ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51b06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY693800.1| Triticum aestivum clone WHE3002_C07_E14 CENP-C mRNA, partial cds Length = 1046 Score = 932 bits (470), Expect = 0.0 Identities = 646/704 (91%), Gaps = 3/704 (0%) Strand = Plus / Plus Query: 1775 caagaagcagtcagcaaagagaggaaaacgaatttcagataagccaatccatacatcaga 1834 ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||| Sbjct: 43 caagaagcagtcagcaaagagagaaaaaagagtttcagataagccaatccatacatcaga 102 Query: 1835 aatacctccagaagatactgtcccacagaatcaatctcatattcatgaaggaaacttcga 1894 ||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||| Sbjct: 103 aatacctccagaagatattgtcccacagaataactctcatgttcatgaaggaaacttcga 162 Query: 1895 gaaacctgcagttggtacaagcaatgaactctccctgagcaaagataataagcaaaagcg 1954 |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| Sbjct: 163 gaaacctgcagttggtacaagcaatggactctccccaagcaaagatagtaagcaaaagcg 222 Query: 1955 agttcgaaatgacgagtctaagaagcagccattgaagagaatgaaaagaggggcaga--- 2011 ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 agttcaaaatgaggagtctaagaagcagccattgaagagaatgaaaagaggggcagaaga 282 Query: 2012 gacaagcaatccgttgggaatacccctgaaaaattgtgatacagagactcaaattcgtat 2071 | |||||||||| ||||||||||||| | ||||||||||||||||||||||| | |||| Sbjct: 283 ggcaagcaatccattgggaatacccccggaaaattgtgatacagagactcaacctagtat 342 Query: 2072 gcaagatacaaatatcgagcagcagacagttgatactagggctccacggtccccaaacaa 2131 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct: 343 gcaagatacaaatatcgagcagcagacagttgatacaagggttccacggtccccaaacaa 402 Query: 2132 aggtagattgcaaaaggaaggtcaaaggagaaagaagaggcaagaagggaatagaaggaa 2191 ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 403 aggtaaattgcaaaaggaaggtcaaaggagaaagaagaggaaagaagtgaatagaaggaa 462 Query: 2192 cagcctggcagcatttggtcttgcatggcaatctggcgtgagacgcagcacaagaatacg 2251 |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 463 aagcctgacagcatttggtcttgcgtggcaatctggcgtgagacgcagcacaagaatacg 522 Query: 2252 gaccaggccattgagggagtggcttggcgaaagactcctatatgggcgtatacatgatac 2311 | ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||| || Sbjct: 523 gtccaggccattgcaggattggcttggcgaaaggctcctatatgggcgtatacatgacac 582 Query: 2312 aatggtgtcaatcatcggcgttaaatcatattctcccagtgaagacggcaagattgaatt 2371 ||||| || |||||||||| |||||||||||||||||| |||| |||||| ||||||| Sbjct: 583 aatggccacagtcatcggcgtgaaatcatattctcccagtcaagatggcaaggttgaatt 642 Query: 2372 gaaagtgaaatccttcgtgccagaagaatactcagctatggtagctaaagtcgcacagca 2431 || |||||||||||||||||||||| | ||||||| |||||||||| ||| ||| || | Sbjct: 643 gagagtgaaatccttcgtgccagaacagtactcagatatggtagctcaagctgcaaagta 702 Query: 2432 ttgaggttactggccgtgacaagtctcacattgttctgggacaa 2475 ||||||||||||||| |||||||||||| |||||| ||||||| Sbjct: 703 ttgaggttactggcctggacaagtctcactttgttccgggacaa 746 Score = 172 bits (87), Expect = 4e-39 Identities = 111/119 (93%) Strand = Plus / Plus Query: 2625 atgtagtaatagagatacaagaatgatcttcacctttgttagctgtttttagtgtcatct 2684 |||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||| Sbjct: 878 atgtagtagtagagacagaagaattatcttcacctttgttagctgtttttagtgtcatct 937 Query: 2685 ctggatgatatgatgtcaattggctctagtttatatatgcaggaagtctcttgtggtat 2743 |||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| |||| Sbjct: 938 ctggatgatatgatgtcaattgtctctagtttgtatatgcaggaagtcccttgtcgtat 996 Score = 133 bits (67), Expect = 4e-27 Identities = 79/83 (95%) Strand = Plus / Plus Query: 2520 ggtagcatttcaggtgctttatcatgctctgccatctatctttctaaaagagacttgcac 2579 |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct: 770 ggtagcctttcaggtgctttctcatgctctgccatctatctttctaaaagagatttgcac 829 Query: 2580 aatgtagtgcaatcatgctgtta 2602 |||||||||||| |||||||||| Sbjct: 830 aatgtagtgcaaccatgctgtta 852
