ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf53e17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001049874.1| Oryza sativa (japonica cultivar-group) Os01g0559000 (Os01g0559000) mRNA, complete cds Length = 1034 Score = 773 bits (390), Expect = 0.0 Identities = 567/626 (90%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 157 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 216 Query: 169 tctacaatcacatcgacatccccaaggtggtggctctgaatgaatctgtggccgggagcg 228 ||| ||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 217 tcttcaaccacatcgacgtccccaaggtggtggctctgaacgaatctgtggcggggagcg 276 Query: 229 tcaaatcggtcttcaagtcgtgggaccagcgcctcgagacttccgggggttttctggaga 288 |||| |||||||||||| | ||||| ||||||||||| || || |||||||||||||||| Sbjct: 277 tcaagtcggtcttcaagccctgggagcagcgcctcgacacctctgggggttttctggaga 336 Query: 289 gtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtgaagatca 348 ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| Sbjct: 337 gtaatgagggtgaccctgagttacttgttttcatcccgtttacatcagacgtcaagatca 396 Query: 349 agagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagagcattta 408 |||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| |||| Sbjct: 397 agagcatctctgttgttggtggtgcagatggaacaagcccttctagaatgagagcgttta 456 Query: 409 taaatagagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcaggaatggg 468 | || ||||||| |||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 457 tcaaccgagaaggcattgacttcaatgatgctcaaaatatgcaacctgtgcaggaatggg 516 Query: 469 aactggcagagaatttgcagggtgttcttgagtatcaaaccaggtattcaaggttccaag 528 | |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | Sbjct: 517 agctggcagagaatttgcagggagttcttgagtaccaaacaaggtattcaaggttccagg 576 Query: 529 gtgtggccaacttaactctgcattttcctgataactttggtggtgatacgactaagatat 588 ||||||| ||| ||||||| ||||| ||||| |||||||| ||||| || |||||||||| Sbjct: 577 gtgtggctaacctaactctacatttccctgagaactttggaggtgacacaactaagatat 636 Query: 589 attacattgggttgcgtggtgaagctactcagaacaaaagggatgttgtggccacaattg 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 attacattgggttgcgtggtgaagctactcagaacaaaagggatgttgtggccacaattg 696 Query: 649 tgtatgaagtaatgcccaatccgtctgatcataaaacagaatccgagactggaggtggtt 708 |||||||| ||||||| ||||| |||||||| ||||| | || |||||||||||||||| Sbjct: 697 tgtatgaaataatgcctaatccatctgatcacaaaactaagtctgagactggaggtggtt 756 Query: 709 tctcacatgttgagtaggcatgtcag 734 |||| ||||||||||||||||||||| Sbjct: 757 tctcgcatgttgagtaggcatgtcag 782
>dbj|AK061456.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H03, full insert sequence Length = 1048 Score = 773 bits (390), Expect = 0.0 Identities = 567/626 (90%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 157 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 216 Query: 169 tctacaatcacatcgacatccccaaggtggtggctctgaatgaatctgtggccgggagcg 228 ||| ||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 217 tcttcaaccacatcgacgtccccaaggtggtggctctgaacgaatctgtggcggggagcg 276 Query: 229 tcaaatcggtcttcaagtcgtgggaccagcgcctcgagacttccgggggttttctggaga 288 |||| |||||||||||| | ||||| ||||||||||| || || |||||||||||||||| Sbjct: 277 tcaagtcggtcttcaagccctgggagcagcgcctcgacacctctgggggttttctggaga 336 Query: 289 gtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtgaagatca 348 ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| Sbjct: 337 gtaatgagggtgaccctgagttacttgttttcatcccgtttacatcagacgtcaagatca 396 Query: 349 agagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagagcattta 408 |||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| |||| Sbjct: 397 agagcatctctgttgttggtggtgcagatggaacaagcccttctagaatgagagcgttta 456 Query: 409 taaatagagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcaggaatggg 468 | || ||||||| |||||||| |||||||||||| ||||| |||||||||||||||| Sbjct: 457 tcaaccgagaaggcattgacttcaatgatgctcaaaatatgcaacctgtgcaggaatggg 516 Query: 469 aactggcagagaatttgcagggtgttcttgagtatcaaaccaggtattcaaggttccaag 528 | |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| | Sbjct: 517 agctggcagagaatttgcagggagttcttgagtaccaaacaaggtattcaaggttccagg 576 Query: 529 gtgtggccaacttaactctgcattttcctgataactttggtggtgatacgactaagatat 588 ||||||| ||| ||||||| ||||| ||||| |||||||| ||||| || |||||||||| Sbjct: 577 gtgtggctaacctaactctacatttccctgagaactttggaggtgacacaactaagatat 636 Query: 589 attacattgggttgcgtggtgaagctactcagaacaaaagggatgttgtggccacaattg 648 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 attacattgggttgcgtggtgaagctactcagaacaaaagggatgttgtggccacaattg 696 Query: 649 tgtatgaagtaatgcccaatccgtctgatcataaaacagaatccgagactggaggtggtt 708 |||||||| ||||||| ||||| |||||||| ||||| | || |||||||||||||||| Sbjct: 697 tgtatgaaataatgcctaatccatctgatcacaaaactaagtctgagactggaggtggtt 756 Query: 709 tctcacatgttgagtaggcatgtcag 734 |||| ||||||||||||||||||||| Sbjct: 757 tctcgcatgttgagtaggcatgtcag 782
