ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf59k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q3SY46:KR133_HUMAN Keratin-associated protein 13-3 - Homo sapien... 33 2.0
2Q96DN6:MBD6_HUMAN Methyl-CpG-binding domain protein 6 - Homo sap... 33 2.6
3Q5ZK74:ASHWN_CHICK Ashwin - Gallus gallus (Chicken) 32 5.7
4O43157:PLXB1_HUMAN Plexin-B1 precursor - Homo sapiens (Human) 31 7.5

>Q3SY46:KR133_HUMAN Keratin-associated protein 13-3 - Homo sapiens (Human)|
          Length = 172
 Score = 33.1 bits (74), Expect = 2.0
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +1

Query: 196 PNSCKTLCSGREDYKPCHAACLWGVRLRAHGRTTEGETSVRGIGAPATCRVRC 354
           PNSC+TLC    +  PCH +C +                 RG G+ + C + C
Sbjct: 63  PNSCQTLC---VESSPCHTSCYYPRTHMLCNSCLTMHVGSRGFGSNSCCSLSC 112



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>Q96DN6:MBD6_HUMAN Methyl-CpG-binding domain protein 6 - Homo sapiens (Human)|
          Length = 1003

 Score = 32.7 bits (73), Expect = 2.6
 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
 Frame = -2

Query: 715 TADPLPPSSLLPVACPPPSTPGDRFLRVLLHLDLPPRIF*GIPLGHVCGGT*RSRNLGPS 536
           T  PLPPS+ LP    P S P        +HL L      G P     G      +   S
Sbjct: 268 TPPPLPPSNNLPAHPGPASQP--PVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLS 325

Query: 535 AAGMGRHPPLAFSSL---RLPVRRAPSAS 458
           AA   +HPPL   S    R P  +APSAS
Sbjct: 326 AAAKAQHPPLPPPSTLQGRRPRAQAPSAS 354



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>Q5ZK74:ASHWN_CHICK Ashwin - Gallus gallus (Chicken)|
          Length = 241

 Score = 31.6 bits (70), Expect = 5.7
 Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +2

Query: 467 RSASDGKTKRRKSKRRMPPHTSCAGT--QISAPSCAATYMTKGNASKNARRQVQMKQDPE 640
           +   +G T R K     PP  S   T  ++SAPS A+TY++  + S++A+ +V+  +  +
Sbjct: 126 KKTENGATDRLKP----PPAGSITNTVRRLSAPSNASTYISASSLSEDAKLEVRNNEAKQ 181

Query: 641 ESVS 652
            ++S
Sbjct: 182 NNIS 185



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>O43157:PLXB1_HUMAN Plexin-B1 precursor - Homo sapiens (Human)|
          Length = 2135

 Score = 31.2 bits (69), Expect = 7.5
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -2

Query: 712 ADPLPPSSLLPVACPPPSTPGDRFLRVLLHLDLPP 608
           A PL PS    VA  PP+ PG   L   + LDLPP
Sbjct: 789 ASPLSPSE---VAAVPPADPGPEALHPTVPLDLPP 820


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 171,385,513
Number of extensions: 3639892
Number of successful extensions: 10691
Number of sequences better than 10.0: 4
Number of HSP's gapped: 10663
Number of HSP's successfully gapped: 4
Length of query: 351
Length of database: 100,686,439
Length adjustment: 114
Effective length of query: 237
Effective length of database: 69,416,809
Effective search space: 16451783733
Effective search space used: 16451783733
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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