ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf59j02 |
|---|---|
| Clone Library Name | barley_pub |
>Q86SZ2:TPC6B_HUMAN Trafficking protein particle complex subunit 6B - Homo sapiens| (Human) Length = 158 Score = 61.2 bits (147), Expect = 3e-09 Identities = 35/85 (41%), Positives = 47/85 (55%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +G +VLQDN FR LT++S G + S L F CGLIRG L+ Sbjct: 89 QGIYVLQDNKFRLLTQMSA-----------------GKQYLEHASKYLAFTCGLIRGGLS 131 Query: 409 NLGIPCAVSADMSNLPACSFVVRIK 483 NLGI V+A++S++PAC F V I+ Sbjct: 132 NLGIKSIVTAEVSSMPACKFQVMIQ 156
>Q32L78:TPC6B_BOVIN Trafficking protein particle complex subunit 6B - Bos taurus| (Bovine) Length = 158 Score = 61.2 bits (147), Expect = 3e-09 Identities = 35/85 (41%), Positives = 47/85 (55%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +G +VLQDN FR LT++S G + S L F CGLIRG L+ Sbjct: 89 QGIYVLQDNKFRLLTQMSA-----------------GKQYLEHASKYLAFTCGLIRGGLS 131 Query: 409 NLGIPCAVSADMSNLPACSFVVRIK 483 NLGI V+A++S++PAC F V I+ Sbjct: 132 NLGIKSIVTAEVSSMPACKFQVMIQ 156
>Q9D289:TPC6B_MOUSE Trafficking protein particle complex subunit 6B - Mus musculus| (Mouse) Length = 158 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/85 (40%), Positives = 46/85 (54%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +G +VLQDN FR L ++S G + S L F CGLIRG L+ Sbjct: 89 QGIYVLQDNKFRLLIQLSA-----------------GKQYLEHASKYLAFTCGLIRGGLS 131 Query: 409 NLGIPCAVSADMSNLPACSFVVRIK 483 NLGI V+A++S++PAC F V I+ Sbjct: 132 NLGIKSIVTAEVSSMPACKFQVMIQ 156
>Q09784:YA95_SCHPO Uncharacterized protein C13G6.05c - Schizosaccharomyces pombe| (Fission yeast) Length = 245 Score = 51.2 bits (121), Expect(2) = 6e-08 Identities = 29/84 (34%), Positives = 36/84 (42%) Frame = +1 Query: 226 REGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGAL 405 R G FVL D +F W T+++ G AQ T+ YFP G IRG + Sbjct: 95 RRGIFVLTDTYFYWFTKMT---------------AMTGTEMAQITTPYFYFPSGFIRGVV 139 Query: 406 TNLGIPCAVSADMSNLPACSFVVR 477 G V A NLP C F V+ Sbjct: 140 YTFGYSAQVIAQCPNLPTCIFHVK 163 Score = 25.4 bits (54), Expect(2) = 6e-08 Identities = 9/16 (56%), Positives = 15/16 (93%) Frame = +2 Query: 188 IEAIGFQVGHQLSERV 235 +E+IGFQVG +++ER+ Sbjct: 43 LESIGFQVGRKITERL 58
>Q3T086:TPC6A_BOVIN Trafficking protein particle complex subunit 6A - Bos taurus| (Bovine) Length = 159 Score = 50.1 bits (118), Expect(2) = 2e-07 Identities = 30/85 (35%), Positives = 42/85 (49%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +GT+VLQDN F L R++ G + L F CGL+RG L+ Sbjct: 90 QGTYVLQDNSFPLLVRMAS-----------------GLQYLEEAPKFLAFTCGLLRGTLS 132 Query: 409 NLGIPCAVSADMSNLPACSFVVRIK 483 LG+ V+A ++ LPAC F V I+ Sbjct: 133 TLGVKSLVTASVAALPACKFQVVIQ 157 Score = 24.6 bits (52), Expect(2) = 2e-07 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 188 IEAIGFQVGHQLSERVP 238 +E +GF+VG L ER+P Sbjct: 37 LEGMGFRVGQALGERLP 53
>Q78XR0:TPC6A_MOUSE Trafficking protein particle complex subunit 6A - Mus musculus| (Mouse) Length = 159 Score = 46.2 bits (108), Expect(2) = 2e-06 Identities = 29/85 (34%), Positives = 39/85 (45%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +GT+VLQDN F L + P + L F CGL+ GAL Sbjct: 90 QGTYVLQDNSFPLLVTMGSGPQY-----------------LEEAPKFLAFTCGLLCGALH 132 Query: 409 NLGIPCAVSADMSNLPACSFVVRIK 483 LG V+A +++LPAC F V I+ Sbjct: 133 TLGFQSLVTASVASLPACKFQVVIQ 157 Score = 25.0 bits (53), Expect(2) = 2e-06 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 188 IEAIGFQVGHQLSERVP 238 +E +GF+VG L ER+P Sbjct: 37 LEGLGFRVGQALGERLP 53
