ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf51b05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR855204.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159I10, complete sequence Length = 108998 Score = 630 bits (318), Expect = e-177 Identities = 708/838 (84%) Strand = Plus / Minus Query: 281 ggccattttaaaaacattgcattgcgatgcactaagaatttgccttgggaggcctctctt 340 ||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||| Sbjct: 49142 ggccattttgaaaatattgtcttgcgatgcactcaaaatttgtcttgggaggcctccctt 49083 Query: 341 ccgtatgcttctgcagaggacgatgccagcattatcatgggaacaaatgttgttgaagct 400 || ||||| |||||||| || | ||||| |||||| | |||||| | ||||||||| || Sbjct: 49082 ccatatgcctctgcagaagatggtgccaacattattaagggaactgaagttgttgaacct 49023 Query: 401 attgatacagaagaagctccagaaattccaatcctccagagtgatcaggatgttgtggac 460 ||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 49022 attgatacagaagaagcaccagaaattccgatcctccagagtgaccaggattttgtggag 48963 Query: 461 gtgcagaatgaaccttctaggcagctagcaacatttaaactgccaatgtggctgttaggg 520 ||| || |||||||| | |||||| |||| |||||||||||||| ||||| |||||| Sbjct: 48962 gtgataaaagaaccttccatgcagctgacaacttttaaactgccaatttggcttttaggg 48903 Query: 521 ccttcggttctgttggttaccggtatagttccaactttgtggctgccattgccttcagtg 580 ||||| ||||||||||||| |||||||||||||||| ||||| |||||| |||||||| Sbjct: 48902 ccttcaattctgttggttacgagtatagttccaactttatggctaccattgtcttcagtg 48843 Query: 581 ttccttggcccaaacattgctggccttctatccctagtgggtctcgactgcatctttaac 640 || ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||||| Sbjct: 48842 tttcttggtcccaacattgccggccttctatccctagtgggacttgacttcatttttaac 48783 Query: 641 atgggagcaatgctgtttttccttatggccgacgcgtgtgggcgtccggagaacaattca 700 ||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||| Sbjct: 48782 atgggagcaatgctgtttttccttatggctgatgcttgtgggcgtccggaggccaattca 48723 Query: 701 ttcgacctgacaaggcagatcccaacttcttacagaatgtggaatctaattgccagcata 760 | ||| |||| || ||||||||||||||||||||| | |||||||| |||||||||| Sbjct: 48722 tccgaactgataaagcagatcccaacttcttacaggttctggaatctggctgccagcata 48663 Query: 761 ttgggcttcgttgctcctttggccctgcttttcgcgtctcacgggggagctctgcagccg 820 | ||||| ||| ||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct: 48662 gtaggctttcttgttcctttggccctgtttttcgcatctcataagggtactctgcagcca 48603 Query: 821 catctaccattcatcccgttcttggtgctgcttgggccatatctattactacttgcagtg 880 ||| |||||||||| ||||| ||||||||||| |||||||| || || ||| | || Sbjct: 48602 catataccattcattccgtttgcagtgctgcttggaccatatctcttgctcctttctgta 48543 Query: 881 cagatgctgaccgagacgcttacatggcactggaaatcgccggtttggttggtggcccca 940 || | |||| |||| |||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 48542 caagttttgactgagatgcttacttggcactggaaatcgccagtttggttggtggcccct 48483 Query: 941 gtcgtttacgagggctaccgggtgctacagctgatgaggggcctccagttggccggcgag 1000 || ||||| ||||| ||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct: 48482 gtggtttatgagggttaccgagttctacagctgatgaggggtcttcagttagccgatgag 48423 Query: 1001 atcactgcccctgggtggatggtgcagagtctccgtggcttggtgacctggtgggtgctg 1060 |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||| Sbjct: 48422 atcactgcgcctggatggatggtgcaaagtcttcgtggtttggtgtcatggtgggttctg 48363 Query: 1061 