>dbj|AK070797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064B10, full insert sequence Length = 1965 Score = 500 bits (252), Expect = e-138 Identities = 369/408 (90%) Strand = Plus / Plus Query: 327 tttacctcagatgtgaagatcaagagcatcgctgttgttggtggtgctgatggtacaagc 386 ||||| ||||| || ||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct: 1306 tttacatcagacgtcaagatcaagagcatctctgttgttggtggtgcagatggaacaagc 1365 Query: 387 ccttcaagaatgagagcatttataaatagagaaggtattgacttttctgatgctcaaaac 446 ||||| ||||||||||| ||||| || ||||||| |||||||| |||||||||||| Sbjct: 1366 ccttctagaatgagagcgtttatcaaccgagaaggcattgacttcaatgatgctcaaaat 1425 Query: 447 atgcagcctgtgcaggaatgggaactggcagagaatttgcagggtgttcttgagtatcaa 506 ||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| Sbjct: 1426 atgcaacctgtgcaggaatgggagctggcagagaatttgcagggagttcttgagtaccaa 1485 Query: 507 accaggtattcaaggttccaaggtgtggccaacttaactctgcattttcctgataacttt 566 || ||||||||||||||||| |||||||| ||| ||||||| ||||| ||||| |||||| Sbjct: 1486 acaaggtattcaaggttccagggtgtggctaacctaactctacatttccctgagaacttt 1545 Query: 567 ggtggtgatacgactaagatatattacattgggttgcgtggtgaagctactcagaacaaa 626 || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1546 ggaggtgacacaactaagatatattacattgggttgcgtggtgaagctactcagaacaaa 1605 Query: 627 agggatgttgtggccacaattgtgtatgaagtaatgcccaatccgtctgatcataaaaca 686 |||||||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||| Sbjct: 1606 agggatgttgtggccacaattgtgtatgaaataatgcctaatccatctgatcacaaaact 1665 Query: 687 gaatccgagactggaggtggtttctcacatgttgagtaggcatgtcag 734 | || |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1666 aagtctgagactggaggtggtttctcgcatgttgagtaggcatgtcag 1713 Score = 280 bits (141), Expect = 1e-71 Identities = 198/217 (91%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 115 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 174 Query: 169 tctacaatcacatcgacatccccaaggtggtggctctgaatgaatctgtggccgggagcg 228 ||| ||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 175 tcttcaaccacatcgacgtccccaaggtggtggctctgaacgaatctgtggcggggagcg 234 Query: 229 tcaaatcggtcttcaagtcgtgggaccagcgcctcgagacttccgggggttttctggaga 288 |||| |||||||||||| | ||||| ||||||||||| || || |||||||||||||||| Sbjct: 235 tcaagtcggtcttcaagccctgggagcagcgcctcgacacctctgggggttttctggaga 294 Query: 289 gtaatgagggtgaccctgagttacttgttttcatccc 325 ||||||||||||||||||||||||||||||||||||| Sbjct: 295 gtaatgagggtgaccctgagttacttgttttcatccc 331
>gb|AY109750.1| Zea mays CL4787_1 mRNA sequence Length = 873 Score = 184 bits (93), Expect = 4e-43 Identities = 159/181 (87%) Strand = Plus / Plus Query: 545 tctgcattttcctgataactttggtggtgatacgactaagatatattacattgggttgcg 604 ||||||||| |||| ||||||||||||||||| ||||| || ||||||||||| | || Sbjct: 493 tctgcatttctctgacaactttggtggtgatacaactaaaatttattacattggactacg 552 Query: 605 tggtgaagctactcagaacaaaagggatgttgtggccacaattgtgtatgaagtaatgcc 664 ||||||||| |||||||||||||||||||| || || |||||||| |||||||| ||||| Sbjct: 553 tggtgaagccactcagaacaaaagggatgtagttgcaacaattgtatatgaagtcatgcc 612 Query: 665 caatccgtctgatcataaaacagaatccgagactggaggtggtttctcacatgttgagta 724 |||||| |||||||| |||||| |||| ||||||||||| |||||||| ||||| ||||| Sbjct: 613 caatccttctgatcacaaaacaaaatctgagactggaggaggtttctcgcatgtggagta 672 Query: 725 g 725 | Sbjct: 673 g 673 Score = 151 bits (76), Expect = 6e-33 Identities = 115/128 (89%) Strand = Plus / Plus Query: 381 acaagcccttcaagaatgagagcatttataaatagagaaggtattgacttttctgatgct 440 |||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 329 acaagcccgtcaagaatgagagcgtttatcaatagagaaggtattgacttttccgatgct 388 Query: 441 caaaacatgcagcctgtgcaggaatgggaactggcagagaatttgcagggtgttcttgag 500 |||||||||||||| ||||||||||||||| | |||||||| |||| || | ||||||| Sbjct: 389 caaaacatgcagccagtgcaggaatgggaattagcagagaacctgcaaggagctcttgag 448 Query: 501 tatcaaac 508 || ||||| Sbjct: 449 taccaaac 456 Score = 139 bits (70), Expect = 2e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 220 ccgggagcgtcaaatcggtcttcaagtcgtgggaccagcgcctcgagacttccgggggtt 279 ||||||||||||| || ||||||||| | ||||| |||||||| || || || | ||||| Sbjct: 168 ccgggagcgtcaagtccgtcttcaagccctgggagcagcgccttgacacctcggtgggtt 227 Query: 280 ttctggagagtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatg 339 ||||||||||||||||||||||||||||| ||||| |||||||||| || || ||||||| Sbjct: 228 ttctggagagtaatgagggtgaccctgagctacttattttcatcccgttcacatcagatg 287 Query: 340 tgaagatcaagagc 353 | |||||||||||| Sbjct: 288 ttaagatcaagagc 301 Score = 89.7 bits (45), Expect = 2e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 111 atggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgctc 170 ||||| ||||||||||| ||| || | ||||||||||||||||||||| ||||||||| Sbjct: 59 atggcctgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgctc 118 Query: 171 tacaatcacatcgacatccccaagg 195 ||||| ||||||||| ||||||||| Sbjct: 119 tacaaccacatcgacgtccccaagg 143
