ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51b05 |
|---|---|
| Clone Library Name | barley_pub |
>Q9N1A6:STP2_PANPA Nuclear transition protein 2 - Pan paniscus (Pygmy chimpanzee)| (Bonobo) Length = 133 Score = 38.5 bits (88), Expect = 0.070 Identities = 25/81 (30%), Positives = 38/81 (46%) Frame = -1 Query: 1220 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 1041 T+T++ PI S + TC+HHR T S C ++ + +S Q PA R+P Sbjct: 3 TKTHSLPITHTQLHSNSQPQSCTCTHHRQTFSQSCRQSHRGSRSRSSS---QSPASHRNP 59 Query: 1040 SHGDSAPSTQGQ*SRRPTGGP 978 + A S+ G S+ P P Sbjct: 60 T---GAHSSSGHQSQSPNTSP 77
>Q9N1A3:STP2_MACMU Nuclear transition protein 2 - Macaca mulatta (Rhesus macaque)| Length = 137 Score = 37.0 bits (84), Expect = 0.20 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 8/108 (7%) Frame = -1 Query: 1220 TRTNTTPI----LLCSEQKQSST-KEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPA 1056 T+T++ PI L + + QS T + TC+HHR T S C ++ Q + + Q PA Sbjct: 3 TKTHSLPITHTQLHSNSRPQSRTCSQCTCTHHRQTFSQSCRQS---QRGSRSRSSSQSPA 59 Query: 1055 PTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 921 ++P+ S+ Q Q P+++ P +K + PT+P Sbjct: 60 THQNPTGAHSSSGLQSQ-------SPNASPPPKRHKKTMNSHHSPTRP 100
>Q8WNV1:STP2_MACFA Nuclear transition protein 2 - Macaca fascicularis (Crab eating| macaque) (Cynomolgus monkey) Length = 141 Score = 36.6 bits (83), Expect = 0.26 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Frame = -1 Query: 1220 TRTNTTPIL---LCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPT 1050 T+T++ PI L S + S + TC+HH T S C ++ Q + + Q PA Sbjct: 3 TKTHSLPITHTQLHSNSRPQSRSQCTCTHHCQTFSQSCRQS---QRGSRSRSSSQSPATH 59 Query: 1049 RSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 921 ++P+ S+ Q Q P+++ P +K + PT+P Sbjct: 60 QNPTGAHSSSGCQSQ-------SPNASPPPKRHKKTMNSHHSPTRP 98
>Q9N1A4:STP2_PONPY Nuclear transition protein 2 - Pongo pygmaeus (Orangutan)| Length = 138 Score = 36.2 bits (82), Expect = 0.35 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 8/108 (7%) Frame = -1 Query: 1220 TRTNTTPI----LLCSEQKQSSTKEP-TCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPA 1056 T+T++ PI L + Q QS T P TC+ HR T S C ++ Q + Q PA Sbjct: 3 TKTHSLPITHTQLHSNSQPQSRTCSPCTCTRHRQTFSQSCRQS---QRGSWSQNSSQSPA 59 Query: 1055 PTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLG---PPTKP 921 +P+ S+ Q Q P+ + P +K + PT+P Sbjct: 60 SHHNPTGAHSSSGHQSQ-------SPNDSPPPKRHKKTMNSHHSPTRP 100
>Q9N1A7:STP2_PANTR Nuclear transition protein 2 - Pan troglodytes (Chimpanzee)| Length = 133 Score = 35.8 bits (81), Expect = 0.45 Identities = 24/81 (29%), Positives = 37/81 (45%) Frame = -1 Query: 1220 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 1041 T+T++ PI S + TC+ HR T S C ++ + +S Q PA R+P Sbjct: 3 TKTHSLPITHTQLHSNSQPQSCTCTRHRQTFSQSCRQSHCGSRSRSSS---QSPASHRNP 59 Query: 1040 SHGDSAPSTQGQ*SRRPTGGP 978 + A S+ G S+ P P Sbjct: 60 T---GAHSSSGHQSQSPNTSP 77
>O42632:KPC1_COCHE Protein kinase C-like - Cochliobolus heterostrophus (Drechslera| maydis) Length = 1174 Score = 33.5 bits (75), Expect = 2.2 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -1 Query: 1061 PAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 921 P P R PS+ SA S + T G +S AP SP PP+ P Sbjct: 651 PGPPRQPSYPSSATSVDAARASYSTTGTASTGAPTSPTSGSRPPSGP 697
>P17656:COL2_CAEEL Cuticle collagen 2 precursor - Caenorhabditis elegans| Length = 301 Score = 33.5 bits (75), Expect = 2.2 Identities = 18/46 (39%), Positives = 21/46 (45%) Frame = -1 Query: 1064 GPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPT 927 GP P+ D AP T G P G P +A APG+ GP T Sbjct: 224 GPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAPGADGNPGGPGT 269