>gb|AY693779.1| Hordeum vulgare subsp. vulgare clone bar9q10q CENP-C gene, exons 9q, 10q and partial cds Length = 353 Score = 228 bits (115), Expect = 9e-56 Identities = 118/119 (99%) Strand = Plus / Plus Query: 1889 cttcgagaaacctgcagttggtacaagcaatgaactctccctgagcaaagataataagca 1948 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 cttccagaaacctgcagttggtacaagcaatgaactctccctgagcaaagataataagca 294 Query: 1949 aaagcgagttcgaaatgacgagtctaagaagcagccattgaagagaatgaaaagagggg 2007 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 aaagcgagttcgaaatgacgagtctaagaagcagccattgaagagaatgaaaagagggg 353 Score = 157 bits (79), Expect = 3e-34 Identities = 79/79 (100%) Strand = Plus / Plus Query: 1813 ataagccaatccatacatcagaaatacctccagaagatactgtcccacagaatcaatctc 1872 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataagccaatccatacatcagaaatacctccagaagatactgtcccacagaatcaatctc 60 Query: 1873 atattcatgaaggaaactt 1891 ||||||||||||||||||| Sbjct: 61 atattcatgaaggaaactt 79
>gb|AY693780.1| Hordeum vulgare subsp. vulgare clone bar9p10p (repeat 1) CENP-C gene, exons 9p, 10p and partial cds Length = 569 Score = 161 bits (81), Expect = 2e-35 Identities = 105/117 (89%) Strand = Plus / Plus Query: 1696 agaaacaggcagttgatataagccatgaactccctctgagcaaagatggtaggcaaaatg 1755 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 agaaacaggcagttgatataagccatgaactccctctgagcaaagatggtaggcaaaatg 512 Query: 1756 cagtcccnnnnnnnnnnnncaagaagcagtcagcaaagagaggaaaacgaatttcag 1812 ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 513 cagtcccaaaaagaaaaaacaagaagcagtcagcaaagagaggaaaacgaatttcag 569 Score = 111 bits (56), Expect = 1e-20 Identities = 56/56 (100%) Strand = Plus / Plus Query: 1642 cggaaatacctccagatgcgcataatcagtctcatattcaggatgaagatgttgag 1697 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cggaaatacctccagatgcgcataatcagtctcatattcaggatgaagatgttgag 56
>gb|AY693803.1| Triticum aestivum clone whe9q10q (repeat 2) CENP-C gene, exons 9q, 10q and partial cds Length = 330 Score = 149 bits (75), Expect = 6e-32 Identities = 93/99 (93%) Strand = Plus / Plus Query: 1887 aacttcgagaaacctgcagttggtacaagcaatgaactctccctgagcaaagataataag 1946 |||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct: 232 aacttccagaaacctgcagttggtacaagcaatgaactctccccaagcaaagatagtaag 291 Query: 1947 caaaagcgagttcgaaatgacgagtctaagaagcagcca 1985 ||||||||||||| |||||| |||||||||||||||||| Sbjct: 292 caaaagcgagttcaaaatgaggagtctaagaagcagcca 330 Score = 133 bits (67), Expect = 4e-27 Identities = 79/83 (95%) Strand = Plus / Plus Query: 1813 ataagccaatccatacatcagaaatacctccagaagatactgtcccacagaatcaatctc 1872 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| Sbjct: 1 ataagccaatccatacatcagaaatacctccagaagatattgtcccacagaataactctc 60 Query: 1873 atattcatgaaggaaacttcgag 1895 || |||||||||||||||||||| Sbjct: 61 atgttcatgaaggaaacttcgag 83