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 153 bits (77), Expect = 2e-33 Identities = 104/113 (92%) Strand = Plus / Plus Query: 508 ccaggtattcaaggttccaaggtgtggccaacttaactctgcattttcctgataactttg 567 ||||||||||||||||||| |||||||| ||| ||||||| ||||| ||||| ||||||| Sbjct: 21167470 ccaggtattcaaggttccagggtgtggctaacctaactctacatttccctgagaactttg 21167529 Query: 568 gtggtgatacgactaagatatattacattgggttgcgtggtgaagctactcag 620 | ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 21167530 gaggtgacacaactaagatatattacattgggttgcgtggtgaagctactcag 21167582 Score = 101 bits (51), Expect = 5e-18 Identities = 51/51 (100%) Strand = Plus / Plus Query: 275 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 325 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 21165670 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 21165720 Score = 99.6 bits (50), Expect = 2e-17 Identities = 59/62 (95%) Strand = Plus / Plus Query: 618 cagaacaaaagggatgttgtggccacaattgtgtatgaagtaatgcccaatccgtctgat 677 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 21167663 cagaacaaaagggatgttgtggccacaattgtgtatgaaataatgcctaatccatctgat 21167722 Query: 678 ca 679 || Sbjct: 21167723 ca 21167724 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 193 aggtggtggctctgaatgaatctgtggccgggagcgtcaaatcggtcttcaagtcgtggg 252 |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| | |||| Sbjct: 21164493 aggtggtggctctgaacgaatctgtggcggggagcgtcaagtcggtcttcaagccctggg 21164552 Query: 253 accagcgcctcga 265 | ||||||||||| Sbjct: 21164553 agcagcgcctcga 21164565 Score = 97.6 bits (49), Expect = 8e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 327 tttacctcagatgtgaagatcaagagcatcgctgttgttggtggtgctgatggtacaagc 386 ||||| ||||| || ||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct: 21166694 tttacatcagacgtcaagatcaagagcatctctgttgttggtggtgcagatggaacaagc 21166753 Query: 387 ccttcaagaatgagagc 403 ||||| ||||||||||| Sbjct: 21166754 ccttctagaatgagagc 21166770 Score = 95.6 bits (48), Expect = 3e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 21164139 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 21164198 Query: 169 tctacaatcacatcgacatccccaaggt 196 ||| ||| ||||||||| |||||||||| Sbjct: 21164199 tcttcaaccacatcgacgtccccaaggt 21164226 Score = 75.8 bits (38), Expect = 3e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 460 aggaatgggaactggcagagaatttgcagggtgttcttgagtatcaaaccaggt 513 |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 21167021 aggaatgggagctggcagagaatttgcagggagttcttgagtaccaaacaaggt 21167074 Score = 75.8 bits (38), Expect = 3e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 693 gagactggaggtggtttctcacatgttgagtaggcatgtcag 734 |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 21168331 gagactggaggtggtttctcgcatgttgagtaggcatgtcag 21168372 Score = 48.1 bits (24), Expect = 0.064 Identities = 42/48 (87%) Strand = Plus / Plus Query: 415 gagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcagg 462 ||||||| |||||||| |||||||||||| ||||| |||||||||| Sbjct: 21166890 gagaaggcattgacttcaatgatgctcaaaatatgcaacctgtgcagg 21166937
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 153 bits (77), Expect = 2e-33 Identities = 104/113 (92%) Strand = Plus / Plus Query: 508 ccaggtattcaaggttccaaggtgtggccaacttaactctgcattttcctgataactttg 567 ||||||||||||||||||| |||||||| ||| ||||||| ||||| ||||| ||||||| Sbjct: 135015 ccaggtattcaaggttccagggtgtggctaacctaactctacatttccctgagaactttg 135074 Query: 568 gtggtgatacgactaagatatattacattgggttgcgtggtgaagctactcag 620 | ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 135075 gaggtgacacaactaagatatattacattgggttgcgtggtgaagctactcag 135127 Score = 101 bits (51), Expect = 5e-18 Identities = 51/51 (100%) Strand = Plus / Plus Query: 275 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 325 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133215 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 133265 Score = 99.6 bits (50), Expect = 2e-17 Identities = 59/62 (95%) Strand = Plus / Plus Query: 618 cagaacaaaagggatgttgtggccacaattgtgtatgaagtaatgcccaatccgtctgat 677 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 135208 cagaacaaaagggatgttgtggccacaattgtgtatgaaataatgcctaatccatctgat 135267 Query: 678 ca 679 || Sbjct: 135268 ca 135269 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 193 aggtggtggctctgaatgaatctgtggccgggagcgtcaaatcggtcttcaagtcgtggg 252 |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| | |||| Sbjct: 132038 aggtggtggctctgaacgaatctgtggcggggagcgtcaagtcggtcttcaagccctggg 132097 Query: 253 accagcgcctcga 265 | ||||||||||| Sbjct: 132098 agcagcgcctcga 132110 Score = 97.6 bits (49), Expect = 