>O50429:FBIC_MYCTU FO synthase - Mycobacterium tuberculosis| Length = 856 Score = 33.1 bits (74), Expect = 2.9 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Frame = +2 Query: 806 GALQPHLPFIPFXXXXXXXXXXXAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 985 G + P LP + AV+ ++ H SP+ + V G + + + GL Sbjct: 603 GGIDPELPVTGYADLVR------AVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLIGL 656 Query: 986 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 1141 + AG T PG + L V WVL G I+++ A GL +S YG D Sbjct: 657 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVD 714
>Q7U0G9:FBIC_MYCBO FO synthase - Mycobacterium bovis| Length = 856 Score = 33.1 bits (74), Expect = 2.9 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Frame = +2 Query: 806 GALQPHLPFIPFXXXXXXXXXXXAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 985 G + P LP + AV+ ++ H SP+ + V G + + + GL Sbjct: 603 GGIDPELPVTGYADLVR------AVKARVPSMHVHAFSPMEIANGVTKSGLSIREWLIGL 656 Query: 986 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 1141 + AG T PG + L V WVL G I+++ A GL +S YG D Sbjct: 657 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSLWIEIVTTAHEVGLRSSSTMMYGHVD 714
>Q9N1A5:STP2_GORGO Nuclear transition protein 2 - Gorilla gorilla gorilla (Lowland| gorilla) Length = 133 Score = 32.7 bits (73), Expect = 3.8 Identities = 23/81 (28%), Positives = 36/81 (44%) Frame = -1 Query: 1220 TRTNTTPILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSP 1041 T+T++ PI S + TC+ H T S C ++ + +S Q PA R+P Sbjct: 3 TKTHSLPITHTQLHSNSQPQSRTCTRHCQTFSQSCRQSHRGSRSRSSS---QSPASHRNP 59 Query: 1040 SHGDSAPSTQGQ*SRRPTGGP 978 + A S+ G S+ P P Sbjct: 60 T---GAHSSSGHQSQSPNTSP 77
>Q9P227:RHG23_HUMAN Rho GTPase-activating protein 23 - Homo sapiens (Human)| Length = 1491 Score = 32.7 bits (73), Expect = 3.8 Identities = 21/54 (38%), Positives = 25/54 (46%) Frame = -1 Query: 1082 ASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAVAPGSPRKRLGPPTKP 921 +ST+ P G +AP TQ RP G AVAP +P RL PP P Sbjct: 1187 SSTDDDSEQEAHKPGAGATAPGTQ----ERPQGPLPGAVAPEAP-GRLSPPAAP 1235
>Q8CIP4:MARK4_MOUSE MAP/microtubule affinity-regulating kinase 4 - Mus musculus (Mouse)| Length = 752 Score = 32.3 bits (72), Expect = 5.0 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Frame = -1 Query: 1199 ILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSPSHGDSAP 1020 + L + S T T S S+H+ G + + +Q ++F GP+P +P H +P Sbjct: 382 LALARVRAPSDTTNGTSSSKGSSHNKGQRASSSTYHRQRRHSDFCGPSP--APLHPKRSP 439 Query: 1019 STQGQ---*SRRPTGGPSSAVAPGSPRKRLGPPTKP 921 ++ G R G +S A GS + L PP+ P Sbjct: 440 TSTGDTELKEERMPGRKASCSAVGSGSRGL-PPSSP 474
>Q9CBX6:FBIC_MYCLE FO synthase - Mycobacterium leprae| Length = 863 Score = 32.3 bits (72), Expect = 5.0 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Frame = +2 Query: 806 GALQPHLPFIPFXXXXXXXXXXXAVQMLTETLTWHWKSPVWLVAPVVYEGYRVLQLMRGL 985 G + P LP + AV+ ++ H SP+ + V G+ + + + L Sbjct: 610 GGIDPELPVTGYVDLVR------AVKTRVPSMHVHAFSPMEIANGVAKSGFSIREWLISL 663 Query: 986 QLAGEITAPGWMVQSLRGLVTWWVLVLG-------IQLMRVAWFAGLNFASNPSYGSSD 1141 + AG T PG + L V WVL G I+++ A GL +S YG D Sbjct: 664 REAGLDTIPGTAAEILDDEVR-WVLTKGKLPTSMWIEIVTTAHEVGLRSSSTMMYGHVD 721
>Q8WWM7:ATX2L_HUMAN Ataxin-2-like protein - Homo sapiens (Human)| Length = 1075 Score = 32.3 bits (72), Expect = 5.0 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Frame = -1 Query: 1061 PAPTRSPSHGDSAPSTQGQ*SRRPTGG--PSSAVAPGSPRKRLGPPTKP 921 P P + PS P TQ +RRP GG P + PG PP P Sbjct: 4 PQPLQQPSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLATSAAPPGPP 52
>O88935:SYN1_MOUSE Synapsin-1 - Mus musculus (Mouse)| Length = 706 Score = 32.0 bits (71), Expect = 6.5 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 1100 QQTKQLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRP-TGGPSSAVAPGSPRKRLGPPT 927 Q T+Q + GPAPT++ QG + P GP+ + P R GPPT Sbjct: 562 QATRQAS---ISGPAPTKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPGPRTGPPT 617