>gb|AY693802.1| Triticum aestivum clone whe9p10p (repeat 1) CENP-C gene, exons 9p, 10p and partial cds Length = 613 Score = 103 bits (52), Expect = 3e-18 Identities = 55/56 (98%) Strand = Plus / Plus Query: 1642 cggaaatacctccagatgcgcataatcagtctcatattcaggatgaagatgttgag 1697 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1 cggaaatacctccagatgcgcataatcagtctcatattcaggatgaaaatgttgag 56 Score = 99.6 bits (50), Expect = 5e-17 Identities = 62/66 (93%) Strand = Plus / Plus Query: 1696 agaaacaggcagttgatataagccatgaactccctctgagcaaagatggtaggcaaaatg 1755 |||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| Sbjct: 497 agaaacaggcagttgatataagccgtgaactccctccgagcaaaggtggtaagcaaaatg 556 Query: 1756 cagtcc 1761 |||||| Sbjct: 557 cagtcc 562 Score = 60.0 bits (30), Expect = 5e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 1775 caagaagcagtcagcaaagagaggaaaacgaatttcag 1812 |||||||||||||||||||||||||||| || |||||| Sbjct: 576 caagaagcagtcagcaaagagaggaaaaagagtttcag 613
>ref|NM_001050119.1| Oryza sativa (japonica cultivar-group) Os01g0617700 (Os01g0617700) mRNA, complete cds Length = 2893 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 1280 tgaggcctctactgcaagggagaccccaacttcaagcatcaaatttccagaccatgttct 1339 ||||| ||||||||||| ||||||||||| | | |||||||||| |||||| ||||| || Sbjct: 1188 tgagggctctactgcaatggagaccccaagtcctagcatcaaatctccagagcatgtgct 1247 Query: 1340 tgaa 1343 |||| Sbjct: 1248 tgaa 1251 Score = 52.0 bits (26), Expect = 0.011 Identities = 122/154 (79%) Strand = Plus / Plus Query: 1776 aagaagcagtcagcaaagagaggaaaacgaatttcagataagccaatccatacatcagaa 1835 ||||||||| || | |||||||||||| || ||||||| || ||||||||||||||| Sbjct: 1693 aagaagcagccatcgaagagaggaaaaagagagacagataatccgatccatacatcagaa 1752 Query: 1836 atacctccagaagatactgtcccacagaatcaatctcatattcatgaaggaaacttcgag 1895 | ||| ||| |||||| ||||||||||||||| | || ||| |||| | | ||| Sbjct: 1753 acacccccaatggatactaatccacagaatcaatctgaaatacatcgtggaagcattgag 1812 Query: 1896 aaacctgcagttggtacaagcaatgaactctccc 1929 |||| ||||||| || |||||||| |||||||| Sbjct: 1813 aaactggcagttgataaaagcaatgcactctccc 1846 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 2271 tggcttggcgaaagactcctatatgggcgtatacatgatacaatggtgtcaatcatcggc 2330 |||||||| |||||| | |||||||||||||||||| ||||||| || ||||||| Sbjct: 2404 tggcttggtgaaagatttatatatgggcgtatacatggaacaatggccacagtcatcggt 2463 Query: 2331 gttaaatcat 2340 |||||||||| Sbjct: 2464 gttaaatcat 2473 Score = 50.1 bits (25), Expect = 0.044 Identities = 49/57 (85%) Strand = Plus / Plus Query: 829 cttcaagttctagccaatgtgacatacgagatgtctcaacgagagaagattcatttg 885 ||||||| ||||||||| || |||| |||| ||||| |||||||||||||||||| Sbjct: 731 cttcaagatctagccaagatgctataccagatatctcagcgagagaagattcatttg 787 Score = 48.1 bits (24), Expect = 0.17 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1824 catacatcagaaatacctccagaagatactgtcccacagaatcaatct 1871 |||||| | ||||| ||||||||||||||| ||||||||||||||| Sbjct: 1969 catacaccggaaattcctccagaagatacttatccacagaatcaatct 2016 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1176 gcagatctttcagaagacgatgaatctgat 1205 |||||||||||| |||| |||||||||||| Sbjct: 1084 gcagatctttcaaaagatgatgaatctgat 1113
>gb|AY693783.1| Oryza sativa (japonica cultivar-group) clone C51663_1A CENP-C mRNA, partial cds Length = 1843 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 1280 tgaggcctctactgcaagggagaccccaacttcaagcatcaaatttccagaccatgttct 1339 ||||| ||||||||||| ||||||||||| | | |||||||||| |||||| ||||| || Sbjct: 94 tgagggctctactgcaatggagaccccaagtcctagcatcaaatctccagagcatgtgct 153 Query: 1340 tgaa 1343 |||| Sbjct: 154 tgaa 157 Score = 52.0 bits (26), Expect = 0.011 Identities = 122/154 (79%) Strand = Plus / Plus Query: 1776 aagaagcagtcagcaaagagaggaaaacgaatttcagataagccaatccatacatcagaa 1835 ||||||||| || | |||||||||||| || ||||||| || ||||||||||||||| Sbjct: 599 aagaagcagccatcgaagagaggaaaaagagagacagataatccgatccatacatcagaa 658 Query: 1836 atacctccagaagatactgtcccacagaatcaatctcatattcatgaaggaaacttcgag 1895 | ||| ||| |||||| ||||||||||||||| | || ||| |||| | | ||| Sbjct: 659 acacccccaatggatactaatccacagaatcaatctgaaatacatcgtggaagcattgag 718 Query: 1896 aaacctgcagttggtacaagcaatgaactctccc 1929 |||| ||||||| || |||||||| |||||||| Sbjct: 719 aaactggcagttgataaaagcaatgcactctccc 752 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 2271 tggcttggcgaaagactcctatatgggcgtatacatgatacaatggtgtcaatcatcggc 2330 |||||||| |||||| | |||||||||||||||||| ||||||| || ||||||| Sbjct: 1310 tggcttggtgaaagatttatatatgggcgtatacatggaacaatggccacagtcatcggt 1369 Query: 2331 gttaaatcat 2340 |||||||||| Sbjct: 1370 gttaaatcat 1379 Score = 48.1 bits (24), Expect = 0.17 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1824 catacatcagaaatacctccagaagatactgtcccacagaatcaatct 1871 |||||| | ||||| ||||||||||||||| ||||||||||||||| Sbjct: 875 catacaccggaaattcctccagaagatacttatccacagaatcaatct 922
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 1280 tgaggcctctactgcaagggagaccccaacttcaagcatcaaatttccagaccatgttct 1339 ||||| ||||||||||| ||||||||||| | | |||||||||| |||||| ||||| || Sbjct: 24557486 tgagggctctactgcaatggagaccccaagtcctagcatcaaatctccagagcatgtgct 24557545 Query: 1340 tgaa 1343 |||| Sbjct: 24557546 tgaa 24557549 Score = 48.1 bits (24), Expect = 0.17 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1824 catacatcagaaatacctccagaagatactgtcccacagaatcaatct 1871 |||||| | ||||| ||||||||||||||| ||||||||||||||| Sbjct: 24561649 catacaccggaaattcctccagaagatacttatccacagaatcaatct 24561696 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1176 gcagatctttcagaagacgatgaatctgat 1205 |||||||||||| |||| |||||||||||| Sbjct: 24557382 gcagatctttcaaaagatgatgaatctgat 24557411 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1810 cagataagccaatccatacatcagaaatacctccagaagatactgtcccacagaatcaat 1869 ||||||| || |||||||||||||||| ||| ||| |||||| ||||||||||||| Sbjct: 24560550 cagataatccgatccatacatcagaaacacccccaatggatactaatccacagaatcaat 24560609 Query: 1870 ct 1871 || Sbjct: 24560610 ct 24560611
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 1280 tgaggcctctactgcaagggagaccccaacttcaagcatcaaatttccagaccatgttct 1339 ||||| ||||||||||| ||||||||||| | | |||||||||| |||||| ||||| || Sbjct: 137870 tgagggctctactgcaatggagaccccaagtcctagcatcaaatctccagagcatgtgct 137929 Query: 1340 tgaa 1343 |||| Sbjct: 137930 tgaa 137933 Score = 48.1 bits (24), Expect = 0.17 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1824 catacatcagaaatacctccagaagatactgtcccacagaatcaatct 1871 |||||| | ||||| ||||||||||||||| ||||||||||||||| Sbjct: 142033 catacaccggaaattcctccagaagatacttatccacagaatcaatct 142080 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1176 gcagatctttcagaagacgatgaatctgat 1205 |||||||||||| |||| |||||||||||| Sbjct: 137766 gcagatctttcaaaagatgatgaatctgat 137795 Score = 44.1 bits (22), Expect = 2.7 Identities = 52/62 (83%) Strand = Plus / Plus Query: 1810 cagataagccaatccatacatcagaaatacctccagaagatactgtcccacagaatcaat 1869 ||||||| || |||||||||||||||| ||| ||| |||||| ||||||||||||| Sbjct: 140934 cagataatccgatccatacatcagaaacacccccaatggatactaatccacagaatcaat 140993 Query: 1870 ct 1871 || Sbjct: 140994 ct 140995