gtccttggaattcagttgatgcgagttgcttggtttgctgggctcaatttcgcaagca 1118 || || || || || ||||||| || |||||||||||||| ||||| || ||||||| Sbjct: 48362 gttctaggcatccaactgatgcgcgtggcttggtttgctggactcaaatttgcaagca 48305 Score = 58.0 bits (29), Expect = 9e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 155 tcctgtaccatggcttctttgctttgttcacagataaaactaaacagagcatatgttagg 214 |||||||||||||| ||||| ||||||||||||||||| ||| || |||| || ||||| Sbjct: 49274 tcctgtaccatggcctctttaatttgttcacagataaaattaagcaaagcacatattagg 49215 Query: 215 a 215 | Sbjct: 49214 a 49214
>ref|NM_001059952.1| Oryza sativa (japonica cultivar-group) Os04g0534500 (Os04g0534500) mRNA, complete cds Length = 1261 Score = 630 bits (318), Expect = e-177 Identities = 708/838 (84%) Strand = Plus / Plus Query: 281 ggccattttaaaaacattgcattgcgatgcactaagaatttgccttgggaggcctctctt 340 ||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||| Sbjct: 236 ggccattttgaaaatattgtcttgcgatgcactcaaaatttgtcttgggaggcctccctt 295 Query: 341 ccgtatgcttctgcagaggacgatgccagcattatcatgggaacaaatgttgttgaagct 400 || ||||| |||||||| || | ||||| |||||| | |||||| | ||||||||| || Sbjct: 296 ccatatgcctctgcagaagatggtgccaacattattaagggaactgaagttgttgaacct 355 Query: 401 attgatacagaagaagctccagaaattccaatcctccagagtgatcaggatgttgtggac 460 ||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 356 attgatacagaagaagcaccagaaattccgatcctccagagtgaccaggattttgtggag 415 Query: 461 gtgcagaatgaaccttctaggcagctagcaacatttaaactgccaatgtggctgttaggg 520 ||| || |||||||| | |||||| |||| |||||||||||||| ||||| |||||| Sbjct: 416 gtgataaaagaaccttccatgcagctgacaacttttaaactgccaatttggcttttaggg 475 Query: 521 ccttcggttctgttggttaccggtatagttccaactttgtggctgccattgccttcagtg 580 ||||| ||||||||||||| |||||||||||||||| ||||| |||||| |||||||| Sbjct: 476 ccttcaattctgttggttacgagtatagttccaactttatggctaccattgtcttcagtg 535 Query: 581 ttccttggcccaaacattgctggccttctatccctagtgggtctcgactgcatctttaac 640 || ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||||| Sbjct: 536 tttcttggtcccaacattgccggccttctatccctagtgggacttgacttcatttttaac 595 Query: 641 atgggagcaatgctgtttttccttatggccgacgcgtgtgggcgtccggagaacaattca 700 ||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||| Sbjct: 596 atgggagcaatgctgtttttccttatggctgatgcttgtgggcgtccggaggccaattca 655 Query: 701 ttcgacctgacaaggcagatcccaacttcttacagaatgtggaatctaattgccagcata 760 | ||| |||| || ||||||||||||||||||||| | |||||||| |||||||||| Sbjct: 656 tccgaactgataaagcagatcccaacttcttacaggttctggaatctggctgccagcata 715 Query: 761 ttgggcttcgttgctcctttggccctgcttttcgcgtctcacgggggagctctgcagccg 820 | ||||| ||| ||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct: 716 gtaggctttcttgttcctttggccctgtttttcgcatctcataagggtactctgcagcca 775 Query: 821 catctaccattcatcccgttcttggtgctgcttgggccatatctattactacttgcagtg 880 ||| |||||||||| ||||| ||||||||||| |||||||| || || ||| | || Sbjct: 776 catataccattcattccgtttgcagtgctgcttggaccatatctcttgctcctttctgta 835 Query: 881 cagatgctgaccgagacgcttacatggcactggaaatcgccggtttggttggtggcccca 940 || | |||| |||| |||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 836 caagttttgactgagatgcttacttggcactggaaatcgccagtttggttggtggcccct 895 Query: 941 gtcgtttacgagggctaccgggtgctacagctgatgaggggcctccagttggccggcgag 1000 || ||||| ||||| ||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct: 896 gtggtttatgagggttaccgagttctacagctgatgaggggtcttcagttagccgatgag 955 Query: 1001 atcactgcccctgggtggatggtgcagagtctccgtggcttggtgacctggtgggtgctg 1060 |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||| Sbjct: 956 atcactgcgcctggatggatggtgcaaagtcttcgtggtttggtgtcatggtgggttctg 1015 Query: 1061 gtccttggaattcagttgatgcgagttgcttggtttgctgggctcaatttcgcaagca 1118 || || || || || ||||||| || |||||||||||||| ||||| || ||||||| Sbjct: 1016 gttctaggcatccaactgatgcgcgtggcttggtttgctggactcaaatttgcaagca 1073 Score = 58.0 bits (29), Expect = 9e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 155 tcctgtaccatggcttctttgctttgttcacagataaaactaaacagagcatatgttagg 214 |||||||||||||| ||||| ||||||||||||||||| ||| || |||| || ||||| Sbjct: 104 tcctgtaccatggcctctttaatttgttcacagataaaattaagcaaagcacatattagg 163 Query: 215 a 215 | Sbjct: 164 a 164
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 630 bits (318), Expect = e-177 Identities = 708/838 (84%) Strand = Plus / Minus Query: 281 ggccattttaaaaacattgcattgcgatgcactaagaatttgccttgggaggcctctctt 340 ||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||| Sbjct: 26690989 ggccattttgaaaatattgtcttgcgatgcactcaaaatttgtcttgggaggcctccctt 26690930 Query: 341 ccgtatgcttctgcagaggacgatgccagcattatcatgggaacaaatgttgttgaagct 400 || ||||| |||||||| || | ||||| |||||| | |||||| | ||||||||| || Sbjct: 26690929 ccatatgcctctgcagaagatggtgccaacattattaagggaactgaagttgttgaacct 26690870 Query: 401 attgatacagaagaagctccagaaattccaatcctccagagtgatcaggatgttgtggac 460 ||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 26690869 attgatacagaagaagcaccagaaattccgatcctccagagtgaccaggattttgtggag 26690810 Query: 461 gtgcagaatgaaccttctaggcagctagcaacatttaaactgccaatgtggctgttaggg 520 ||| || |||||||| | |||||| |||| |||||||||||||| ||||| |||||| Sbjct: 26690809 gtgataaaagaaccttccatgcagctgacaacttttaaactgccaatttggcttttaggg 26690750 Query: 521 ccttcggttctgttggttaccggtatagttccaactttgtggctgccattgccttcagtg 580 ||||| ||||||||||||| |||||||||||||||| ||||| |||||| |||||||| Sbjct: 26690749 ccttcaattctgttggttacgagtatagttccaactttatggctaccattgtcttcagtg 26690690 Query: 581 ttccttggcccaaacattgctggccttctatccctagtgggtctcgactgcatctttaac 640 || ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||||| Sbjct: 26690689 tttcttggtcccaacattgccggccttctatccctagtgggacttgacttcatttttaac 26690630 Query: 641 atgggagcaatgctgtttttccttatggccgacgcgtgtgggcgtccggagaacaattca 700 ||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||| Sbjct: 26690629 atgggagcaatgctgtttttccttatggctgatgcttgtgggcgtccggaggccaattca 26690570 Query: 701 ttcgacctgacaaggcagatcccaacttcttacagaatgtggaatctaattgccagcata 760 | ||| |||| || ||||||||||||||||||||| | |||||||| |||||||||| Sbjct: 26690569 tccgaactgataaagcagatcccaacttcttacaggttctggaatctggctgccagcata 26690510 Query: 761 ttgggcttcgttgctcctttggccctgcttttcgcgtctcacgggggagctctgcagccg 820 | ||||| ||| ||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct: 26690509 gtaggctttcttgttcctttggccctgtttttcgcatctcataagggtactctgcagcca 26690450 Query: 821 catctaccattcatcccgttcttggtgctgcttgggccatatctattactacttgcagtg 880 ||| |||||||||| ||||| ||||||||||| |||||||| || || ||| | || Sbjct: 