8e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 327 tttacctcagatgtgaagatcaagagcatcgctgttgttggtggtgctgatggtacaagc 386 ||||| ||||| || ||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct: 134239 tttacatcagacgtcaagatcaagagcatctctgttgttggtggtgcagatggaacaagc 134298 Query: 387 ccttcaagaatgagagc 403 ||||| ||||||||||| Sbjct: 134299 ccttctagaatgagagc 134315 Score = 95.6 bits (48), Expect = 3e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 131684 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 131743 Query: 169 tctacaatcacatcgacatccccaaggt 196 ||| ||| ||||||||| |||||||||| Sbjct: 131744 tcttcaaccacatcgacgtccccaaggt 131771 Score = 75.8 bits (38), Expect = 3e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 460 aggaatgggaactggcagagaatttgcagggtgttcttgagtatcaaaccaggt 513 |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 134566 aggaatgggagctggcagagaatttgcagggagttcttgagtaccaaacaaggt 134619 Score = 75.8 bits (38), Expect = 3e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 693 gagactggaggtggtttctcacatgttgagtaggcatgtcag 734 |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 135876 gagactggaggtggtttctcgcatgttgagtaggcatgtcag 135917 Score = 48.1 bits (24), Expect = 0.064 Identities = 42/48 (87%) Strand = Plus / Plus Query: 415 gagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcagg 462 ||||||| |||||||| |||||||||||| ||||| |||||||||| Sbjct: 134435 gagaaggcattgacttcaatgatgctcaaaatatgcaacctgtgcagg 134482
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 153 bits (77), Expect = 2e-33 Identities = 104/113 (92%) Strand = Plus / Plus Query: 508 ccaggtattcaaggttccaaggtgtggccaacttaactctgcattttcctgataactttg 567 ||||||||||||||||||| |||||||| ||| ||||||| ||||| ||||| ||||||| Sbjct: 64979 ccaggtattcaaggttccagggtgtggctaacctaactctacatttccctgagaactttg 65038 Query: 568 gtggtgatacgactaagatatattacattgggttgcgtggtgaagctactcag 620 | ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 65039 gaggtgacacaactaagatatattacattgggttgcgtggtgaagctactcag 65091 Score = 101 bits (51), Expect = 5e-18 Identities = 51/51 (100%) Strand = Plus / Plus Query: 275 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 325 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63179 gggttttctggagagtaatgagggtgaccctgagttacttgttttcatccc 63229 Score = 99.6 bits (50), Expect = 2e-17 Identities = 59/62 (95%) Strand = Plus / Plus Query: 618 cagaacaaaagggatgttgtggccacaattgtgtatgaagtaatgcccaatccgtctgat 677 ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| Sbjct: 65172 cagaacaaaagggatgttgtggccacaattgtgtatgaaataatgcctaatccatctgat 65231 Query: 678 ca 679 || Sbjct: 65232 ca 65233 Score = 97.6 bits (49), Expect = 8e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 193 aggtggtggctctgaatgaatctgtggccgggagcgtcaaatcggtcttcaagtcgtggg 252 |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| | |||| Sbjct: 62002 aggtggtggctctgaacgaatctgtggcggggagcgtcaagtcggtcttcaagccctggg 62061 Query: 253 accagcgcctcga 265 | ||||||||||| Sbjct: 62062 agcagcgcctcga 62074 Score = 97.6 bits (49), Expect = 8e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 327 tttacctcagatgtgaagatcaagagcatcgctgttgttggtggtgctgatggtacaagc 386 ||||| ||||| || ||||||||||||||| |||||||||||||||| ||||| |||||| Sbjct: 64203 tttacatcagacgtcaagatcaagagcatctctgttgttggtggtgcagatggaacaagc 64262 Query: 387 ccttcaagaatgagagc 403 ||||| ||||||||||| Sbjct: 64263 ccttctagaatgagagc 64279 Score = 95.6 bits (48), Expect = 3e-16 Identities = 78/88 (88%) Strand = Plus / Plus Query: 109 ggatggcgtgcctgcacgatcacgagtgtggggatcacaactgcgccgccgattggtcgc 168 ||||||||||||||||||| ||| || | ||||||||||||||||||||| ||||||| Sbjct: 61648 ggatggcgtgcctgcacgaccacagctgcgaggatcacaactgcgccgccgactggtcgc 61707 Query: 169 tctacaatcacatcgacatccccaaggt 196 ||| ||| ||||||||| |||||||||| Sbjct: 61708 tcttcaaccacatcgacgtccccaaggt 61735 Score = 75.8 bits (38), Expect = 3e-10 Identities = 50/54 (92%) Strand = Plus / Plus Query: 460 aggaatgggaactggcagagaatttgcagggtgttcttgagtatcaaaccaggt 513 |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||| Sbjct: 64530 aggaatgggagctggcagagaatttgcagggagttcttgagtaccaaacaaggt 64583 Score = 75.8 bits (38), Expect = 3e-10 Identities = 41/42 (97%) Strand = Plus / Plus Query: 693 gagactggaggtggtttctcacatgttgagtaggcatgtcag 734 |||||||||||||||||||| ||||||||||||||||||||| Sbjct: 65840 gagactggaggtggtttctcgcatgttgagtaggcatgtcag 65881 Score = 48.1 bits (24), Expect = 0.064 Identities = 42/48 (87%) Strand = Plus / Plus Query: 415 gagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcagg 462 ||||||| |||||||| |||||||||||| ||||| |||||||||| Sbjct: 64399 gagaaggcattgacttcaatgatgctcaaaatatgcaacctgtgcagg 64446