>Q9KFL5:UPPP1_BACHD Undecaprenyl-diphosphatase 1 - Bacillus halodurans| Length = 274 Score = 31.6 bits (70), Expect = 8.5 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +2 Query: 515 LGPSVLLVTGIVP-----TLWLPLPSVFLGPNIAGLLSLVGLDCIFNMGAMLFFLM 667 LG VL ++ IV LW+P F+G IA +SL+ I G +++F + Sbjct: 205 LGSGVLAISDIVQDPHFTALWIPYTIAFIGSFIASYVSLLWFMNIMRHGKLIYFAL 260
>Q9NRR5:UBQL4_HUMAN Ubiquilin-4 - Homo sapiens (Human)| Length = 601 Score = 31.6 bits (70), Expect = 8.5 Identities = 20/44 (45%), Positives = 21/44 (47%), Gaps = 1/44 (2%) Frame = -1 Query: 1079 STEFQGPAPTRSPSHGDSAPSTQGQ*SRRPT-GGPSSAVAPGSP 951 ST PA PS SA S G SRR + GGPS GSP Sbjct: 109 STTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAGEGSP 152
>P17600:SYN1_HUMAN Synapsin-1 - Homo sapiens (Human)| Length = 705 Score = 31.6 bits (70), Expect = 8.5 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 9/53 (16%) Frame = -1 Query: 1061 PAPTRSPSH--GDSAPSTQGQ*--SRRPTGGPSS-----AVAPGSPRKRLGPP 930 P+PT +P +AP TQGQ SR GGP + A SP+++ GPP Sbjct: 509 PSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPP 561
>Q9ULL8:SHRM4_HUMAN Protein Shroom4 - Homo sapiens (Human)| Length = 1498 Score = 31.6 bits (70), Expect = 8.5 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 13/67 (19%) Frame = -1 Query: 1082 ASTE--FQGPAPTRSPSHGDSAPSTQGQ*SRRPTGG-----------PSSAVAPGSPRKR 942 AST+ QGP PT++PS + T G SRR GG P G + Sbjct: 212 ASTDCIMQGPGPTKAPSGRPNVAETSGG-SRRTNGGHLTPSSQMSSRPQEGYQSGPAKAV 270 Query: 941 LGPPTKP 921 GPP P Sbjct: 271 RGPPQPP 277
>Q28645:PODXL_RABIT Podocalyxin-like protein 1 precursor - Oryctolagus cuniculus (Rabbit)| Length = 551 Score = 31.6 bits (70), Expect = 8.5 Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Frame = -1 Query: 1175 QSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLA--STEFQGPAPTRSPSHGDSAPSTQGQ* 1002 Q + ++P S S HS+ + T Q +T+ P PT P ++P G Sbjct: 131 QVAAQDPAASKAPSNHSITTKPLATEATSQAPRQTTDVGTPGPTAPPVTNSTSPDLLGHA 190 Query: 1001 SRRPTGGP--SSAVAPGSPRKRLGPPT 927 + +P+ GP S A GS LGP T Sbjct: 191 TPKPSEGPQLSFPTAAGS----LGPVT 213
>Q9UU83:PAL1_SCHPO Protein pal1 - Schizosaccharomyces pombe (Fission yeast)| Length = 425 Score = 31.6 bits (70), Expect = 8.5 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = -1 Query: 1139 RSTHSLGCLRN*AQQTK--QLASTEFQGPAPTRSPSHGDSAPSTQGQ*SRRPTGGPSSAV 966 RS S+G + +K + ST + RSPSH DS+PSTQ R + +V Sbjct: 86 RSNSSMGTFDPPPRYSKIARARSTHVASSSRHRSPSHNDSSPSTQSSLKSRGSIRRYKSV 145 Query: 965 APGSPR 948 GS R Sbjct: 146 REGSHR 151
>Q96L34:MARK4_HUMAN MAP/microtubule affinity-regulating kinase 4 - Homo sapiens (Human)| Length = 752 Score = 31.6 bits (70), Expect = 8.5 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Frame = -1 Query: 1199 ILLCSEQKQSSTKEPTCSHHRSTHSLGCLRN*AQQTKQLASTEFQGPAPTRSPSHGDSAP 1020 + L + S T T S ++HS G + + +Q ++F GP+P +P H +P Sbjct: 382 LALARVRAPSDTTNGTSSSKGTSHSKGQRSSSSTYHRQRRHSDFCGPSP--APLHPKRSP 439 Query: 1019 STQGQ---*SRRPTGGPSSAVAPGSPRKRLGPPTKP 921 ++ G+ R G +S GS + L PP+ P Sbjct: 440 TSTGEAELKEERLPGRKASCSTAGSGSRGL-PPSSP 474 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 276,909,018 Number of extensions: 6811959 Number of successful extensions: 20984 Number of sequences better than 10.0: 22 Number of HSP's gapped: 20917 Number of HSP's successfully gapped: 22 Length of query: 473 Length of database: 100,686,439 Length adjustment: 117 Effective length of query: 356 Effective length of database: 68,593,924 Effective search space: 24419436944 Effective search space used: 24419436944 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
