RP24-117E16 from 2, comple... 48 0.054
9emb|CT028522.1| Poplar cDNA sequences 46 0.21
10emb|CT028521.1| Poplar cDNA sequences 46 0.21
11emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in ... 46 0.21
12gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, com... 42 3.3
13gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosom... 42 3.3
14gb|AC147678.5| Canis Familiaris, clone XX-25C7, complete sequence 42 3.3
15gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, comp... 42 3.3
16gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosom... 42 3.3
17gb|AC093432.2| Homo sapiens chromosome 1 clone RP11-136D19, comp... 42 3.3
18dbj|AK049498.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 42 3.3
19gb|AC104059.5| Homo sapiens BAC clone RP13-514E23 from 4, comple... 42 3.3
20emb|X61240.1|HIVTRENGE Huma Immunodeficiency Virus Isolate D205,... 42 3.3
21gb|AC173113.4| Mus musculus BAC clone RP23-120D6 from chromosome... 42 3.3
22emb|AL953893.17| Zebrafish DNA sequence from clone DKEY-60B12, c... 42 3.3 
>emb|CT835041.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121F24, full
           insert sequence
          Length = 965
 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 634 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
           ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 570 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 615
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>emb|CT837754.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA120A23, full
           insert sequence
          Length = 2014

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 634 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
           ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 555 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 600
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>emb|CR855170.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818E04, complete
              sequence
          Length = 146307

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                            
Query: 634    gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
              ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 101282 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 101327
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>dbj|AK242262.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075184M03, full
            insert sequence
          Length = 3272

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                          
Query: 634  gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
            ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 2819 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 2774
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>ref|NM_001059476.1| Oryza sativa (japonica cultivar-group) Os04g0450600 (Os04g0450600)
           mRNA, complete cds
          Length = 654

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 634 gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
           ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 537 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 582
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                              
Query: 634      gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
                ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 22423655 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 22423700
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>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14,
             complete sequence
          Length = 175698

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 634   gatagagaaagatgcagaggaagccgaggccctaatccacaaggtt 679
             ||||||| | ||||| ||| ||||||||||||||||||| ||||||
Sbjct: 27410 gatagaggatgatgccgagaaagccgaggccctaatccagaaggtt 27455
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>gb|AC123829.2| Mus musculus BAC clone RP24-117E16 from 2, complete sequence
          Length = 172335

 Score = 48.1 bits (24), Expect = 0.054
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 775   agaaaaagtgaaacaaaaggtaca 798
             ||||||||||||||||||||||||
Sbjct: 86846 agaaaaagtgaaacaaaaggtaca 86823
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>emb|CT028522.1| Poplar cDNA sequences
          Length = 597

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 631 agagatagagaaagatgcagagg 653
           |||||||||||||||||||||||
Sbjct: 172 agagatagagaaagatgcagagg 194
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>emb|CT028521.1| Poplar cDNA sequences
          Length = 595

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 631 agagatagagaaagatgcagagg 653
           |||||||||||||||||||||||
Sbjct: 426 agagatagagaaagatgcagagg 404
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>emb|BX682558.6| Zebrafish DNA sequence from clone DKEY-225F5 in linkage group 3, complete
              sequence
          Length = 146807

 Score = 46.1 bits (23), Expect = 0.21
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 440    gtctttggagcagtatctttttatgga 466
              |||||||| ||||||||||||||||||
Sbjct: 119318 gtctttggggcagtatctttttatgga 119292
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>gb|AC161225.14| Mus musculus chromosome 5, clone RP23-37G13, complete sequence
          Length = 165525

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 377   gaattaccaggaaaatcctca 397
             |||||||||||||||||||||
Sbjct: 58175 gaattaccaggaaaatcctca 58195
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>gb|AC140291.2| Mus musculus BAC clone RP24-326N12 from chromosome 5, complete sequence
          Length = 167269

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 377    gaattaccaggaaaatcctca 397
              |||||||||||||||||||||
Sbjct: 150593 gaattaccaggaaaatcctca 150613
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>gb|AC147678.5| Canis Familiaris, clone XX-25C7, complete sequence
          Length = 171041

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 481   ggaagagaatgtggagaagac 501
             |||||||||||||||||||||
Sbjct: 50834 ggaagagaatgtggagaagac 50854
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>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence
          Length = 270854

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 477   caatggaagagaatgtggaga 497
             |||||||||||||||||||||
Sbjct: 81139 caatggaagagaatgtggaga 81159
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>gb|AC158361.3| Mus musculus BAC clone RP23-227A12 from chromosome 3, complete sequence
          Length = 211804

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 778   aaaagtgaaacaaaaggtacaggaa 802
             ||||||||||||||||| |||||||
Sbjct: 52383 aaaagtgaaacaaaagggacaggaa 52407
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>gb|AC093432.2| Homo sapiens chromosome 1 clone RP11-136D19, complete sequence
          Length = 174520

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 719   ttttcattaagtgcatctttt 739
             |||||||||||||||||||||
Sbjct: 86673 ttttcattaagtgcatctttt 86653
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>dbj|AK049498.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:C430017K04
            product:unclassifiable, full insert sequence
          Length = 4142

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 477  caatggaagagaatgtggaga 497
            |||||||||||||||||||||
Sbjct: 2983 caatggaagagaatgtggaga 2963
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>gb|AC104059.5| Homo sapiens BAC clone RP13-514E23 from 4, complete sequence
          Length = 165223

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 769    gtttctagaaaaagtgaaaca 789
              |||||||||||||||||||||
Sbjct: 135455 gtttctagaaaaagtgaaaca 135435
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>emb|X61240.1|HIVTRENGE Huma Immunodeficiency Virus Isolate D205, complete genome
          Length = 10269

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                             
Query: 625  cgcagaagagatagagaaagatgcagaggaagc 657
            ||||||||||| || ||||||| ||||||||||
Sbjct: 1345 cgcagaagagaaagtgaaagatacagaggaagc 1377
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>gb|AC173113.4| Mus musculus BAC clone RP23-120D6 from chromosome 3, complete sequence
          Length = 172004

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 778    aaaagtgaaacaaaaggtacaggaa 802
              ||||||||||||||||| |||||||
Sbjct: 150711 aaaagtgaaacaaaagggacaggaa 150735
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>emb|AL953893.17| Zebrafish DNA sequence from clone DKEY-60B12, complete sequence
          Length = 216749

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 770   tttctagaaaaagtgaaacaa 790
             |||||||||||||||||||||
Sbjct: 25492 tttctagaaaaagtgaaacaa 25472


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 168,484,370
Number of extensions: 8705510
Number of successful extensions: 173247
Number of sequences better than 10.0: 22
Number of HSP's gapped: 173247
Number of HSP's successfully gapped: 22
Length of query: 884
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 862
Effective length of database: 18,508,616,841
Effective search space: 15954427716942
Effective search space used: 15954427716942
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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