ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf51b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os06g44144:12006.t04880:unspliced-genomic expressed protein 43 0.002
2LOC_Os12g12080:12012.t01078:unspliced-genomic retrotransposo... 35 0.49
3LOC_Os02g09930:12002.t00840:unspliced-genomic CSLA1 - cellul... 35 0.50
4LOC_Os11g32410:12011.t02837:unspliced-genomic expressed protein 33 1.8
5LOC_Os02g52380:12002.t04819:unspliced-genomic expressed protein 32 3.3
6LOC_Os08g04800:12008.t00374:unspliced-genomic triacylglycero... 31 4.5
7LOC_Os02g13480:12002.t01144:unspliced-genomic hypothetical p... 30 8.6

>LOC_Os06g44144:12006.t04880:unspliced-genomic expressed protein|
          Length = 537
 Score = 42.8 bits (87), Expect = 0.002
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +3 / +3

                                              
Query: 105 EMKAWASMADDPLKRXXXXXXXXXXXMRRVSPTTM 209
           +M+AWASMA+DPLKR           +RR SP T+
Sbjct: 87  KMRAWASMAEDPLKRASAASSSSTSPLRRYSPATL 191



 Score = 32.2 bits (64), Expect = 2.4
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +2 / +2

                           
Query: 107 DEGVGLHGRRPAEACV 154
           DEG+G+HGR PAEA V
Sbjct: 89  DEGLGIHGRGPAEARV 136



 Score = 31.3 bits (62), Expect = 4.5
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = -3 / -3

                           
Query: 154 DARFSGSSAMEAHAFI 107
           DARFSGSSAM+A A I
Sbjct: 136 DARFSGSSAMDAQALI 89



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>LOC_Os12g12080:12012.t01078:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed|
          Length = 13894

 Score = 34.5 bits (69), Expect = 0.49
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2 / +3

                                            
Query: 47   RSWQLEQREEEESVVDHVAGDEGVGLHGRRPA 142
            RSW+ E+R+EE   +       GVG   RRPA
Sbjct: 9555 RSWEREERKEERGFLTEAMAVTGVGRDERRPA 9650



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>LOC_Os02g09930:12002.t00840:unspliced-genomic CSLA1 - cellulose synthase-like family A; mannan synthase,|
           expressed
          Length = 7135

 Score = 34.5 bits (69), Expect = 0.50
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1 / +3

                                          
Query: 349 R*PRHSNNKTPLPPAAYGV*IVCVLCFCTLF 441
           R P  ++ + PLPPAA      C+LCF +LF
Sbjct: 441 RSPCSTSARYPLPPAAIAATFPCLLCFLSLF 533



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>LOC_Os11g32410:12011.t02837:unspliced-genomic expressed protein|
          Length = 3366

 Score = 32.7 bits (65), Expect = 1.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3 / -2

                                            
Query: 381 PPSCCVRCVNRVCALFLYSFYQWNMERFYRTKK 479
           P   C   +N+   + L S YQW+ + FY TKK
Sbjct: 950 PQILCNTRLNKTICILLLSDYQWHHQIFYCTKK 852



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>LOC_Os02g52380:12002.t04819:unspliced-genomic expressed protein|
          Length = 1623

 Score = 31.8 bits (63), Expect = 3.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2 / -1

                                             
Query: 38  KLGRSWQLEQREEEESVVDHVAGDEGVGLHGRRP 139
           ++GR W+  +R +E   V  V G+E VG   R P
Sbjct: 198 RVGRRWRRHRRGQERVGVHGVGGEERVGASRRHP 97



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>LOC_Os08g04800:12008.t00374:unspliced-genomic triacylglycerol lipase like protein, putative, expressed|
          Length = 1722

 Score = 31.3 bits (62), Expect = 4.5
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2 / -1

                                          
Query: 80   ESVVDHVAGDEGVGLHGRRPAEACVVVGDE 169
            E  V H    EG   HGRR AEA  +VGD+
Sbjct: 1107 ERAVAHAWATEGEHGHGRRRAEAGELVGDQ 1018



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>LOC_Os02g13480:12002.t01144:unspliced-genomic hypothetical protein|
          Length = 836

 Score = 30.4 bits (60), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2 / +3

                                              
Query: 35  RKLGRSWQLEQREEEESVVDHVAGDEGVGLHGRRP 139
           R + R WQ+++     + V  V+ D GVG + R+P
Sbjct: 267 RSIRRDWQIQRWARPTNPVVAVSDDSGVGRNRRKP 371


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 128,334,431
Number of extensions: 1525440
Number of successful extensions: 5919
Number of sequences better than 10.0: 7
Length of query: 162
Length of database: 55,613,886
Length adjustment: 47
Effective length of query: 115
Effective length of database: 52,968,820
Effective search space: 6091414300
Effective search space used: 6091414300
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
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