26690449 catataccattcattccgtttgcagtgctgcttggaccatatctcttgctcctttctgta 26690390 Query: 881 cagatgctgaccgagacgcttacatggcactggaaatcgccggtttggttggtggcccca 940 || | |||| |||| |||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 26690389 caagttttgactgagatgcttacttggcactggaaatcgccagtttggttggtggcccct 26690330 Query: 941 gtcgtttacgagggctaccgggtgctacagctgatgaggggcctccagttggccggcgag 1000 || ||||| ||||| ||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct: 26690329 gtggtttatgagggttaccgagttctacagctgatgaggggtcttcagttagccgatgag 26690270 Query: 1001 atcactgcccctgggtggatggtgcagagtctccgtggcttggtgacctggtgggtgctg 1060 |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||| Sbjct: 26690269 atcactgcgcctggatggatggtgcaaagtcttcgtggtttggtgtcatggtgggttctg 26690210 Query: 1061 gtccttggaattcagttgatgcgagttgcttggtttgctgggctcaatttcgcaagca 1118 || || || || || ||||||| || |||||||||||||| ||||| || ||||||| Sbjct: 26690209 gttctaggcatccaactgatgcgcgtggcttggtttgctggactcaaatttgcaagca 26690152 Score = 58.0 bits (29), Expect = 9e-05 Identities = 53/61 (86%) Strand = Plus / Minus Query: 155 tcctgtaccatggcttctttgctttgttcacagataaaactaaacagagcatatgttagg 214 |||||||||||||| ||||| ||||||||||||||||| ||| || |||| || ||||| Sbjct: 26691121 tcctgtaccatggcctctttaatttgttcacagataaaattaagcaaagcacatattagg 26691062 Query: 215 a 215 | Sbjct: 26691061 a 26691061
>emb|AL662998.4|OSJN00196 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11, complete sequence Length = 113677 Score = 630 bits (318), Expect = e-177 Identities = 708/838 (84%) Strand = Plus / Plus Query: 281 ggccattttaaaaacattgcattgcgatgcactaagaatttgccttgggaggcctctctt 340 ||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||| Sbjct: 92206 ggccattttgaaaatattgtcttgcgatgcactcaaaatttgtcttgggaggcctccctt 92265 Query: 341 ccgtatgcttctgcagaggacgatgccagcattatcatgggaacaaatgttgttgaagct 400 || ||||| |||||||| || | ||||| |||||| | |||||| | ||||||||| || Sbjct: 92266 ccatatgcctctgcagaagatggtgccaacattattaagggaactgaagttgttgaacct 92325 Query: 401 attgatacagaagaagctccagaaattccaatcctccagagtgatcaggatgttgtggac 460 ||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 92326 attgatacagaagaagcaccagaaattccgatcctccagagtgaccaggattttgtggag 92385 Query: 461 gtgcagaatgaaccttctaggcagctagcaacatttaaactgccaatgtggctgttaggg 520 ||| || |||||||| | |||||| |||| |||||||||||||| ||||| |||||| Sbjct: 92386 gtgataaaagaaccttccatgcagctgacaacttttaaactgccaatttggcttttaggg 92445 Query: 521 ccttcggttctgttggttaccggtatagttccaactttgtggctgccattgccttcagtg 580 ||||| ||||||||||||| |||||||||||||||| ||||| |||||| |||||||| Sbjct: 92446 ccttcaattctgttggttacgagtatagttccaactttatggctaccattgtcttcagtg 92505 Query: 581 ttccttggcccaaacattgctggccttctatccctagtgggtctcgactgcatctttaac 640 || ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||||| Sbjct: 92506 tttcttggtcccaacattgccggccttctatccctagtgggacttgacttcatttttaac 92565 Query: 641 atgggagcaatgctgtttttccttatggccgacgcgtgtgggcgtccggagaacaattca 700 ||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||| Sbjct: 92566 atgggagcaatgctgtttttccttatggctgatgcttgtgggcgtccggaggccaattca 92625 Query: 701 ttcgacctgacaaggcagatcccaacttcttacagaatgtggaatctaattgccagcata 760 | ||| |||| || ||||||||||||||||||||| | |||||||| |||||||||| Sbjct: 92626 tccgaactgataaagcagatcccaacttcttacaggttctggaatctggctgccagcata 92685 Query: 761 ttgggcttcgttgctcctttggccctgcttttcgcgtctcacgggggagctctgcagccg 820 | ||||| ||| ||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct: 92686 gtaggctttcttgttcctttggccctgtttttcgcatctcataagggtactctgcagcca 92745 Query: 821 catctaccattcatcccgttcttggtgctgcttgggccatatctattactacttgcagtg 880 ||| |||||||||| ||||| ||||||||||| |||||||| || || ||| | || Sbjct: 92746 catataccattcattccgtttgcagtgctgcttggaccatatctcttgctcctttctgta 92805 Query: 881 cagatgctgaccgagacgcttacatggcactggaaatcgccggtttggttggtggcccca 940 || | |||| |||| |||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 92806 caagttttgactgagatgcttacttggcactggaaatcgccagtttggttggtggcccct 92865 Query: 941 gtcgtttacgagggctaccgggtgctacagctgatgaggggcctccagttggccggcgag 1000 || ||||| ||||| ||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct: 92866 gtggtttatgagggttaccgagttctacagctgatgaggggtcttcagttagccgatgag 92925 Query: 1001 atcactgcccctgggtggatggtgcagagtctccgtggcttggtgacctggtgggtgctg 1060 |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||| Sbjct: 92926 atcactgcgcctggatggatggtgcaaagtcttcgtggtttggtgtcatggtgggttctg 92985 Query: 1061 gtccttggaattcagttgatgcgagttgcttggtttgctgggctcaatttcgcaagca 1118 || || || || || ||||||| || |||||||||||||| ||||| || ||||||| Sbjct: 92986 gttctaggcatccaactgatgcgcgtggcttggtttgctggactcaaatttgcaagca 93043 Score = 58.0 bits (29), Expect = 9e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 155 tcctgtaccatggcttctttgctttgttcacagataaaactaaacagagcatatgttagg 214 |||||||||||||| ||||| ||||||||||||||||| ||| || |||| || ||||| Sbjct: 92074 tcctgtaccatggcctctttaatttgttcacagataaaattaagcaaagcacatattagg 92133 Query: 215 a 215 | Sbjct: 92134 a 92134
>dbj|AK105805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B06, full insert sequence Length = 1350 Score = 630 bits (318), Expect = e-177 Identities = 708/838 (84%) Strand = Plus / Plus Query: 281 ggccattttaaaaacattgcattgcgatgcactaagaatttgccttgggaggcctctctt 340 ||||||||| |||| |||| |||||||||||| | |||||| ||||||||||||| ||| Sbjct: 236 ggccattttgaaaatattgtcttgcgatgcactcaaaatttgtcttgggaggcctccctt 295 Query: 341 ccgtatgcttctgcagaggacgatgccagcattatcatgggaacaaatgttgttgaagct 400 || ||||| |||||||| || | ||||| |||||| | |||||| | ||||||||| || Sbjct: 296 ccatatgcctctgcagaagatggtgccaacattattaagggaactgaagttgttgaacct 355 Query: 401 attgatacagaagaagctccagaaattccaatcctccagagtgatcaggatgttgtggac 460 ||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| Sbjct: 356 attgatacagaagaagcaccagaaattccgatcctccagagtgaccaggattttgtggag 415 Query: 461 gtgcagaatgaaccttctaggcagctagcaacatttaaactgccaatgtggctgttaggg 520 ||| || |||||||| | |||||| |||| |||||||||||||| ||||| |||||| Sbjct: 416 gtgataaaagaaccttccatgcagctgacaacttttaaactgccaatttggcttttaggg 475 Query: 521 ccttcggttctgttggttaccggtatagttccaactttgtggctgccattgccttcagtg 580 ||||| ||||||||||||| |||||||||||||||| ||||| |||||| |||||||| Sbjct: 476 ccttcaattctgttggttacgagtatagttccaactttatggctaccattgtcttcagtg 535 Query: 581 ttccttggcccaaacattgctggccttctatccctagtgggtctcgactgcatctttaac 640 || ||||| || |||||||| |||||||||||||||||||| || |||| ||| |||||| Sbjct: 