>emb|CT986034.1| partial cDNA sequence from a Lambda ZAP II normalized full-length cDNA library of differentiating xylem from Eucalyptus gunnii Length = 792 Score = 117 bits (59), Expect = 8e-23 Identities = 149/179 (83%) Strand = Plus / Plus Query: 291 aatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtgaagatcaag 350 ||||| ||||| |||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 210 aatgatggtgatcctgagttacttgttttcattccatttacttcggatgtcaagatcaag 269 Query: 351 agcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagagcatttata 410 || || | |||| |||||||| ||||| |||| || |||| |||||||| ||||| Sbjct: 270 agtatttcaattgtgggtggtgcagatggatcaagtccatcaaagatgagagcgtttatc 329 Query: 411 aatagagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcaggaatggga 469 |||||||| || ||||||||||| ||||| || | |||||| |||| ||||||||||| Sbjct: 330 aatagagagggcattgacttttcagatgcccagagcatgcaagctgtccaggaatggga 388 Score = 56.0 bits (28), Expect = 3e-04 Identities = 109/136 (80%) Strand = Plus / Plus Query: 547 tgcattttcctgataactttggtggtgatacgactaagatatattacattgggttgcgtg 606 ||||||||||||| |||||||| ||||| |||| ||||| |||||||||| || | Sbjct: 466 tgcattttcctgacaactttgggggtgacacgagccagatacattacattggctttaaag 525 Query: 607 gtgaagctactcagaacaaaagggatgttgtggccacaattgtgtatgaagtaatgccca 666 | |||||||||||| || ||||| ||||| || || || || |||||| | ||||| | Sbjct: 526 gcgaagctactcagttgaagagggacgttgttgctaccatcgtatatgaattgatgccga 585 Query: 667 atccgtctgatcataa 682 |||| ||||||||||| Sbjct: 586 atccttctgatcataa 601
>emb|CT029706.1| Poplar cDNA sequences Length = 525 Score = 101 bits (51), Expect = 5e-18 Identities = 147/179 (82%) Strand = Plus / Plus Query: 291 aatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtgaagatcaag 350 ||||||||||| || ||||||||||||| ||| ||||| || || ||||| ||||||||| Sbjct: 306 aatgagggtgatccggagttacttgtttacattccattcacatcggatgttaagatcaag 365 Query: 351 agcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagagcatttata 410 ||||| | ||||||| ||||||||||| |||| ||||| | |||||||| ||||| Sbjct: 366 agcatttcaattgttggaggtgctgatggagcaagtccttctaagatgagagcgtttatc 425 Query: 411 aatagagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcaggaatggga 469 ||| |||| || |||||||| || |||||||||| ||||| |||| ||||| ||||| Sbjct: 426 aatcgagatggcattgacttctcagatgctcaaagtatgcaagctgttcaggagtggga 484
>emb|CT029705.1| Poplar cDNA sequences Length = 525 Score = 101 bits (51), Expect = 5e-18 Identities = 147/179 (82%) Strand = Plus / Minus Query: 291 aatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtgaagatcaag 350 ||||||||||| || ||||||||||||| ||| ||||| || || ||||| ||||||||| Sbjct: 220 aatgagggtgatccggagttacttgtttacattccattcacatcggatgttaagatcaag 161 Query: 351 agcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagagcatttata 410 ||||| | ||||||| ||||||||||| |||| ||||| | |||||||| ||||| Sbjct: 160 agcatttcaattgttggaggtgctgatggagcaagtccttctaagatgagagcgtttatc 101 Query: 411 aatagagaaggtattgacttttctgatgctcaaaacatgcagcctgtgcaggaatggga 469 ||| |||| || |||||||| || |||||||||| ||||| |||| ||||| ||||| Sbjct: 100 aatcgagatggcattgacttctcagatgctcaaagtatgcaagctgttcaggagtggga 42
>gb|DQ887073.1| Arachis hypogaea thioredoxin family Trp26-like protein mRNA, partial cds Length = 195 Score = 73.8 bits (37), Expect = 1e-09 Identities = 121/149 (81%) Strand = Plus / Plus Query: 303 cctgagttacttgttttcatcccatttacctcagatgtgaagatcaagagcatcgctgtt 362 |||||||||||||||||||| |||||||| ||| |||| || || || ||||| | | Sbjct: 4 cctgagttacttgttttcattccatttacttcaaatgtcaaaattaaaagcatatccata 63 Query: 363 gttggtggtgctgatggtacaagcccttcaagaatgagagcatttataaatagagaaggt 422 || || || |||||||| ||||| ||| | | ||||||||| ||||| ||| |||| || Sbjct: 64 gtaggcggagctgatgggacaagtcctgctaaaatgagagcgtttatcaatcgagatgga 123 Query: 423 attgacttttctgatgctcaaaacatgca 451 ||||||||||| ||||| |||| |||||| Sbjct: 124 attgacttttcagatgcacaaagcatgca 152
>dbj|AK227379.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-04-M17 Length = 796 Score = 67.9 bits (34), Expect = 7e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 283 tggagagtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtga 342 ||||||| |||||||| |||||||| || |||||||| | |||||||| ||||| || | Sbjct: 207 tggagagcaatgagggagaccctgaattgcttgtttttgtaccatttacatcagacgtca 266 Query: 343 agatcaagagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagag 402 ||||||||||||| | |||||||||| |||| || ||||| ||||| | |||||| Sbjct: 267 agatcaagagcatatcaattgttggtggccctgaaggaacaagtccttctaagttgagag 326 Query: 403 catttataaatagagaaggtattgacttttctgatgct 440 ||||| ||| | ||||| |||||||| || |||||| Sbjct: 327 tgtttatcaatcgtgaagggattgacttctccgatgct 364 Score = 42.1 bits (21), Expect = 4.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 157 ccgattggtcgctctacaatcacatcgacatccccaaggtggtggctctgaatgaatctg 216 |||||||||| |||||||| ||||| || || ||||||| |||||||||||||||| Sbjct: 81 ccgattggtctctctacaaacacattgatctctccaaggtttcagctctgaatgaatctg 140 Query: 217 t 217 | Sbjct: 141 t 141