>dbj|AK073890.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075H13, full insert sequence Length = 2893 Score = 63.9 bits (32), Expect = 3e-06 Identities = 56/64 (87%) Strand = Plus / Plus Query: 1280 tgaggcctctactgcaagggagaccccaacttcaagcatcaaatttccagaccatgttct 1339 ||||| ||||||||||| ||||||||||| | | |||||||||| |||||| ||||| || Sbjct: 1188 tgagggctctactgcaatggagaccccaagtcctagcatcaaatctccagagcatgtgct 1247 Query: 1340 tgaa 1343 |||| Sbjct: 1248 tgaa 1251 Score = 52.0 bits (26), Expect = 0.011 Identities = 122/154 (79%) Strand = Plus / Plus Query: 1776 aagaagcagtcagcaaagagaggaaaacgaatttcagataagccaatccatacatcagaa 1835 ||||||||| || | |||||||||||| || ||||||| || ||||||||||||||| Sbjct: 1693 aagaagcagccatcgaagagaggaaaaagagagacagataatccgatccatacatcagaa 1752 Query: 1836 atacctccagaagatactgtcccacagaatcaatctcatattcatgaaggaaacttcgag 1895 | ||| ||| |||||| ||||||||||||||| | || ||| |||| | | ||| Sbjct: 1753 acacccccaatggatactaatccacagaatcaatctgaaatacatcgtggaagcattgag 1812 Query: 1896 aaacctgcagttggtacaagcaatgaactctccc 1929 |||| ||||||| || |||||||| |||||||| Sbjct: 1813 aaactggcagttgataaaagcaatgcactctccc 1846 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 2271 tggcttggcgaaagactcctatatgggcgtatacatgatacaatggtgtcaatcatcggc 2330 |||||||| |||||| | |||||||||||||||||| ||||||| || ||||||| Sbjct: 2404 tggcttggtgaaagatttatatatgggcgtatacatggaacaatggccacagtcatcggt 2463 Query: 2331 gttaaatcat 2340 |||||||||| Sbjct: 2464 gttaaatcat 2473 Score = 50.1 bits (25), Expect = 0.044 Identities = 49/57 (85%) Strand = Plus / Plus Query: 829 cttcaagttctagccaatgtgacatacgagatgtctcaacgagagaagattcatttg 885 ||||||| ||||||||| || |||| |||| ||||| |||||||||||||||||| Sbjct: 731 cttcaagatctagccaagatgctataccagatatctcagcgagagaagattcatttg 787 Score = 48.1 bits (24), Expect = 0.17 Identities = 42/48 (87%) Strand = Plus / Plus Query: 1824 catacatcagaaatacctccagaagatactgtcccacagaatcaatct 1871 |||||| | ||||| ||||||||||||||| ||||||||||||||| Sbjct: 1969 catacaccggaaattcctccagaagatacttatccacagaatcaatct 2016 Score = 44.1 bits (22), Expect = 2.7 Identities = 28/30 (93%) Strand = Plus / Plus Query: 1176 gcagatctttcagaagacgatgaatctgat 1205 |||||||||||| |||| |||||||||||| Sbjct: 1084 gcagatctttcaaaagatgatgaatctgat 1113
>gb|AY693789.1| Oryza sativa (japonica cultivar-group) clone S345W-D05 CENP-C mRNA, partial cds Length = 656 Score = 52.0 bits (26), Expect = 0.011 Identities = 59/70 (84%) Strand = Plus / Plus Query: 2271 tggcttggcgaaagactcctatatgggcgtatacatgatacaatggtgtcaatcatcggc 2330 |||||||| |||||| | |||||||||||||||||| ||||||| || ||||||| Sbjct: 192 tggcttggtgaaagatttatatatgggcgtatacatggaacaatggccacagtcatcggt 251 Query: 2331 gttaaatcat 2340 |||||||||| Sbjct: 252 gttaaatcat 261
>gb|AY693801.1| Triticum aestivum clone C05_O232_plate 15 CENP-C mRNA, partial cds Length = 806 Score = 50.1 bits (25), Expect = 0.044 Identities = 52/61 (85%) Strand = Plus / Plus Query: 2332 ttaaatcatattctcccagtgaagacggcaagattgaattgaaagtgaaatccttcgtgc 2391 ||||||||||||||| | ||||||| |||||| ||| | ||| |||| |||||||| ||| Sbjct: 502 ttaaatcatattctcgcggtgaagatggcaaggttgcactgagagtggaatccttcctgc 561 Query: 2392 c 2392 | Sbjct: 562 c 562 Score = 44.1 bits (22), Expect = 2.7 Identities = 34/38 (89%) Strand = Plus / Plus Query: 2140 tgcaaaaggaaggtcaaaggagaaagaagaggcaagaa 2177 |||||||| ||| ||||||||||| |||||||||||| Sbjct: 325 tgcaaaagcaagttcaaaggagaagcaagaggcaagaa 362
>ref|XM_001222267.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_06173) mRNA, complete cds Length = 1743 Score = 48.1 bits (24), Expect = 0.17 Identities = 24/24 (100%) Strand = Plus / Minus Query: 209 cgcagcctccgcatccccctccag 232 |||||||||||||||||||||||| Sbjct: 681 cgcagcctccgcatccccctccag 658
>ref|NM_144590.1| Homo sapiens ankyrin repeat domain 22 (ANKRD22), mRNA gb|BC021671.1| Homo sapiens ankyrin repeat domain 22, mRNA (cDNA clone MGC:22805 IMAGE:3682099), complete cds Length = 1135 Score = 46.1 bits (23), Expect = 0.68 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1828 catcagaaatacctccagaagat 1850 ||||||||||||||||||||||| Sbjct: 91 catcagaaatacctccagaagat 113