536 tttcttggtcccaacattgccggccttctatccctagtgggacttgacttcatttttaac 595 Query: 641 atgggagcaatgctgtttttccttatggccgacgcgtgtgggcgtccggagaacaattca 700 ||||||||||||||||||||||||||||| || || ||||||||||||||| ||||||| Sbjct: 596 atgggagcaatgctgtttttccttatggctgatgcttgtgggcgtccggaggccaattca 655 Query: 701 ttcgacctgacaaggcagatcccaacttcttacagaatgtggaatctaattgccagcata 760 | ||| |||| || ||||||||||||||||||||| | |||||||| |||||||||| Sbjct: 656 tccgaactgataaagcagatcccaacttcttacaggttctggaatctggctgccagcata 715 Query: 761 ttgggcttcgttgctcctttggccctgcttttcgcgtctcacgggggagctctgcagccg 820 | ||||| ||| ||||||||||||| ||||||| ||||| ||| |||||||||| Sbjct: 716 gtaggctttcttgttcctttggccctgtttttcgcatctcataagggtactctgcagcca 775 Query: 821 catctaccattcatcccgttcttggtgctgcttgggccatatctattactacttgcagtg 880 ||| |||||||||| ||||| ||||||||||| |||||||| || || ||| | || Sbjct: 776 catataccattcattccgtttgcagtgctgcttggaccatatctcttgctcctttctgta 835 Query: 881 cagatgctgaccgagacgcttacatggcactggaaatcgccggtttggttggtggcccca 940 || | |||| |||| |||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 836 caagttttgactgagatgcttacttggcactggaaatcgccagtttggttggtggcccct 895 Query: 941 gtcgtttacgagggctaccgggtgctacagctgatgaggggcctccagttggccggcgag 1000 || ||||| ||||| ||||| || ||||||||||||||||| || ||||| |||| ||| Sbjct: 896 gtggtttatgagggttaccgagttctacagctgatgaggggtcttcagttagccgatgag 955 Query: 1001 atcactgcccctgggtggatggtgcagagtctccgtggcttggtgacctggtgggtgctg 1060 |||||||| ||||| ||||||||||| ||||| ||||| |||||| | |||||||| ||| Sbjct: 956 atcactgcgcctggatggatggtgcaaagtcttcgtggtttggtgtcatggtgggttctg 1015 Query: 1061 gtccttggaattcagttgatgcgagttgcttggtttgctgggctcaatttcgcaagca 1118 || || || || || ||||||| || |||||||||||||| ||||| || ||||||| Sbjct: 1016 gttctaggcatccaactgatgcgcgtggcttggtttgctggactcaaatttgcaagca 1073 Score = 58.0 bits (29), Expect = 9e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 155 tcctgtaccatggcttctttgctttgttcacagataaaactaaacagagcatatgttagg 214 |||||||||||||| ||||| ||||||||||||||||| ||| || |||| || ||||| Sbjct: 104 tcctgtaccatggcctctttaatttgttcacagataaaattaagcaaagcacatattagg 163 Query: 215 a 215 | Sbjct: 164 a 164
>gb|AC012100.7| Homo sapiens chromosome 15 clone RP11-507J18 map 15q21.1, complete sequence Length = 195068 Score = 56.0 bits (28), Expect = 4e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 1299 ctgtagtatacatataaaatgaaaattgtaca 1330 ||||||||||| |||||||||||||||||||| Sbjct: 3008 ctgtagtatacgtataaaatgaaaattgtaca 3039
>gb|AC084756.3|AC084756 Homo sapiens chromosome 15 clone RP11-120K9 map 15q21.2, complete sequence Length = 166138 Score = 56.0 bits (28), Expect = 4e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 1299 ctgtagtatacatataaaatgaaaattgtaca 1330 ||||||||||| |||||||||||||||||||| Sbjct: 135771 ctgtagtatacgtataaaatgaaaattgtaca 135802
>gb|AC122546.14| Mus musculus chromosome 5, clone RP23-408A1, complete sequence Length = 191640 Score = 46.1 bits (23), Expect = 0.35 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1178 tctgctcactgcacagtagaatg 1200 ||||||||||||||||||||||| Sbjct: 97593 tctgctcactgcacagtagaatg 97571
>gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complete sequence Length = 180961 Score = 42.1 bits (21), Expect = 5.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 968 cagctgatgaggggcctccagttgg 992 ||||||||||||||| ||||||||| Sbjct: 57718 cagctgatgaggggcttccagttgg 57742
>emb|CR388416.6| Zebrafish DNA sequence from clone DKEY-165B20 in linkage group 14, complete sequence Length = 207245 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 tcacagataaaactaaacaga 202 ||||||||||||||||||||| Sbjct: 778 tcacagataaaactaaacaga 798
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 553 aactttgtggctgccattgccttcagtgt 581 |||||||||||||||||| || ||||||| Sbjct: 3824874 aactttgtggctgccatttccatcagtgt 3824902
>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part of a novel gene and a novel gene, complete sequence Length = 109088 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1305 tatacatataaaatgaaaatt 1325 ||||||||||||||||||||| Sbjct: 46604 tatacatataaaatgaaaatt 46624
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 553 aactttgtggctgccattgccttcagtgt 581 |||||||||||||||||| || ||||||| Sbjct: 103387 aactttgtggctgccatttccatcagtgt 103415
>emb|CR847504.13| Zebrafish DNA sequence from clone DKEYP-51G9 in linkage group 4, complete sequence Length = 138906 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 tcacagataaaactaaacaga 202 ||||||||||||||||||||| Sbjct: 125416 tcacagataaaactaaacaga 125436
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 42.1 bits (21), Expect = 5.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 553 aactttgtggctgccattgccttcagtgt 581 |||||||||||||||||| || ||||||| Sbjct: 31236 aactttgtggctgccatttccatcagtgt 31264
>emb|AL935065.7| Zebrafish DNA sequence from clone CH211-69I14 in linkage group 5, complete sequence Length = 167740 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1214 ttctggtgcatttgtatttgt 1234 ||||||||||||||||||||| Sbjct: 81030 ttctggtgcatttgtatttgt 81010
>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176202 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1305 tatacatataaaatgaaaatt 1325 ||||||||||||||||||||| Sbjct: 133023 tatacatataaaatgaaaatt 133043
>emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chromosome X, complete sequence Length = 203422 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1302 tagtatacatataaaatgaaa 1322 ||||||||||||||||||||| Sbjct: 193668 tagtatacatataaaatgaaa 193688
>emb|AJ344137.2|SSC344137 Sus scrofa partial ATP1A1 gene for Na+/K+ ATPase alpha 1 subunit, exons 13-16 Length = 2395 Score = 42.1 bits (21), Expect = 5.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 cccgaggagctccggccggcg 115 ||||||||||||||||||||| Sbjct: 1236 cccgaggagctccggccggcg 1216 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 250,743,372 Number of extensions: 13234915 Number of successful extensions: 254575 Number of sequences better than 10.0: 19 Number of HSP's gapped: 254570 Number of HSP's successfully gapped: 29 Length of query: 1421 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1398 Effective length of database: 18,503,978,556 Effective search space: 25868562021288 Effective search space used: 25868562021288 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