>ref|NM_128155.1| Arabidopsis thaliana unknown protein (AT2G25950) mRNA, complete cds Length = 835 Score = 67.9 bits (34), Expect = 7e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 283 tggagagtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtga 342 ||||||| |||||||| |||||||| || |||||||| | |||||||| ||||| || | Sbjct: 257 tggagagcaatgagggagaccctgaattgcttgtttttgtaccatttacatcagacgtca 316 Query: 343 agatcaagagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagag 402 ||||||||||||| | |||||||||| |||| || ||||| ||||| | |||||| Sbjct: 317 agatcaagagcatatcaattgttggtggccctgaaggaacaagtccttctaagttgagag 376 Query: 403 catttataaatagagaaggtattgacttttctgatgct 440 ||||| ||| | ||||| |||||||| || |||||| Sbjct: 377 tgtttatcaatcgtgaagggattgacttctccgatgct 414 Score = 42.1 bits (21), Expect = 4.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 157 ccgattggtcgctctacaatcacatcgacatccccaaggtggtggctctgaatgaatctg 216 |||||||||| |||||||| ||||| || || ||||||| |||||||||||||||| Sbjct: 131 ccgattggtctctctacaaacacattgatctctccaaggtttcagctctgaatgaatctg 190 Query: 217 t 217 | Sbjct: 191 t 191
>gb|AY087923.1| Arabidopsis thaliana clone 39666 mRNA, complete sequence Length = 835 Score = 67.9 bits (34), Expect = 7e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 283 tggagagtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtga 342 ||||||| |||||||| |||||||| || |||||||| | |||||||| ||||| || | Sbjct: 257 tggagagcaatgagggagaccctgaattgcttgtttttgtaccatttacatcagacgtca 316 Query: 343 agatcaagagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagag 402 ||||||||||||| | |||||||||| |||| || ||||| ||||| | |||||| Sbjct: 317 agatcaagagcatatcaattgttggtggccctgaaggaacaagtccttctaagttgagag 376 Query: 403 catttataaatagagaaggtattgacttttctgatgct 440 ||||| ||| | ||||| |||||||| || |||||| Sbjct: 377 tgtttatcaatcgtgaagggattgacttctccgatgct 414 Score = 42.1 bits (21), Expect = 4.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 157 ccgattggtcgctctacaatcacatcgacatccccaaggtggtggctctgaatgaatctg 216 |||||||||| |||||||| ||||| || || ||||||| |||||||||||||||| Sbjct: 131 ccgattggtctctctacaaacacattgatctctccaaggtttcagctctgaatgaatctg 190 Query: 217 t 217 | Sbjct: 191 t 191
>gb|BT005851.1| Arabidopsis thaliana At2g25950 gene, complete cds Length = 615 Score = 67.9 bits (34), Expect = 7e-08 Identities = 127/158 (80%) Strand = Plus / Plus Query: 283 tggagagtaatgagggtgaccctgagttacttgttttcatcccatttacctcagatgtga 342 ||||||| |||||||| |||||||| || |||||||| | |||||||| ||||| || | Sbjct: 173 tggagagcaatgagggagaccctgaattgcttgtttttgtaccatttacatcagacgtca 232 Query: 343 agatcaagagcatcgctgttgttggtggtgctgatggtacaagcccttcaagaatgagag 402 ||||||||||||| | |||||||||| |||| || ||||| ||||| | |||||| Sbjct: 233 agatcaagagcatatcaattgttggtggccctgaaggaacaagtccttctaagttgagag 292 Query: 403 catttataaatagagaaggtattgacttttctgatgct 440 ||||| ||| | ||||| |||||||| || |||||| Sbjct: 293 tgtttatcaatcgtgaagggattgacttctccgatgct 330 Score = 42.1 bits (21), Expect = 4.0 Identities = 51/61 (83%) Strand = Plus / Plus Query: 157 ccgattggtcgctctacaatcacatcgacatccccaaggtggtggctctgaatgaatctg 216 |||||||||| |||||||| ||||| || || ||||||| |||||||||||||||| Sbjct: 47 ccgattggtctctctacaaacacattgatctctccaaggtttcagctctgaatgaatctg 106 Query: 217 t 217 | Sbjct: 107 t 107
>ref|XM_001120798.1| PREDICTED: Apis mellifera similar to CG7781-PA (LOC726321), mRNA Length = 1866 Score = 48.1 bits (24), Expect = 0.064 Identities = 33/36 (91%) Strand = Plus / Minus Query: 73 cgagcgagcgaggaagaggaagagcgtgagagagag 108 |||||||||||| ||||||||||| | ||||||||| Sbjct: 152 cgagcgagcgagaaagaggaagagagagagagagag 117
>gb|AC184082.2| Populus trichocarpa clone Pop1-55P2, complete sequence Length = 109299 Score = 48.1 bits (24), Expect = 0.064 Identities = 33/36 (91%) Strand = Plus / Plus Query: 74 gagcgagcgaggaagaggaagagcgtgagagagagg 109 ||||| ||||||||||||||||| ||||||| |||| Sbjct: 47339 gagcgggcgaggaagaggaagagagtgagagtgagg 47374
>gb|BT027708.1| Gasterosteus aculeatus clone CGX96-F09 mRNA sequence Length = 2034 Score = 46.1 bits (23), Expect = 0.25 Identities = 35/39 (89%) Strand = Plus / Minus Query: 73 cgagcgagcgaggaagaggaagagcgtgagagagaggga 111 |||||||||||||||| || |||| | |||||||||||| Sbjct: 1313 cgagcgagcgaggaagcggcagagagggagagagaggga 1275
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1002 aatactctcttcatttcaaaata 1024 ||||||||||||||||||||||| Sbjct: 61194 aatactctcttcatttcaaaata 61172
>gb|AC147430.9| Medicago truncatula clone mth2-71e6, complete sequence Length = 125478 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1003 atactctcttcatttcaaaataagtgt 1029 ||||||||||||||||| ||||||||| Sbjct: 122126 atactctcttcatttcataataagtgt 122152