>emb|AL157394.15| Human DNA sequence from clone RP11-399O19 on chromosome 10 Contains the 5' end of a novel gene (MGC22805), a novel pseudogene (FLJ12598), the gene for a novel Mov34/MPN/PAD-1 family domain containing protein (KIAA1373 FLJ35627 FLJ33359), a novel gene (FLJ36021), the ACTA2 gene for actin alpha 2 smooth muscle aorta, the TNFRSF6 gene for tumor necrosis factor receptor superfamily member 6 and two CpG islands, complete sequence Length = 187313 Score = 46.1 bits (23), Expect = 0.68 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1828 catcagaaatacctccagaagat 1850 ||||||||||||||||||||||| Sbjct: 4991 catcagaaatacctccagaagat 4969
>dbj|AK233433.1| Sus scrofa mRNA, clone:LVRM10147G10, expressed in liver Length = 1854 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 208 ccgcagcctccgcatccccctc 229 |||||||||||||||||||||| Sbjct: 1135 ccgcagcctccgcatccccctc 1114
>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12, complete sequence Length = 166936 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 gggcacggccgccgccggcgca 126 |||||||||||||||||||||| Sbjct: 14021 gggcacggccgccgccggcgca 14042
>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome Length = 2679306 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 970 gagagaagttacagatcaaaga 991 |||||||||||||||||||||| Sbjct: 2658644 gagagaagttacagatcaaaga 2658623
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 105 gggcacggccgccgccggcgca 126 |||||||||||||||||||||| Sbjct: 6888763 gggcacggccgccgccggcgca 6888784
>ref|XM_645132.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (235.t00005) partial mRNA Length = 1653 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1197 gaatctgataattcttcagaaa 1218 |||||||||||||||||||||| Sbjct: 1117 gaatctgataattcttcagaaa 1138
>emb|AL583919.1|MLEPRTN3 Mycobacterium leprae strain TN complete genome; segment 3/10 Length = 312050 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2402 ctcagctatggtagctaaagtc 2423 |||||||||||||||||||||| Sbjct: 222221 ctcagctatggtagctaaagtc 222242
>dbj|AB015478.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15 Length = 81347 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2142 caaaaggaaggtcaaaggagaaagaa 2167 ||||||||| |||||||||||||||| Sbjct: 63970 caaaaggaatgtcaaaggagaaagaa 63945
>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173043 Score = 44.1 bits (22), Expect = 2.7 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2155 aaaggagaaagaagaggcaagaaggg 2180 ||||||||||||||||| |||||||| Sbjct: 148694 aaaggagaaagaagaggaaagaaggg 148669
>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome Length = 2519802 Score = 44.1 bits (22), Expect = 2.7 Identities = 22/22 (100%) Strand = Plus / Minus Query: 970 gagagaagttacagatcaaaga 991 |||||||||||||||||||||| Sbjct: 1446437 gagagaagttacagatcaaaga 1446416 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 521,234,986 Number of extensions: 28430459 Number of successful extensions: 315338 Number of sequences better than 10.0: 24 Number of HSP's gapped: 315329 Number of HSP's successfully gapped: 52 Length of query: 2787 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2764 Effective length of database: 18,503,978,556 Effective search space: 51144996728784 Effective search space used: 51144996728784 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