>O75865:TPC6A_HUMAN Trafficking protein particle complex subunit 6A - Homo sapiens| (Human) Length = 159 Score = 46.2 bits (108), Expect(2) = 3e-06 Identities = 30/84 (35%), Positives = 39/84 (46%) Frame = +1 Query: 229 EGTFVLQDNHFRWLTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALT 408 +GT+VLQDN F L ++ G + L F CGL+RGAL Sbjct: 90 QGTYVLQDNSFPLLLPMAS-----------------GLQYLEEAPKFLAFTCGLLRGALY 132 Query: 409 NLGIPCAVSADMSNLPACSFVVRI 480 LGI V+A ++ LP C F V I Sbjct: 133 TLGIESVVTASVAALPVCKFQVVI 156 Score = 24.6 bits (52), Expect(2) = 3e-06 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +2 Query: 188 IEAIGFQVGHQLSERVP 238 +E +GF+VG L ER+P Sbjct: 37 LEGMGFRVGQALGERLP 53
>Q03337:TRS31_YEAST Transport protein particle 31 kDa subunit - Saccharomyces| cerevisiae (Baker's yeast) Length = 283 Score = 33.9 bits (76), Expect = 0.49 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +1 Query: 373 YFPCGLIRGALTNLGIPCAVSA 438 YF CG+I+G L N G PC V+A Sbjct: 231 YFVCGIIKGFLFNAGFPCGVTA 252
>P34303:YKQ8_CAEEL Putative zinc finger protein C06E1.8 - Caenorhabditis elegans| Length = 397 Score = 32.7 bits (73), Expect = 1.1 Identities = 18/69 (26%), Positives = 31/69 (44%) Frame = +1 Query: 268 LTRVSLDPAVENTDATENDSGSLGDSAAQTTSMLLYFPCGLIRGALTNLGIPCAVSADMS 447 L + L A N D+ N++ + + L+ P LIR L NL P ++ + + Sbjct: 121 LLHIHLQTATNNNDSNNNNNSVIPHGVINRSCHLITDPFQLIRTPLLNLPTPQSLESSVP 180 Query: 448 NLPACSFVV 474 +LP S + Sbjct: 181 SLPIASIPI 189
>Q9C801:MOS2_ARATH Protein MOS2 - Arabidopsis thaliana (Mouse-ear cress)| Length = 462 Score = 31.6 bits (70), Expect = 2.4 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Frame = -3 Query: 473 TTKEHAGRFDISAETAHGIPKFVRAPLIN---PHGKYKSM 363 T+KE FD S A+ IPK+V P+ N PH K K++ Sbjct: 30 TSKEFVTEFDPSKTLANSIPKYVIPPIENTWRPHKKMKNL 69
>Q9ES00:UBE4B_MOUSE Ubiquitin conjugation factor E4 B - Mus musculus (Mouse)| Length = 1173 Score = 31.2 bits (69), Expect = 3.2 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +2 Query: 98 ESCVDGVVMEMVAAYCGRFYAAKPELAAGRIEAIGFQVGHQLSERVPSFFKII 256 E C +VM +V C + Y P L A +E + F + R FF++I Sbjct: 776 EPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVM-FMTNPSVQPRTQKFFEMI 827
>O95155:UBE4B_HUMAN Ubiquitin conjugation factor E4 B - Homo sapiens (Human)| Length = 1302 Score = 30.8 bits (68), Expect = 4.2 Identities = 16/53 (30%), Positives = 24/53 (45%) Frame = +2 Query: 98 ESCVDGVVMEMVAAYCGRFYAAKPELAAGRIEAIGFQVGHQLSERVPSFFKII 256 E C +VM +V C + Y P L A +E + F + R FF++I Sbjct: 905 EPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVM-FMTNPAVQPRTQKFFEMI 956
>Q47RQ0:LEPA_THEFY GTP-binding protein lepA - Thermobifida fusca (strain YX)| Length = 614 Score = 30.4 bits (67), Expect = 5.5 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -1 Query: 550 LSKILEP--QARFISDLFYFSQIMSLCAPRKNMLEGLTYLQRQHME 419 +++I EP +A ++ Y IM LC R+ +L+G+ YL +E Sbjct: 403 IAEIREPVVKATVLTPSDYVGPIMELCQGRRGVLDGMEYLSEDRVE 448
>P54225:HEMH_SYNY3 Ferrochelatase - Synechocystis sp. (strain PCC 6803)| Length = 387 Score = 29.6 bits (65), Expect = 9.2 Identities = 20/60 (33%), Positives = 29/60 (48%) Frame = -3 Query: 506 VLFLSDHVFMRTTKEHAGRFDISAETAHGIPKFVRAPLINPHGKYKSMLVVWAAESPNDP 327 + F+S+H+ T +E + AE A GI F R P +N H + L +S NDP Sbjct: 269 ISFVSEHI--ETLQEIDIEYREIAEEA-GIDNFQRVPALNTHPVFIDALAQMVMDSLNDP 325 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 101,572,846 Number of extensions: 2096076 Number of successful extensions: 4979 Number of sequences better than 10.0: 14 Number of HSP's gapped: 4972 Number of HSP's successfully gapped: 18 Length of query: 207 Length of database: 100,686,439 Length adjustment: 108 Effective length of query: 99 Effective length of database: 71,062,579 Effective search space: 7035195321 Effective search space used: 7035195321 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