>gb|AC138452.10| Medicago truncatula clone mth2-17p11, complete sequence Length = 127710 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 1003 atactctcttcatttcaaaataagtgt 1029 ||||||||||||||||| ||||||||| Sbjct: 40511 atactctcttcatttcataataagtgt 40537
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1004 tactctcttcatttcaaaataag 1026 ||||||||||||||||||||||| Sbjct: 3717190 tactctcttcatttcaaaataag 3717212
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1002 aatactctcttcatttcaaaata 1024 ||||||||||||||||||||||| Sbjct: 18325829 aatactctcttcatttcaaaata 18325807 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1010 cttcatttcaaaataagtgtt 1030 ||||||||||||||||||||| Sbjct: 22385465 cttcatttcaaaataagtgtt 22385485
>emb|AL713933.6|CNS07YPE Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104421 Score = 46.1 bits (23), Expect = 0.25 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1004 tactctcttcatttcaaaataag 1026 ||||||||||||||||||||||| Sbjct: 32483 tactctcttcatttcaaaataag 32461
>gb|AC119943.12| Mus musculus chromosome 10, clone RP24-271F24, complete sequence Length = 174009 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 87 agaggaagagcgtgagagagag 108 |||||||||||||||||||||| Sbjct: 54044 agaggaagagcgtgagagagag 54065
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 608 tgaagctactcagaacaaaagg 629 |||||||||||||||||||||| Sbjct: 9520729 tgaagctactcagaacaaaagg 9520750 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1004 tactctcttcatttcaaaata 1024 ||||||||||||||||||||| Sbjct: 20961533 tactctcttcatttcaaaata 20961553
>gb|AC096317.6| Rattus norvegicus 1 BAC CH230-148F9 (Children's Hospital Oakland Research Institute) complete sequence Length = 211459 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 82 gaggaagaggaagagcgtgagagagaggga 111 ||||||||||||||||| ||||| |||||| Sbjct: 67435 gaggaagaggaagagcgagagagggaggga 67464
>emb|CR378668.1| Photobacterium profundum SS9; segment 6/12 Length = 348128 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgctgttgttggtggtgctgatggt 380 |||||||| ||||||||||||||||| Sbjct: 72973 tcgctgttattggtggtgctgatggt 72998 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 355 tcgctgttgttggtggtgctgatggt 380 |||||||| ||||||||||||||||| Sbjct: 73955 tcgctgttattggtggtgctgatggt 73980
>gb|AC160403.5| Mus musculus 10 BAC RP24-286J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 180869 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 87 agaggaagagcgtgagagagag 108 |||||||||||||||||||||| Sbjct: 133089 agaggaagagcgtgagagagag 133110
>dbj|AP005157.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0005L24 Length = 155365 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 608 tgaagctactcagaacaaaagg 629 |||||||||||||||||||||| Sbjct: 50759 tgaagctactcagaacaaaagg 50780
>gb|AC009134.6|AC009134 Homo sapiens chromosome 16 clone RP11-505I1, complete sequence Length = 193236 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Minus Query: 82 gaggaagaggaagagcgtgagagagaggga 111 ||||||||||||||| | |||||||||||| Sbjct: 122376 gaggaagaggaagagggagagagagaggga 122347
>gb|U91325.1|HSU91325 Human chromosome 16p13.11 BAC clone CIT987SK-731F11 complete sequence Length = 135046 Score = 44.1 bits (22), Expect = 1.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 82 gaggaagaggaagagcgtgagagagaggga 111 ||||||||||||||| | |||||||||||| Sbjct: 10312 gaggaagaggaagagggagagagagaggga 10341
>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3, complete sequence Length = 116999 Score = 44.1 bits (22), Expect = 1.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1004 tactctcttcatttcaaaataagtgt 1029 |||||||||||||| ||||||||||| Sbjct: 82536 tactctcttcattttaaaataagtgt 82511
>ref|XM_342784.3| PREDICTED: Rattus norvegicus SRY-box containing gene 5 (Sox5), mRNA Length = 1164 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 cattcgagcgagcgaggaaga 89 ||||||||||||||||||||| Sbjct: 1089 cattcgagcgagcgaggaaga 1109
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 825 ggtccagcttgaacattcgta 845 ||||||||||||||||||||| Sbjct: 4703168 ggtccagcttgaacattcgta 4703148
>gb|AC146573.21| Medicago truncatula clone mth2-145j1, complete sequence Length = 128992 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1002 aatactctcttcatttcaaaa 1022 ||||||||||||||||||||| Sbjct: 44899 aatactctcttcatttcaaaa 44879
>gb|AC139328.4| Mus musculus BAC clone RP24-299C21 from chromosome Y, complete sequence Length = 156740 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1013 catttcaaaataagtgtttaa 1033 ||||||||||||||||||||| Sbjct: 63844 catttcaaaataagtgtttaa 63824
>gb|AC110253.10| Mus musculus chromosome 5, clone RP23-270N2, complete sequence Length = 224182 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tggtggtgctgatggtacaag 385 ||||||||||||||||||||| Sbjct: 110253 tggtggtgctgatggtacaag 110273
