| Clone Name | FLbaf51b18 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g44144:12006.t04880:unspliced-genomic expressed protein| Length = 537 Score = 42.8 bits (87), Expect = 0.002 Identities = 17/35 (48%), Positives = 22/35 (62%) Frame = +3 / +3 Query: 105 EMKAWASMADDPLKRXXXXXXXXXXXMRRVSPTTM 209 +M+AWASMA+DPLKR +RR SP T+ Sbjct: 87 KMRAWASMAEDPLKRASAASSSSTSPLRRYSPATL 191 Score = 32.2 bits (64), Expect = 2.4 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +2 / +2 Query: 107 DEGVGLHGRRPAEACV 154 DEG+G+HGR PAEA V Sbjct: 89 DEGLGIHGRGPAEARV 136 Score = 31.3 bits (62), Expect = 4.5 Identities = 13/16 (81%), Positives = 14/16 (87%) Frame = -3 / -3 Query: 154 DARFSGSSAMEAHAFI 107 DARFSGSSAM+A A I Sbjct: 136 DARFSGSSAMDAQALI 89
>LOC_Os12g12080:12012.t01078:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass, expressed| Length = 13894 Score = 34.5 bits (69), Expect = 0.49 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +2 / +3 Query: 47 RSWQLEQREEEESVVDHVAGDEGVGLHGRRPA 142 RSW+ E+R+EE + GVG RRPA Sbjct: 9555 RSWEREERKEERGFLTEAMAVTGVGRDERRPA 9650
>LOC_Os02g09930:12002.t00840:unspliced-genomic CSLA1 - cellulose synthase-like family A; mannan synthase,| expressed Length = 7135 Score = 34.5 bits (69), Expect = 0.50 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 / +3 Query: 349 R*PRHSNNKTPLPPAAYGV*IVCVLCFCTLF 441 R P ++ + PLPPAA C+LCF +LF Sbjct: 441 RSPCSTSARYPLPPAAIAATFPCLLCFLSLF 533
>LOC_Os11g32410:12011.t02837:unspliced-genomic expressed protein| Length = 3366 Score = 32.7 bits (65), Expect = 1.8 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 / -2 Query: 381 PPSCCVRCVNRVCALFLYSFYQWNMERFYRTKK 479 P C +N+ + L S YQW+ + FY TKK Sbjct: 950 PQILCNTRLNKTICILLLSDYQWHHQIFYCTKK 852
>LOC_Os02g52380:12002.t04819:unspliced-genomic expressed protein| Length = 1623 Score = 31.8 bits (63), Expect = 3.3 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +2 / -1 Query: 38 KLGRSWQLEQREEEESVVDHVAGDEGVGLHGRRP 139 ++GR W+ +R +E V V G+E VG R P Sbjct: 198 RVGRRWRRHRRGQERVGVHGVGGEERVGASRRHP 97
>LOC_Os08g04800:12008.t00374:unspliced-genomic triacylglycerol lipase like protein, putative, expressed| Length = 1722 Score = 31.3 bits (62), Expect = 4.5 Identities = 15/30 (50%), Positives = 17/30 (56%) Frame = +2 / -1 Query: 80 ESVVDHVAGDEGVGLHGRRPAEACVVVGDE 169 E V H EG HGRR AEA +VGD+ Sbjct: 1107 ERAVAHAWATEGEHGHGRRRAEAGELVGDQ 1018
>LOC_Os02g13480:12002.t01144:unspliced-genomic hypothetical protein| Length = 836 Score = 30.4 bits (60), Expect = 8.6 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 / +3 Query: 35 RKLGRSWQLEQREEEESVVDHVAGDEGVGLHGRRP 139 R + R WQ+++ + V V+ D GVG + R+P Sbjct: 267 RSIRRDWQIQRWARPTNPVVAVSDDSGVGRNRRKP 371 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 128,334,431 Number of extensions: 1525440 Number of successful extensions: 5919 Number of sequences better than 10.0: 7 Length of query: 162 Length of database: 55,613,886 Length adjustment: 47 Effective length of query: 115 Effective length of database: 52,968,820 Effective search space: 6091414300 Effective search space used: 6091414300 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)