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1010 cttcatttcaaaataagtgtt 1030 ||||||||||||||||||||| Sbjct: 67351 cttcatttcaaaataagtgtt 67331
>ref|XM_817711.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.70.1390) partial mRNA Length = 1806 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 951 gtcgttgccaacgctgtcatc 971 ||||||||||||||||||||| Sbjct: 631 gtcgttgccaacgctgtcatc 651
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1001 aaatactctcttcatttcaaaataagtgt 1029 |||||||| |||| ||||||||||||||| Sbjct: 110402 aaatactcccttcgtttcaaaataagtgt 110430
>gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, complete sequence Length = 205604 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tggtggtgctgatggtacaag 385 ||||||||||||||||||||| Sbjct: 1648 tggtggtgctgatggtacaag 1668
>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence Length = 141787 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1004 tactctcttcatttcaaaata 1024 ||||||||||||||||||||| Sbjct: 67191 tactctcttcatttcaaaata 67211
>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced Length = 381696 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 579 actaagatatattacattggg 599 ||||||||||||||||||||| Sbjct: 32839 actaagatatattacattggg 32819
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1003 atactctcttcatttcaaaataagt 1027 ||||||||||| ||||||||||||| Sbjct: 18331030 atactctcttcgtttcaaaataagt 18331006
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1004 tactctcttcatttcaaaata 1024 ||||||||||||||||||||| Sbjct: 27331263 tactctcttcatttcaaaata 27331283
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1001 aaatactctcttcatttcaaaataagtgt 1029 |||||||| |||| ||||||||||||||| Sbjct: 31475914 aaatactcccttcgtttcaaaataagtgt 31475886
>emb|AL031779.5|HS445N2 Human DNA sequence from clone RP3-445N2 on chromosome 6p12.1-21.1 Contains the 5' end of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052) and part of a novel gene, complete sequence Length = 101010 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 579 actaagatatattacattggg 599 ||||||||||||||||||||| Sbjct: 56592 actaagatatattacattggg 56572
>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains the gene for a novel protein (zgc:63880), the 3' end of the gene for a novel protein similar to vertebrate KCND2, the 5' end of the ing3 gene for inhibitor of growth family member 3 and a CpG island, complete sequence Length = 200582 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 618 cagaacaaaagggatgttgtggccacaat 646 |||||||||||||||| | |||||||||| Sbjct: 105801 cagaacaaaagggatgctctggccacaat 105829
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1004 tactctcttcatttcaaaata 1024 ||||||||||||||||||||| Sbjct: 27708 tactctcttcatttcaaaata 27728
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1003 atactctcttcatttcaaaataagt 1027 ||||||||||| ||||||||||||| Sbjct: 45766 atactctcttcgtttcaaaataagt 45742
>gb|AC121757.8| Homo sapiens 12 BAC RP11-259K21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 65725 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 agcctgtgcaggaatgggaac 471 ||||||||||||||||||||| Sbjct: 61996 agcctgtgcaggaatgggaac 61976
>emb|AL672263.13| Mouse DNA sequence from clone RP23-479M21 on chromosome X, complete sequence Length = 147014 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 361 ttgttggtggtgctgatggta 381 ||||||||||||||||||||| Sbjct: 55267 ttgttggtggtgctgatggta 55247
>gb|AC140676.3| Mus musculus BAC clone RP23-124A12 from 6, complete sequence Length = 197819 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Minus Query: 83 aggaagaggaagagcgtgagagagaggga 111 |||||||||||||| | |||||||||||| Sbjct: 52888 aggaagaggaagagggagagagagaggga 52860
>gb|AC147567.3| Mus musculus BAC clone RP23-107E14 from 6, complete sequence Length = 191770 Score = 42.1 bits (21), Expect = 4.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 83 aggaagaggaagagcgtgagagagaggga 111 |||||||||||||| | |||||||||||| Sbjct: 184109 aggaagaggaagagggagagagagaggga 184137
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 ccttcaagaatgagagcattt 407 ||||||||||||||||||||| Sbjct: 343174 ccttcaagaatgagagcattt 343194 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 192,623,875 Number of extensions: 10062722 Number of successful extensions: 260475 Number of sequences better than 10.0: 56 Number of HSP's gapped: 260467 Number of HSP's successfully gapped: 93 Length of query: 1052 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1029 Effective length of database: 18,503,978,556 Effective search space: 19040593934124 Effective search space used: 19040593934124 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
